EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000006949 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 13971 bases
Position: chrreftig_19:911656-925626
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000011844	DEAD	PF00270.29	1e-36	1	1
ENSCSAVP00000011843	DEAD	PF00270.29	1.4e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000011982	-	1041	-	ENSCSAVP00000011844	331 (aa)	-	H2Z2N2
ENSCSAVT00000011981	-	1535	-	ENSCSAVP00000011843	484 (aa)	-	H2Z2N1

Gene Model

Click here to download ENSCSAVG00000006949's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000006949's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000006949	-	62	39.739	ENSCSAVG00000000522	-	71	39.739
ENSCSAVG00000006949	-	65	33.544	ENSCSAVG00000008916	-	85	31.250
ENSCSAVG00000006949	-	61	32.641	ENSCSAVG00000004227	-	63	32.641
ENSCSAVG00000006949	-	61	31.290	ENSCSAVG00000003835	-	75	31.290
ENSCSAVG00000006949	-	69	36.957	ENSCSAVG00000004895	-	56	37.667
ENSCSAVG00000006949	-	64	34.700	ENSCSAVG00000002353	-	71	35.587
ENSCSAVG00000006949	-	59	30.137	ENSCSAVG00000002162	-	68	30.137
ENSCSAVG00000006949	-	64	30.225	ENSCSAVG00000000630	-	81	30.225
ENSCSAVG00000006949	-	71	31.458	ENSCSAVG00000010817	-	61	31.458
ENSCSAVG00000006949	-	72	35.920	ENSCSAVG00000011566	-	76	35.920
ENSCSAVG00000006949	-	67	33.333	ENSCSAVG00000004158	-	69	33.333
ENSCSAVG00000006949	-	63	35.347	ENSCSAVG00000004304	-	50	35.347
ENSCSAVG00000006949	-	64	33.861	ENSCSAVG00000003023	-	55	33.861
ENSCSAVG00000006949	-	62	33.117	ENSCSAVG00000004191	-	60	33.117

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000006949	-	99	63.211	ENSG00000124228	DDX27	69	62.827	Homo_sapiens
ENSCSAVG00000006949	-	100	61.020	ENSAPOG00000017645	ddx27	65	61.020	Acanthochromis_polyacanthus
ENSCSAVG00000006949	-	99	63.618	ENSAMEG00000013627	DDX27	63	63.618	Ailuropoda_melanoleuca
ENSCSAVG00000006949	-	100	61.460	ENSACIG00000014378	ddx27	75	68.000	Amphilophus_citrinellus
ENSCSAVG00000006949	-	100	60.941	ENSAOCG00000021035	ddx27	65	60.941	Amphiprion_ocellaris
ENSCSAVG00000006949	-	100	60.941	ENSAPEG00000022281	ddx27	65	60.941	Amphiprion_percula
ENSCSAVG00000006949	-	100	60.612	ENSATEG00000010093	ddx27	66	60.612	Anabas_testudineus
ENSCSAVG00000006949	-	100	60.649	ENSAPLG00000011377	DDX27	66	60.649	Anas_platyrhynchos
ENSCSAVG00000006949	-	99	62.805	ENSANAG00000036257	DDX27	64	62.805	Aotus_nancymaae
ENSCSAVG00000006949	-	100	60.976	ENSACLG00000014992	ddx27	65	60.976	Astatotilapia_calliptera
ENSCSAVG00000006949	-	100	64.082	ENSAMXG00000000911	ddx27	66	64.082	Astyanax_mexicanus
ENSCSAVG00000006949	-	99	63.340	ENSBTAG00000006671	DDX27	64	63.340	Bos_taurus
ENSCSAVG00000006949	-	99	50.704	WBGene00022148	ddx-27	66	50.704	Caenorhabditis_elegans
