EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000007119 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 7404 bases
Position: chrreftig_54:835996-843399
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000012110	RNA_pol_Rpc4	PF05132.14	8e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000012250	-	1082	-	ENSCSAVP00000012110	347 (aa)	-	H2Z3E8

Gene Model

Click here to download ENSCSAVG00000007119's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000007119's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000007119	-	90	33.509	ENSG00000168495	POLR3D	91	34.031	Homo_sapiens
ENSCSAVG00000007119	-	93	33.246	ENSAPOG00000017634	zgc:171971	88	33.246	Acanthochromis_polyacanthus
ENSCSAVG00000007119	-	88	32.507	ENSAPOG00000012197	polr3d	90	33.607	Acanthochromis_polyacanthus
ENSCSAVG00000007119	-	82	38.194	ENSAMEG00000003221	POLR3D	91	32.124	Ailuropoda_melanoleuca
ENSCSAVG00000007119	-	88	31.593	ENSACIG00000003707	zgc:171971	86	31.967	Amphilophus_citrinellus
ENSCSAVG00000007119	-	88	32.143	ENSACIG00000017832	polr3d	91	33.151	Amphilophus_citrinellus
ENSCSAVG00000007119	-	93	32.718	ENSAOCG00000007733	zgc:171971	88	34.367	Amphiprion_ocellaris
ENSCSAVG00000007119	-	88	33.702	ENSAOCG00000005037	polr3d	90	34.699	Amphiprion_ocellaris
ENSCSAVG00000007119	-	93	32.982	ENSAPEG00000016107	zgc:171971	88	35.584	Amphiprion_percula
ENSCSAVG00000007119	-	88	33.242	ENSAPEG00000013751	polr3d	90	34.332	Amphiprion_percula
ENSCSAVG00000007119	-	88	34.195	ENSATEG00000023125	zgc:171971	97	32.653	Anabas_testudineus
ENSCSAVG00000007119	-	90	31.522	ENSATEG00000023119	polr3d	91	32.345	Anabas_testudineus
ENSCSAVG00000007119	-	77	33.832	ENSACAG00000010592	POLR3D	84	32.537	Anolis_carolinensis
ENSCSAVG00000007119	-	90	33.596	ENSANAG00000030023	POLR3D	91	33.246	Aotus_nancymaae
ENSCSAVG00000007119	-	88	32.782	ENSACLG00000010147	polr3d	90	33.973	Astatotilapia_calliptera
ENSCSAVG00000007119	-	88	32.386	ENSACLG00000000074	zgc:171971	88	33.803	Astatotilapia_calliptera
ENSCSAVG00000007119	-	89	33.636	ENSAMXG00000019418	zgc:171971	87	35.152	Astyanax_mexicanus
ENSCSAVG00000007119	-	82	40.741	ENSBTAG00000010036	POLR3D	72	40.741	Bos_taurus
ENSCSAVG00000007119	-	82	40.741	ENSCJAG00000020278	POLR3D	66	40.741	Callithrix_jacchus
ENSCSAVG00000007119	-	82	40.123	ENSCAFG00000009455	POLR3D	91	32.124	Canis_familiaris
ENSCSAVG00000007119	-	82	40.123	ENSCAFG00020013027	POLR3D	91	32.124	Canis_lupus_dingo
ENSCSAVG00000007119	-	82	40.741	ENSCHIG00000012279	POLR3D	72	40.741	Capra_hircus
