EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000007096 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 4242 bases
Position: chrreftig_58:554438-558679
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000012063	PARP	PF00644.20	1.6e-25	1	1
ENSCSAVP00000012064	PARP	PF00644.20	3.3e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000012203	-	1143	-	ENSCSAVP00000012063	380 (aa)	-	H2Z3A1
ENSCSAVT00000012204	-	1128	-	ENSCSAVP00000012064	376 (aa)	-	H2Z3A2

Gene Model

Click here to download ENSCSAVG00000007096's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000007096's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000007096	-	99	33.947	ENSCSAVG00000000429	-	83	33.766
ENSCSAVG00000007096	-	99	37.722	ENSCSAVG00000008867	-	99	37.722
ENSCSAVG00000007096	-	99	89.791	ENSCSAVG00000007134	-	100	89.791

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000007096	-	99	62.278	ENSCING00000014082	-	74	62.278	Ciona_intestinalis
ENSCSAVG00000007096	-	54	44.498	ENSCING00000015928	-	82	44.498	Ciona_intestinalis
ENSCSAVG00000007096	-	99	37.940	ENSCING00000001893	-	71	37.940	Ciona_intestinalis
ENSCSAVG00000007096	-	99	30.287	ENSCING00000001882	-	82	30.287	Ciona_intestinalis
ENSCSAVG00000007096	-	99	31.865	ENSCING00000013562	-	95	31.865	Ciona_intestinalis
ENSCSAVG00000007096	-	68	36.170	ENSCING00000002959	-	79	36.170	Ciona_intestinalis
ENSCSAVG00000007096	-	59	32.900	ENSLACG00000008565	-	73	32.900	Latimeria_chalumnae
ENSCSAVG00000007096	-	97	31.818	ENSPMAG00000003817	-	88	31.915	Petromyzon_marinus