ENSCSAVG00000006949	-	99	63.008	ENSCJAG00000016135	DDX27	64	63.008	Callithrix_jacchus
ENSCSAVG00000006949	-	99	62.348	ENSCAFG00000011384	DDX27	64	62.348	Canis_familiaris
ENSCSAVG00000006949	-	99	62.348	ENSCAFG00020017143	DDX27	66	62.348	Canis_lupus_dingo
ENSCSAVG00000006949	-	99	63.340	ENSCHIG00000007753	DDX27	66	63.340	Capra_hircus
ENSCSAVG00000006949	-	99	62.626	ENSTSYG00000030362	DDX27	64	62.626	Carlito_syrichta
ENSCSAVG00000006949	-	99	63.951	ENSCAPG00000010800	DDX27	67	63.951	Cavia_aperea
ENSCSAVG00000006949	-	99	63.951	ENSCPOG00000002009	DDX27	64	63.951	Cavia_porcellus
ENSCSAVG00000006949	-	99	62.805	ENSCCAG00000029782	DDX27	62	62.805	Cebus_capucinus
ENSCSAVG00000006949	-	99	63.211	ENSCATG00000034832	DDX27	64	63.211	Cercocebus_atys
ENSCSAVG00000006949	-	99	63.008	ENSCLAG00000008075	DDX27	64	63.008	Chinchilla_lanigera
ENSCSAVG00000006949	-	99	63.211	ENSCSAG00000014996	DDX27	64	63.211	Chlorocebus_sabaeus
ENSCSAVG00000006949	-	99	60.772	ENSCPBG00000026800	DDX27	63	60.772	Chrysemys_picta_bellii
ENSCSAVG00000006949	-	100	89.050	ENSCING00000004235	-	66	90.103	Ciona_intestinalis
ENSCSAVG00000006949	-	94	61.373	ENSCANG00000038431	DDX27	60	61.373	Colobus_angolensis_palliatus
ENSCSAVG00000006949	-	99	63.415	ENSCGRG00001015330	Ddx27	62	63.415	Cricetulus_griseus_chok1gshd
ENSCSAVG00000006949	-	99	63.415	ENSCGRG00000008199	Ddx27	64	63.415	Cricetulus_griseus_crigri
ENSCSAVG00000006949	-	100	62.729	ENSCSEG00000020260	ddx27	65	62.653	Cynoglossus_semilaevis
ENSCSAVG00000006949	-	100	61.663	ENSCVAG00000011736	ddx27	64	61.663	Cyprinodon_variegatus
ENSCSAVG00000006949	-	100	63.821	ENSDARG00000091831	ddx27	63	63.821	Danio_rerio
ENSCSAVG00000006949	-	99	63.673	ENSDNOG00000019453	DDX27	62	63.673	Dasypus_novemcinctus
ENSCSAVG00000006949	-	99	63.105	ENSDORG00000014137	Ddx27	64	62.575	Dipodomys_ordii
ENSCSAVG00000006949	-	99	43.544	FBgn0021995	Rs1	52	61.425	Drosophila_melanogaster
ENSCSAVG00000006949	-	99	46.545	ENSETEG00000018239	DDX27	61	46.545	Echinops_telfairi
ENSCSAVG00000006949	-	100	62.041	ENSEBUG00000004326	ddx27	76	62.041	Eptatretus_burgeri
ENSCSAVG00000006949	-	99	62.729	ENSEASG00005023342	DDX27	70	62.424	Equus_asinus_asinus
ENSCSAVG00000006949	-	99	62.729	ENSECAG00000020963	DDX27	64	62.729	Equus_caballus
ENSCSAVG00000006949	-	100	62.398	ENSELUG00000014535	ddx27	63	62.398	Esox_lucius
ENSCSAVG00000006949	-	99	63.211	ENSFCAG00000001448	DDX27	64	63.211	Felis_catus
ENSCSAVG00000006949	-	100	61.866	ENSFALG00000004884	DDX27	68	61.866	Ficedula_albicollis
ENSCSAVG00000006949	-	99	62.322	ENSFDAG00000018681	DDX27	64	62.322	Fukomys_damarensis
ENSCSAVG00000006949	-	100	61.290	ENSFHEG00000006419	ddx27	90	64.596	Fundulus_heteroclitus