ENSCSAVG00000007119	-	82	40.741	ENSTSYG00000009055	POLR3D	72	40.741	Carlito_syrichta
ENSCSAVG00000007119	-	86	31.351	ENSCAPG00000010394	POLR3D	99	31.351	Cavia_aperea
ENSCSAVG00000007119	-	89	33.681	ENSCPOG00000003679	POLR3D	91	33.681	Cavia_porcellus
ENSCSAVG00000007119	-	90	33.509	ENSCCAG00000019817	POLR3D	91	33.246	Cebus_capucinus
ENSCSAVG00000007119	-	90	34.037	ENSCATG00000025950	POLR3D	91	33.596	Cercocebus_atys
ENSCSAVG00000007119	-	89	32.727	ENSCLAG00000014993	POLR3D	91	32.727	Chinchilla_lanigera
ENSCSAVG00000007119	-	90	34.037	ENSCSAG00000016525	POLR3D	91	33.596	Chlorocebus_sabaeus
ENSCSAVG00000007119	-	71	44.828	ENSCHOG00000000228	POLR3D	58	44.828	Choloepus_hoffmanni
ENSCSAVG00000007119	-	94	32.840	ENSCPBG00000001313	POLR3D	97	32.840	Chrysemys_picta_bellii
ENSCSAVG00000007119	-	97	68.696	ENSCING00000008141	-	98	68.605	Ciona_intestinalis
ENSCSAVG00000007119	-	90	33.858	ENSCANG00000043589	POLR3D	91	33.773	Colobus_angolensis_palliatus
ENSCSAVG00000007119	-	90	33.073	ENSCGRG00001010339	Polr3d	91	33.073	Cricetulus_griseus_chok1gshd
ENSCSAVG00000007119	-	90	33.073	ENSCGRG00000003956	Polr3d	91	33.073	Cricetulus_griseus_crigri
ENSCSAVG00000007119	-	88	36.228	ENSCSEG00000015509	zgc:171971	85	35.843	Cynoglossus_semilaevis
ENSCSAVG00000007119	-	90	32.603	ENSCSEG00000008123	polr3d	90	33.962	Cynoglossus_semilaevis
ENSCSAVG00000007119	-	88	33.242	ENSCVAG00000020687	polr3d	90	34.946	Cyprinodon_variegatus
ENSCSAVG00000007119	-	88	35.435	ENSCVAG00000009078	-	89	33.721	Cyprinodon_variegatus
ENSCSAVG00000007119	-	88	31.768	ENSDARG00000104516	polr3d	99	31.421	Danio_rerio
ENSCSAVG00000007119	-	88	33.143	ENSDARG00000042054	zgc:171971	86	33.429	Danio_rerio
ENSCSAVG00000007119	-	82	39.716	ENSDNOG00000013488	POLR3D	91	33.333	Dasypus_novemcinctus
ENSCSAVG00000007119	-	90	32.895	ENSDORG00000011174	Polr3d	91	32.898	Dipodomys_ordii
ENSCSAVG00000007119	-	82	40.426	ENSETEG00000016516	POLR3D	72	40.426	Echinops_telfairi
ENSCSAVG00000007119	-	68	31.529	ENSEBUG00000014414	polr3d	89	31.529	Eptatretus_burgeri
ENSCSAVG00000007119	-	82	41.358	ENSEASG00005018824	POLR3D	72	41.358	Equus_asinus_asinus
ENSCSAVG00000007119	-	82	41.358	ENSECAG00000025090	-	72	41.358	Equus_caballus
ENSCSAVG00000007119	-	90	33.333	ENSEEUG00000007632	POLR3D	91	33.333	Erinaceus_europaeus
ENSCSAVG00000007119	-	88	32.796	ENSELUG00000016978	polr3d	91	34.316	Esox_lucius
ENSCSAVG00000007119	-	93	32.970	ENSELUG00000017642	zgc:171971	89	32.698	Esox_lucius
ENSCSAVG00000007119	-	82	37.500	ENSFCAG00000005346	POLR3D	91	32.124	Felis_catus
ENSCSAVG00000007119	-	82	41.615	ENSFDAG00000010144	POLR3D	71	41.615	Fukomys_damarensis
