EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000006948 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 2118 bases
Position: chrreftig_19:909466-911583
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000011842	RNA_pol_L_2	PF13656.6	2.1e-29	1	1
ENSCSAVP00000011842	RNA_pol_L	PF01193.24	2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000011980	-	637	-	ENSCSAVP00000011842	117 (aa)	-	H2Z2N0

Gene Model

Click here to download ENSCSAVG00000006948's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000006948's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000006948	-	91	83.019	ENSG00000228049	POLR2J2	94	80.734	Homo_sapiens
ENSCSAVG00000006948	-	100	81.197	ENSG00000005075	POLR2J	100	81.197	Homo_sapiens
ENSCSAVG00000006948	-	100	80.342	ENSAPOG00000019538	polr2j	100	80.342	Acanthochromis_polyacanthus
ENSCSAVG00000006948	-	100	74.803	ENSAMEG00000015480	-	100	74.803	Ailuropoda_melanoleuca
ENSCSAVG00000006948	-	78	69.565	ENSACIG00000014549	POLR2J2	82	69.565	Amphilophus_citrinellus
ENSCSAVG00000006948	-	100	79.487	ENSAOCG00000006937	polr2j	100	79.487	Amphiprion_ocellaris
ENSCSAVG00000006948	-	100	80.342	ENSAPEG00000021761	polr2j	100	80.342	Amphiprion_percula
ENSCSAVG00000006948	-	100	80.342	ENSATEG00000013312	-	100	80.342	Anabas_testudineus
ENSCSAVG00000006948	-	100	80.342	ENSATEG00000009731	polr2j	100	80.342	Anabas_testudineus
ENSCSAVG00000006948	-	86	78.218	ENSAPLG00000003744	-	100	78.218	Anas_platyrhynchos
ENSCSAVG00000006948	-	100	73.504	ENSACAG00000000251	POLR2J	100	73.504	Anolis_carolinensis
ENSCSAVG00000006948	-	100	80.342	ENSACLG00000014564	polr2j	100	80.342	Astatotilapia_calliptera
ENSCSAVG00000006948	-	100	82.051	ENSAMXG00000007517	polr2j	100	82.051	Astyanax_mexicanus
ENSCSAVG00000006948	-	62	58.904	ENSBTAG00000048046	-	61	58.904	Bos_taurus
ENSCSAVG00000006948	-	98	63.478	WBGene00012187	rpb-11	93	63.478	Caenorhabditis_elegans
ENSCSAVG00000006948	-	100	81.197	ENSCJAG00000016203	-	100	81.197	Callithrix_jacchus
ENSCSAVG00000006948	-	100	81.197	ENSCAFG00000013683	-	100	81.197	Canis_familiaris
ENSCSAVG00000006948	-	85	79.798	ENSTSYG00000029243	-	85	79.798	Carlito_syrichta
ENSCSAVG00000006948	-	100	81.197	ENSCPOG00000001401	-	100	81.197	Cavia_porcellus
ENSCSAVG00000006948	-	100	62.393	ENSCATG00000016595	-	86	78.049	Cercocebus_atys
ENSCSAVG00000006948	-	100	81.197	ENSCLAG00000005238	-	100	81.197	Chinchilla_lanigera
ENSCSAVG00000006948	-	100	81.197	ENSCSAG00000018092	-	100	81.197	Chlorocebus_sabaeus
ENSCSAVG00000006948	-	100	97.436	ENSCING00000020531	-	100	97.436	Ciona_intestinalis
ENSCSAVG00000006948	-	100	81.197	ENSCGRG00001012814	Polr2j	100	81.197	Cricetulus_griseus_chok1gshd