ENSCSAVG00000006949	-	80	73.664	ENSGMOG00000016662	ddx27	58	73.664	Gadus_morhua
ENSCSAVG00000006949	-	100	62.475	ENSGALG00000006974	DDX27	65	62.475	Gallus_gallus
ENSCSAVG00000006949	-	100	61.145	ENSGAFG00000020344	ddx27	66	61.145	Gambusia_affinis
ENSCSAVG00000006949	-	100	60.489	ENSGACG00000003177	ddx27	64	60.489	Gasterosteus_aculeatus
ENSCSAVG00000006949	-	99	61.460	ENSGAGG00000001296	DDX27	67	61.460	Gopherus_agassizii
ENSCSAVG00000006949	-	99	61.943	ENSGGOG00000015474	-	78	61.943	Gorilla_gorilla
ENSCSAVG00000006949	-	100	61.179	ENSHBUG00000008119	ddx27	65	61.179	Haplochromis_burtoni
ENSCSAVG00000006949	-	99	62.933	ENSHGLG00000008388	DDX27	64	62.933	Heterocephalus_glaber_female
ENSCSAVG00000006949	-	99	62.933	ENSHGLG00100000130	DDX27	64	62.933	Heterocephalus_glaber_male
ENSCSAVG00000006949	-	100	63.618	ENSIPUG00000024627	ddx27	63	63.618	Ictalurus_punctatus
ENSCSAVG00000006949	-	99	63.340	ENSSTOG00000003645	DDX27	64	63.340	Ictidomys_tridecemlineatus
ENSCSAVG00000006949	-	99	60.736	ENSJJAG00000009056	Ddx27	62	60.736	Jaculus_jaculus
ENSCSAVG00000006949	-	100	61.382	ENSKMAG00000014889	ddx27	66	61.382	Kryptolebias_marmoratus
ENSCSAVG00000006949	-	100	60.649	ENSLBEG00000022589	ddx27	67	60.649	Labrus_bergylta
ENSCSAVG00000006949	-	100	61.336	ENSLACG00000011592	DDX27	63	61.336	Latimeria_chalumnae
ENSCSAVG00000006949	-	100	63.489	ENSLOCG00000002659	ddx27	63	63.489	Lepisosteus_oculatus
ENSCSAVG00000006949	-	99	62.955	ENSLAFG00000012190	DDX27	64	62.955	Loxodonta_africana
ENSCSAVG00000006949	-	99	63.211	ENSMFAG00000045749	DDX27	64	63.211	Macaca_fascicularis
ENSCSAVG00000006949	-	99	63.211	ENSMMUG00000023621	DDX27	64	63.211	Macaca_mulatta
ENSCSAVG00000006949	-	99	63.211	ENSMNEG00000043931	DDX27	64	63.211	Macaca_nemestrina
ENSCSAVG00000006949	-	99	60.366	ENSMLEG00000028160	DDX27	62	60.366	Mandrillus_leucophaeus
ENSCSAVG00000006949	-	100	61.382	ENSMAMG00000009174	ddx27	69	61.303	Mastacembelus_armatus
ENSCSAVG00000006949	-	100	61.179	ENSMZEG00005008750	ddx27	65	61.179	Maylandia_zebra
ENSCSAVG00000006949	-	100	62.069	ENSMGAG00000008727	DDX27	71	62.069	Meleagris_gallopavo
ENSCSAVG00000006949	-	99	63.083	ENSMAUG00000000552	Ddx27	64	63.286	Mesocricetus_auratus
ENSCSAVG00000006949	-	99	62.805	ENSMICG00000002005	DDX27	64	62.805	Microcebus_murinus
ENSCSAVG00000006949	-	99	62.525	ENSMOCG00000019594	Ddx27	65	62.525	Microtus_ochrogaster
ENSCSAVG00000006949	-	100	60.489	ENSMMOG00000012754	ddx27	64	60.489	Mola_mola
ENSCSAVG00000006949	-	99	63.244	ENSMODG00000016285	DDX27	64	63.951	Monodelphis_domestica
ENSCSAVG00000006949	-	100	61.460	ENSMALG00000020942	ddx27	70	61.460	Monopterus_albus
ENSCSAVG00000006949	-	99	63.211	MGP_CAROLIEiJ_G0024700	Ddx27	98	40.461	Mus_caroli
ENSCSAVG00000006949	-	99	63.211	ENSMUSG00000017999	Ddx27	98	41.118	Mus_musculus