ENSCSAVG00000007119	-	88	32.055	ENSFHEG00000000508	polr3d	91	34.066	Fundulus_heteroclitus
ENSCSAVG00000007119	-	88	34.463	ENSFHEG00000003803	-	87	33.333	Fundulus_heteroclitus
ENSCSAVG00000007119	-	93	34.347	ENSGMOG00000015819	zgc:171971	91	34.203	Gadus_morhua
ENSCSAVG00000007119	-	89	30.055	ENSGMOG00000006293	polr3d	97	32.258	Gadus_morhua
ENSCSAVG00000007119	-	78	32.229	ENSGALG00000032501	-	59	31.457	Gallus_gallus
ENSCSAVG00000007119	-	88	35.227	ENSGAFG00000009259	zgc:171971	94	33.952	Gambusia_affinis
ENSCSAVG00000007119	-	88	33.241	ENSGAFG00000010268	polr3d	90	34.332	Gambusia_affinis
ENSCSAVG00000007119	-	93	34.509	ENSGACG00000015436	zgc:171971	91	34.509	Gasterosteus_aculeatus
ENSCSAVG00000007119	-	88	33.151	ENSGACG00000011126	polr3d	90	33.514	Gasterosteus_aculeatus
ENSCSAVG00000007119	-	94	32.593	ENSGAGG00000023229	POLR3D	77	40.000	Gopherus_agassizii
ENSCSAVG00000007119	-	90	33.509	ENSGGOG00000007302	POLR3D	91	34.031	Gorilla_gorilla
ENSCSAVG00000007119	-	88	32.782	ENSHBUG00000012288	polr3d	90	33.973	Haplochromis_burtoni
ENSCSAVG00000007119	-	88	31.831	ENSHBUG00000020493	zgc:171971	96	32.047	Haplochromis_burtoni
ENSCSAVG00000007119	-	89	34.218	ENSHGLG00000015415	POLR3D	91	34.218	Heterocephalus_glaber_female
ENSCSAVG00000007119	-	89	34.218	ENSHGLG00100014950	POLR3D	91	34.218	Heterocephalus_glaber_male
ENSCSAVG00000007119	-	88	30.117	ENSHCOG00000018819	-	85	30.409	Hippocampus_comes
ENSCSAVG00000007119	-	88	31.233	ENSHCOG00000002228	polr3d	90	32.267	Hippocampus_comes
ENSCSAVG00000007119	-	88	32.286	ENSIPUG00000008608	zgc:171971	87	32.286	Ictalurus_punctatus
ENSCSAVG00000007119	-	87	38.710	ENSIPUG00000003480	polr3d	97	32.506	Ictalurus_punctatus
ENSCSAVG00000007119	-	82	40.123	ENSSTOG00000016519	POLR3D	91	32.632	Ictidomys_tridecemlineatus
ENSCSAVG00000007119	-	82	40.741	ENSJJAG00000006743	Polr3d	72	40.741	Jaculus_jaculus
ENSCSAVG00000007119	-	61	48.913	ENSKMAG00000005145	polr3d	90	33.607	Kryptolebias_marmoratus
ENSCSAVG00000007119	-	93	32.713	ENSLBEG00000009545	zgc:171971	91	32.115	Labrus_bergylta
ENSCSAVG00000007119	-	89	30.854	ENSLBEG00000003430	polr3d	90	31.793	Labrus_bergylta
ENSCSAVG00000007119	-	88	32.982	ENSLACG00000016654	POLR3D	91	33.943	Latimeria_chalumnae
ENSCSAVG00000007119	-	88	32.958	ENSLOCG00000006467	zgc:171971	88	35.211	Lepisosteus_oculatus
ENSCSAVG00000007119	-	62	47.368	ENSLOCG00000016080	polr3d	91	32.000	Lepisosteus_oculatus
ENSCSAVG00000007119	-	81	40.881	ENSLAFG00000001562	POLR3D	71	40.625	Loxodonta_africana