ENSCSAVG00000006948	-	100	67.521	ENSCGRG00000008433	Polr2j	100	67.521	Cricetulus_griseus_crigri
ENSCSAVG00000006948	-	100	79.487	ENSCSEG00000020352	polr2j	100	79.487	Cynoglossus_semilaevis
ENSCSAVG00000006948	-	100	80.342	ENSCVAG00000014267	polr2j	100	80.342	Cyprinodon_variegatus
ENSCSAVG00000006948	-	100	82.051	ENSDARG00000035146	polr2j	100	82.051	Danio_rerio
ENSCSAVG00000006948	-	100	81.197	ENSDORG00000005934	Polr2j	100	81.197	Dipodomys_ordii
ENSCSAVG00000006948	-	98	71.304	FBgn0032634	Rpb11	98	71.304	Drosophila_melanogaster
ENSCSAVG00000006948	-	100	57.265	ENSEBUG00000016100	polr2j	100	57.265	Eptatretus_burgeri
ENSCSAVG00000006948	-	100	81.197	ENSEASG00005016864	-	100	81.197	Equus_asinus_asinus
ENSCSAVG00000006948	-	100	81.197	ENSELUG00000012822	polr2j	100	81.197	Esox_lucius
ENSCSAVG00000006948	-	100	81.197	ENSFCAG00000000377	-	100	81.197	Felis_catus
ENSCSAVG00000006948	-	100	81.197	ENSFALG00000009523	POLR2J	100	81.197	Ficedula_albicollis
ENSCSAVG00000006948	-	100	81.197	ENSFDAG00000010507	-	100	81.197	Fukomys_damarensis
ENSCSAVG00000006948	-	100	80.342	ENSFHEG00000006625	polr2j	100	80.342	Fundulus_heteroclitus
ENSCSAVG00000006948	-	100	82.051	ENSGMOG00000018207	polr2j	100	82.051	Gadus_morhua
ENSCSAVG00000006948	-	100	81.197	ENSGALG00000030808	-	100	81.197	Gallus_gallus
ENSCSAVG00000006948	-	100	80.342	ENSGAFG00000019555	polr2j	100	80.342	Gambusia_affinis
ENSCSAVG00000006948	-	100	80.342	ENSGACG00000003310	polr2j	100	80.342	Gasterosteus_aculeatus
ENSCSAVG00000006948	-	97	73.451	ENSGAGG00000018304	-	96	73.451	Gopherus_agassizii
ENSCSAVG00000006948	-	85	76.000	ENSGGOG00000004519	-	80	76.000	Gorilla_gorilla
ENSCSAVG00000006948	-	100	80.342	ENSHBUG00000008467	polr2j	100	80.342	Haplochromis_burtoni
ENSCSAVG00000006948	-	100	81.197	ENSHGLG00000013598	POLR2J	100	81.197	Heterocephalus_glaber_female
ENSCSAVG00000006948	-	100	81.197	ENSHGLG00100011242	POLR2J	100	81.197	Heterocephalus_glaber_male
ENSCSAVG00000006948	-	100	81.197	ENSHCOG00000014827	polr2j	68	81.197	Hippocampus_comes
ENSCSAVG00000006948	-	100	82.051	ENSIPUG00000023960	polr2j	100	82.051	Ictalurus_punctatus
ENSCSAVG00000006948	-	100	81.197	ENSSTOG00000006377	POLR2J	100	81.197	Ictidomys_tridecemlineatus
ENSCSAVG00000006948	-	100	81.197	ENSJJAG00000013854	-	100	81.197	Jaculus_jaculus
ENSCSAVG00000006948	-	100	77.778	ENSJJAG00000018834	-	100	77.778	Jaculus_jaculus
ENSCSAVG00000006948	-	100	80.342	ENSKMAG00000014581	polr2j	79	80.342	Kryptolebias_marmoratus
ENSCSAVG00000006948	-	100	81.197	ENSLBEG00000005885	polr2j	100	81.197	Labrus_bergylta
ENSCSAVG00000006948	-	100	82.051	ENSLOCG00000001885	polr2j	89	82.051	Lepisosteus_oculatus
ENSCSAVG00000006948	-	100	81.197	ENSLAFG00000021507	-	100	81.197	Loxodonta_africana