ENSCSAVG00000006949	-	99	62.805	MGP_PahariEiJ_G0026142	Ddx27	98	40.984	Mus_pahari
ENSCSAVG00000006949	-	99	63.211	MGP_SPRETEiJ_G0025620	Ddx27	64	75.862	Mus_spretus
ENSCSAVG00000006949	-	99	63.544	ENSMPUG00000017572	DDX27	64	63.544	Mustela_putorius_furo
ENSCSAVG00000006949	-	99	63.211	ENSMLUG00000003186	DDX27	64	63.211	Myotis_lucifugus
ENSCSAVG00000006949	-	99	63.211	ENSNGAG00000023115	Ddx27	65	63.211	Nannospalax_galili
ENSCSAVG00000006949	-	66	55.864	ENSNBRG00000006206	ddx27	74	55.864	Neolamprologus_brichardi
ENSCSAVG00000006949	-	90	62.222	ENSNLEG00000006961	DDX27	65	62.222	Nomascus_leucogenys
ENSCSAVG00000006949	-	99	59.754	ENSMEUG00000014412	DDX27	63	59.754	Notamacropus_eugenii
ENSCSAVG00000006949	-	99	62.398	ENSOPRG00000014589	DDX27	63	62.398	Ochotona_princeps
ENSCSAVG00000006949	-	99	62.729	ENSODEG00000006281	DDX27	64	62.729	Octodon_degus
ENSCSAVG00000006949	-	100	61.507	ENSONIG00000019473	ddx27	65	61.179	Oreochromis_niloticus
ENSCSAVG00000006949	-	99	62.933	ENSOANG00000006395	DDX27	63	62.933	Ornithorhynchus_anatinus
ENSCSAVG00000006949	-	99	60.896	ENSOCUG00000016108	DDX27	62	61.789	Oryctolagus_cuniculus
ENSCSAVG00000006949	-	100	61.759	ENSORLG00000013059	ddx27	66	62.041	Oryzias_latipes
ENSCSAVG00000006949	-	100	61.789	ENSORLG00020021215	ddx27	66	62.041	Oryzias_latipes_hni
ENSCSAVG00000006949	-	100	61.741	ENSORLG00015017588	ddx27	65	62.041	Oryzias_latipes_hsok
ENSCSAVG00000006949	-	100	61.992	ENSOMEG00000023896	ddx27	64	61.992	Oryzias_melastigma
ENSCSAVG00000006949	-	99	63.211	ENSOGAG00000002130	DDX27	63	63.211	Otolemur_garnettii
ENSCSAVG00000006949	-	99	63.340	ENSOARG00000012345	DDX27	70	63.340	Ovis_aries
ENSCSAVG00000006949	-	99	63.211	ENSPPAG00000035843	DDX27	68	63.211	Pan_paniscus
ENSCSAVG00000006949	-	99	63.211	ENSPPRG00000006728	DDX27	64	63.211	Panthera_pardus
ENSCSAVG00000006949	-	99	63.211	ENSPTIG00000011662	DDX27	64	63.211	Panthera_tigris_altaica
ENSCSAVG00000006949	-	99	63.211	ENSPTRG00000013602	DDX27	64	61.741	Pan_troglodytes
ENSCSAVG00000006949	-	99	56.998	ENSPANG00000000820	DDX27	64	56.998	Papio_anubis
ENSCSAVG00000006949	-	100	63.286	ENSPKIG00000002802	ddx27	63	63.286	Paramormyrops_kingsleyae
ENSCSAVG00000006949	-	99	59.798	ENSPSIG00000014493	DDX27	72	60.202	Pelodiscus_sinensis
ENSCSAVG00000006949	-	100	61.066	ENSPMGG00000013002	ddx27	65	61.224	Periophthalmus_magnuspinnatus
ENSCSAVG00000006949	-	99	63.136	ENSPEMG00000023215	Ddx27	65	63.136	Peromyscus_maniculatus_bairdii
ENSCSAVG00000006949	-	100	59.100	ENSPMAG00000003094	ddx27	61	61.145	Petromyzon_marinus
ENSCSAVG00000006949	-	99	64.490	ENSPCIG00000008052	DDX27	82	64.490	Phascolarctos_cinereus
ENSCSAVG00000006949	-	100	61.179	ENSPFOG00000012217	ddx27	67	61.179	Poecilia_formosa