ENSCSAVG00000007119	-	90	34.037	ENSMFAG00000029141	POLR3D	91	33.596	Macaca_fascicularis
ENSCSAVG00000007119	-	90	34.383	ENSMMUG00000023226	POLR3D	91	33.596	Macaca_mulatta
ENSCSAVG00000007119	-	90	34.037	ENSMNEG00000039410	POLR3D	91	33.596	Macaca_nemestrina
ENSCSAVG00000007119	-	90	34.037	ENSMLEG00000031413	POLR3D	91	33.596	Mandrillus_leucophaeus
ENSCSAVG00000007119	-	88	33.241	ENSMAMG00000020617	zgc:171971	87	31.868	Mastacembelus_armatus
ENSCSAVG00000007119	-	88	32.967	ENSMAMG00000008914	polr3d	91	34.072	Mastacembelus_armatus
ENSCSAVG00000007119	-	88	32.386	ENSMZEG00005003175	zgc:171971	88	33.803	Maylandia_zebra
ENSCSAVG00000007119	-	88	32.782	ENSMZEG00005011442	polr3d	90	33.973	Maylandia_zebra
ENSCSAVG00000007119	-	90	33.333	ENSMAUG00000006844	Polr3d	91	33.333	Mesocricetus_auratus
ENSCSAVG00000007119	-	82	40.741	ENSMICG00000001049	POLR3D	72	40.741	Microcebus_murinus
ENSCSAVG00000007119	-	90	33.246	ENSMOCG00000005195	Polr3d	91	33.508	Microtus_ochrogaster
ENSCSAVG00000007119	-	88	33.056	ENSMMOG00000013845	polr3d	90	33.242	Mola_mola
ENSCSAVG00000007119	-	87	34.688	ENSMODG00000009491	POLR3D	91	34.688	Monodelphis_domestica
ENSCSAVG00000007119	-	93	33.687	ENSMALG00000005659	zgc:171971	89	32.902	Monopterus_albus
ENSCSAVG00000007119	-	88	32.597	ENSMALG00000002928	polr3d	90	33.423	Monopterus_albus
ENSCSAVG00000007119	-	82	40.741	MGP_CAROLIEiJ_G0019481	Polr3d	91	32.812	Mus_caroli
ENSCSAVG00000007119	-	82	40.741	ENSMUSG00000000776	Polr3d	91	32.812	Mus_musculus
ENSCSAVG00000007119	-	90	32.292	MGP_SPRETEiJ_G0020373	Polr3d	91	32.552	Mus_spretus
ENSCSAVG00000007119	-	82	38.194	ENSMPUG00000003653	POLR3D	91	32.383	Mustela_putorius_furo
ENSCSAVG00000007119	-	82	40.741	ENSMLUG00000002109	POLR3D	91	32.642	Myotis_lucifugus
ENSCSAVG00000007119	-	90	33.333	ENSNGAG00000013872	Polr3d	99	30.149	Nannospalax_galili
ENSCSAVG00000007119	-	88	34.066	ENSNBRG00000019106	polr3d	90	34.615	Neolamprologus_brichardi
ENSCSAVG00000007119	-	89	34.392	ENSMEUG00000000465	POLR3D	90	34.127	Notamacropus_eugenii
ENSCSAVG00000007119	-	90	32.383	ENSOPRG00000013146	POLR3D	91	32.984	Ochotona_princeps
ENSCSAVG00000007119	-	82	41.615	ENSODEG00000005884	POLR3D	71	41.615	Octodon_degus
ENSCSAVG00000007119	-	88	33.333	ENSONIG00000010634	polr3d	90	34.795	Oreochromis_niloticus
ENSCSAVG00000007119	-	88	32.955	ENSONIG00000007280	zgc:171971	88	34.278	Oreochromis_niloticus
ENSCSAVG00000007119	-	90	32.632	ENSOCUG00000017410	POLR3D	72	40.123	Oryctolagus_cuniculus
ENSCSAVG00000007119	-	89	35.440	ENSORLG00000011583	polr3d	92	35.440	Oryzias_latipes