ENSCSAVG00000006948	-	100	73.077	ENSMMUG00000012019	POLR2J	100	73.077	Macaca_mulatta
ENSCSAVG00000006948	-	100	81.197	ENSMAMG00000009374	polr2j	100	81.197	Mastacembelus_armatus
ENSCSAVG00000006948	-	100	80.342	ENSMZEG00005011932	polr2j	100	80.342	Maylandia_zebra
ENSCSAVG00000006948	-	100	81.197	ENSMGAG00000003534	POLR2J	100	81.197	Meleagris_gallopavo
ENSCSAVG00000006948	-	100	81.197	ENSMAUG00000013049	Polr2j	100	81.197	Mesocricetus_auratus
ENSCSAVG00000006948	-	77	82.222	ENSMICG00000026811	-	91	82.222	Microcebus_murinus
ENSCSAVG00000006948	-	100	81.197	ENSMOCG00000001294	Polr2j	100	81.197	Microtus_ochrogaster
ENSCSAVG00000006948	-	100	80.342	ENSMMOG00000013265	polr2j	100	80.342	Mola_mola
ENSCSAVG00000006948	-	100	74.219	ENSMODG00000013617	-	100	74.219	Monodelphis_domestica
ENSCSAVG00000006948	-	100	81.197	ENSMALG00000020749	polr2j	100	81.197	Monopterus_albus
ENSCSAVG00000006948	-	100	81.197	MGP_CAROLIEiJ_G0027851	Polr2j	100	81.197	Mus_caroli
ENSCSAVG00000006948	-	100	81.197	ENSMUSG00000039771	Polr2j	100	81.197	Mus_musculus
ENSCSAVG00000006948	-	100	81.197	MGP_PahariEiJ_G0024434	Polr2j	100	81.197	Mus_pahari
ENSCSAVG00000006948	-	100	81.197	MGP_SPRETEiJ_G0028853	Polr2j	100	81.197	Mus_spretus
ENSCSAVG00000006948	-	100	81.197	ENSMLUG00000010467	POLR2J	100	81.197	Myotis_lucifugus
ENSCSAVG00000006948	-	100	81.197	ENSNGAG00000023412	Polr2j	100	81.197	Nannospalax_galili
ENSCSAVG00000006948	-	66	80.519	ENSNBRG00000006580	polr2j	59	80.519	Neolamprologus_brichardi
ENSCSAVG00000006948	-	100	67.521	ENSODEG00000008559	-	100	67.521	Octodon_degus
ENSCSAVG00000006948	-	100	81.197	ENSODEG00000015648	-	100	81.197	Octodon_degus
ENSCSAVG00000006948	-	100	80.342	ENSONIG00000000259	polr2j	100	80.342	Oreochromis_niloticus
ENSCSAVG00000006948	-	100	78.632	ENSOANG00000020912	POLR2J	100	78.632	Ornithorhynchus_anatinus
ENSCSAVG00000006948	-	100	74.803	ENSOCUG00000023609	POLR2J	100	74.803	Oryctolagus_cuniculus
ENSCSAVG00000006948	-	100	80.342	ENSORLG00000029046	polr2j	83	80.342	Oryzias_latipes
ENSCSAVG00000006948	-	100	80.342	ENSORLG00020007625	polr2j	83	80.342	Oryzias_latipes_hni
ENSCSAVG00000006948	-	100	80.342	ENSORLG00015003457	polr2j	83	80.342	Oryzias_latipes_hsok
ENSCSAVG00000006948	-	100	80.342	ENSOMEG00000002097	polr2j	100	80.342	Oryzias_melastigma
ENSCSAVG00000006948	-	100	60.156	ENSOGAG00000008250	-	100	60.156	Otolemur_garnettii
ENSCSAVG00000006948	-	100	81.197	ENSOARG00000014204	-	98	81.197	Ovis_aries
ENSCSAVG00000006948	-	100	81.197	ENSPPRG00000012439	-	100	81.197	Panthera_pardus
ENSCSAVG00000006948	-	97	72.807	ENSPTIG00000018714	-	100	77.670	Panthera_tigris_altaica
ENSCSAVG00000006948	-	85	79.000	ENSPSIG00000010173	-	100	79.000	Pelodiscus_sinensis