ENSCSAVG00000006949	-	100	61.179	ENSPLAG00000005431	ddx27	65	61.179	Poecilia_latipinna
ENSCSAVG00000006949	-	100	61.382	ENSPMEG00000005563	ddx27	96	61.382	Poecilia_mexicana
ENSCSAVG00000006949	-	64	61.489	ENSPREG00000015596	ddx27	91	69.375	Poecilia_reticulata
ENSCSAVG00000006949	-	99	63.211	ENSPPYG00000011113	DDX27	64	63.211	Pongo_abelii
ENSCSAVG00000006949	-	99	62.398	ENSPCOG00000025327	DDX27	62	62.398	Propithecus_coquereli
ENSCSAVG00000006949	-	99	63.211	ENSPVAG00000006308	DDX27	62	63.211	Pteropus_vampyrus
ENSCSAVG00000006949	-	82	66.834	ENSPNYG00000014670	ddx27	71	70.588	Pundamilia_nyererei
ENSCSAVG00000006949	-	100	64.634	ENSPNAG00000016043	ddx27	65	64.634	Pygocentrus_nattereri
ENSCSAVG00000006949	-	99	62.805	ENSRNOG00000008081	Ddx27	65	62.805	Rattus_norvegicus
ENSCSAVG00000006949	-	99	63.211	ENSRBIG00000024112	DDX27	65	63.211	Rhinopithecus_bieti
ENSCSAVG00000006949	-	99	63.211	ENSRROG00000024811	DDX27	64	63.211	Rhinopithecus_roxellana
ENSCSAVG00000006949	-	84	42.155	YLL008W	-	56	42.155	Saccharomyces_cerevisiae
ENSCSAVG00000006949	-	99	63.008	ENSSBOG00000034281	DDX27	64	63.008	Saimiri_boliviensis_boliviensis
ENSCSAVG00000006949	-	100	60.366	ENSSMAG00000006972	ddx27	64	60.569	Scophthalmus_maximus
ENSCSAVG00000006949	-	100	61.179	ENSSDUG00000018855	ddx27	64	60.744	Seriola_dumerili
ENSCSAVG00000006949	-	100	61.992	ENSSLDG00000004114	ddx27	65	61.992	Seriola_lalandi_dorsalis
ENSCSAVG00000006949	-	99	60.896	ENSSPUG00000015687	DDX27	73	60.521	Sphenodon_punctatus
ENSCSAVG00000006949	-	100	60.896	ENSSPAG00000007670	ddx27	69	60.896	Stegastes_partitus
ENSCSAVG00000006949	-	99	63.340	ENSSSCG00000022915	DDX27	69	63.340	Sus_scrofa
ENSCSAVG00000006949	-	100	62.069	ENSTGUG00000005649	DDX27	66	62.069	Taeniopygia_guttata
ENSCSAVG00000006949	-	93	61.758	ENSTRUG00000002089	ddx27	63	62.084	Takifugu_rubripes
ENSCSAVG00000006949	-	100	60.366	ENSTNIG00000002987	ddx27	65	60.366	Tetraodon_nigroviridis
ENSCSAVG00000006949	-	99	54.453	ENSTBEG00000005320	DDX27	62	54.453	Tupaia_belangeri
ENSCSAVG00000006949	-	99	62.322	ENSTTRG00000004288	DDX27	62	62.322	Tursiops_truncatus
ENSCSAVG00000006949	-	79	71.576	ENSUAMG00000025519	DDX27	52	71.576	Ursus_americanus
ENSCSAVG00000006949	-	99	63.618	ENSUMAG00000024473	DDX27	64	63.618	Ursus_maritimus
ENSCSAVG00000006949	-	83	71.287	ENSVPAG00000001314	DDX27	54	71.287	Vicugna_pacos
ENSCSAVG00000006949	-	99	62.348	ENSVVUG00000022331	DDX27	64	62.348	Vulpes_vulpes
ENSCSAVG00000006949	-	100	61.866	ENSXETG00000017231	ddx27	66	61.866	Xenopus_tropicalis
ENSCSAVG00000006949	-	100	61.191	ENSXCOG00000017180	ddx27	65	61.191	Xiphophorus_couchianus
ENSCSAVG00000006949	-	100	61.633	ENSXMAG00000012284	ddx27	65	61.633	Xiphophorus_maculatus