ENSCSAVG00000007119	-	88	34.711	ENSORLG00020005668	polr3d	90	35.246	Oryzias_latipes_hni
ENSCSAVG00000007119	-	88	34.435	ENSORLG00015020291	polr3d	89	34.153	Oryzias_latipes_hsok
ENSCSAVG00000007119	-	88	33.609	ENSOMEG00000010120	polr3d	90	34.521	Oryzias_melastigma
ENSCSAVG00000007119	-	82	40.741	ENSOGAG00000004912	POLR3D	72	40.741	Otolemur_garnettii
ENSCSAVG00000007119	-	82	40.741	ENSOARG00000010372	-	57	40.741	Ovis_aries
ENSCSAVG00000007119	-	90	33.509	ENSPPAG00000029591	POLR3D	91	34.031	Pan_paniscus
ENSCSAVG00000007119	-	82	37.500	ENSPPRG00000022827	POLR3D	91	32.124	Panthera_pardus
ENSCSAVG00000007119	-	82	37.500	ENSPTIG00000018239	POLR3D	91	32.124	Panthera_tigris_altaica
ENSCSAVG00000007119	-	90	33.509	ENSPTRG00000020056	POLR3D	91	34.031	Pan_troglodytes
ENSCSAVG00000007119	-	90	34.037	ENSPANG00000009440	POLR3D	91	33.596	Papio_anubis
ENSCSAVG00000007119	-	65	44.037	ENSPKIG00000006727	polr3d	91	33.156	Paramormyrops_kingsleyae
ENSCSAVG00000007119	-	88	35.574	ENSPKIG00000025283	zgc:171971	86	35.574	Paramormyrops_kingsleyae
ENSCSAVG00000007119	-	83	38.356	ENSPSIG00000006113	POLR3D	72	38.356	Pelodiscus_sinensis
ENSCSAVG00000007119	-	93	32.558	ENSPMGG00000021658	polr3d	96	33.333	Periophthalmus_magnuspinnatus
ENSCSAVG00000007119	-	90	33.159	ENSPEMG00000023314	Polr3d	91	33.159	Peromyscus_maniculatus_bairdii
ENSCSAVG00000007119	-	89	34.840	ENSPCIG00000012699	POLR3D	90	34.840	Phascolarctos_cinereus
ENSCSAVG00000007119	-	88	33.518	ENSPFOG00000012698	polr3d	90	34.615	Poecilia_formosa
ENSCSAVG00000007119	-	88	34.943	ENSPFOG00000011089	zgc:171971	93	34.225	Poecilia_formosa
ENSCSAVG00000007119	-	88	33.241	ENSPLAG00000008149	polr3d	90	34.341	Poecilia_latipinna
ENSCSAVG00000007119	-	88	33.856	ENSPLAG00000003645	zgc:171971	90	31.519	Poecilia_latipinna
ENSCSAVG00000007119	-	88	35.227	ENSPMEG00000016953	zgc:171971	93	34.492	Poecilia_mexicana
ENSCSAVG00000007119	-	88	33.702	ENSPMEG00000002702	polr3d	90	34.795	Poecilia_mexicana
ENSCSAVG00000007119	-	88	34.844	ENSPREG00000003755	-	97	32.908	Poecilia_reticulata
ENSCSAVG00000007119	-	88	33.978	ENSPREG00000007593	polr3d	90	35.068	Poecilia_reticulata
ENSCSAVG00000007119	-	90	33.947	ENSPPYG00000018419	POLR3D	91	34.031	Pongo_abelii
ENSCSAVG00000007119	-	90	30.628	ENSPCAG00000001971	POLR3D	91	30.890	Procavia_capensis
ENSCSAVG00000007119	-	82	40.741	ENSPCOG00000028134	POLR3D	91	32.546	Propithecus_coquereli
ENSCSAVG00000007119	-	82	40.123	ENSPVAG00000009873	POLR3D	91	32.124	Pteropus_vampyrus
ENSCSAVG00000007119	-	87	30.286	ENSPNYG00000008902	zgc:171971	79	33.333	Pundamilia_nyererei