ENSCSAVG00000006948	-	100	80.342	ENSPMGG00000021256	polr2j	100	80.342	Periophthalmus_magnuspinnatus
ENSCSAVG00000006948	-	100	81.197	ENSPEMG00000015733	Polr2j	100	81.197	Peromyscus_maniculatus_bairdii
ENSCSAVG00000006948	-	100	81.197	ENSPCIG00000009026	-	100	81.197	Phascolarctos_cinereus
ENSCSAVG00000006948	-	100	80.342	ENSPFOG00000012001	polr2j	99	80.342	Poecilia_formosa
ENSCSAVG00000006948	-	100	80.342	ENSPLAG00000014075	polr2j	100	80.342	Poecilia_latipinna
ENSCSAVG00000006948	-	100	80.342	ENSPMEG00000020585	polr2j	100	80.342	Poecilia_mexicana
ENSCSAVG00000006948	-	100	80.342	ENSPREG00000015255	polr2j	100	80.342	Poecilia_reticulata
ENSCSAVG00000006948	-	100	81.197	ENSPCOG00000024573	-	100	81.197	Propithecus_coquereli
ENSCSAVG00000006948	-	99	78.448	ENSPVAG00000017770	-	66	78.448	Pteropus_vampyrus
ENSCSAVG00000006948	-	100	80.342	ENSPNYG00000014832	polr2j	100	80.342	Pundamilia_nyererei
ENSCSAVG00000006948	-	100	83.761	ENSPNAG00000016595	polr2j	100	83.761	Pygocentrus_nattereri
ENSCSAVG00000006948	-	100	81.197	ENSRNOG00000001430	Polr2j	100	81.197	Rattus_norvegicus
ENSCSAVG00000006948	-	100	81.197	ENSSBOG00000025579	-	100	81.197	Saimiri_boliviensis_boliviensis
ENSCSAVG00000006948	-	59	82.609	ENSSHAG00000010443	-	81	82.609	Sarcophilus_harrisii
ENSCSAVG00000006948	-	96	82.301	ENSSFOG00015003371	polr2j	86	82.301	Scleropages_formosus
ENSCSAVG00000006948	-	100	80.342	ENSSMAG00000006729	polr2j	100	80.342	Scophthalmus_maximus
ENSCSAVG00000006948	-	100	80.342	ENSSDUG00000018490	polr2j	100	80.342	Seriola_dumerili
ENSCSAVG00000006948	-	100	80.342	ENSSLDG00000022354	polr2j	100	80.342	Seriola_lalandi_dorsalis
ENSCSAVG00000006948	-	100	81.197	ENSSPUG00000010802	-	100	81.197	Sphenodon_punctatus
ENSCSAVG00000006948	-	100	80.342	ENSSPAG00000021953	polr2j	100	80.342	Stegastes_partitus
ENSCSAVG00000006948	-	100	66.667	ENSSSCG00000003703	-	83	66.667	Sus_scrofa
ENSCSAVG00000006948	-	100	81.197	ENSSSCG00000007688	-	100	81.197	Sus_scrofa
ENSCSAVG00000006948	-	59	82.609	ENSTGUG00000004510	-	100	82.609	Taeniopygia_guttata
ENSCSAVG00000006948	-	85	79.000	ENSTGUG00000004501	-	100	79.000	Taeniopygia_guttata
ENSCSAVG00000006948	-	100	80.342	ENSTRUG00000020842	polr2j	100	80.342	Takifugu_rubripes
ENSCSAVG00000006948	-	100	79.487	ENSTNIG00000002994	polr2j	100	79.487	Tetraodon_nigroviridis
ENSCSAVG00000006948	-	91	73.585	ENSTBEG00000005797	-	70	73.585	Tupaia_belangeri
ENSCSAVG00000006948	-	100	81.197	ENSUAMG00000011310	-	100	81.197	Ursus_americanus
ENSCSAVG00000006948	-	100	81.197	ENSUMAG00000012594	-	100	81.197	Ursus_maritimus
ENSCSAVG00000006948	-	100	81.197	ENSXETG00000001108	polr2j	100	81.197	Xenopus_tropicalis
ENSCSAVG00000006948	-	100	80.342	ENSXMAG00000012422	polr2j	100	80.342	Xiphophorus_maculatus