ENSCSAVG00000007119	-	88	32.782	ENSPNYG00000016306	polr3d	90	33.973	Pundamilia_nyererei
ENSCSAVG00000007119	-	88	30.400	ENSPNAG00000022324	polr3d	90	31.135	Pygocentrus_nattereri
ENSCSAVG00000007119	-	88	34.770	ENSPNAG00000018934	zgc:171971	88	34.188	Pygocentrus_nattereri
ENSCSAVG00000007119	-	90	33.594	ENSRNOG00000010028	Polr3d	91	33.594	Rattus_norvegicus
ENSCSAVG00000007119	-	82	40.741	ENSRBIG00000035406	POLR3D	91	33.596	Rhinopithecus_bieti
ENSCSAVG00000007119	-	82	40.741	ENSRROG00000037278	POLR3D	91	33.596	Rhinopithecus_roxellana
ENSCSAVG00000007119	-	90	33.509	ENSSBOG00000024956	POLR3D	91	33.246	Saimiri_boliviensis_boliviensis
ENSCSAVG00000007119	-	83	32.203	ENSSHAG00000018257	POLR3D	99	32.203	Sarcophilus_harrisii
ENSCSAVG00000007119	-	68	32.624	ENSSFOG00015011547	zgc:171971	90	34.835	Scleropages_formosus
ENSCSAVG00000007119	-	64	46.316	ENSSFOG00015010611	polr3d	89	33.067	Scleropages_formosus
ENSCSAVG00000007119	-	88	31.956	ENSSMAG00000006271	polr3d	90	32.877	Scophthalmus_maximus
ENSCSAVG00000007119	-	88	35.613	ENSSMAG00000001465	zgc:171971	86	34.722	Scophthalmus_maximus
ENSCSAVG00000007119	-	88	32.698	ENSSDUG00000020718	polr3d	90	33.515	Seriola_dumerili
ENSCSAVG00000007119	-	90	32.368	ENSSDUG00000016019	zgc:171971	89	31.443	Seriola_dumerili
ENSCSAVG00000007119	-	88	32.970	ENSSLDG00000009643	polr3d	90	33.515	Seriola_lalandi_dorsalis
ENSCSAVG00000007119	-	90	32.447	ENSSLDG00000015968	zgc:171971	89	31.701	Seriola_lalandi_dorsalis
ENSCSAVG00000007119	-	81	39.007	ENSSARG00000012844	POLR3D	90	30.709	Sorex_araneus
ENSCSAVG00000007119	-	90	33.245	ENSSPUG00000000719	POLR3D	91	33.509	Sphenodon_punctatus
ENSCSAVG00000007119	-	88	34.239	ENSSPAG00000023326	polr3d	90	35.150	Stegastes_partitus
ENSCSAVG00000007119	-	93	33.994	ENSSPAG00000010384	zgc:171971	90	34.463	Stegastes_partitus
ENSCSAVG00000007119	-	82	41.358	ENSSSCG00000009622	POLR3D	72	41.358	Sus_scrofa
ENSCSAVG00000007119	-	88	32.970	ENSTRUG00000003555	polr3d	90	33.880	Takifugu_rubripes
ENSCSAVG00000007119	-	88	33.333	ENSTNIG00000006282	polr3d	91	34.521	Tetraodon_nigroviridis
ENSCSAVG00000007119	-	90	33.159	ENSTTRG00000012745	POLR3D	91	32.292	Tursiops_truncatus
ENSCSAVG00000007119	-	69	38.000	ENSUAMG00000026868	POLR3D	87	31.471	Ursus_americanus
ENSCSAVG00000007119	-	82	38.194	ENSUMAG00000005099	POLR3D	91	32.124	Ursus_maritimus
ENSCSAVG00000007119	-	82	40.123	ENSVVUG00000005290	POLR3D	91	32.124	Vulpes_vulpes
ENSCSAVG00000007119	-	90	32.115	ENSXETG00000010534	polr3d	92	32.817	Xenopus_tropicalis
ENSCSAVG00000007119	-	88	36.599	ENSXCOG00000015872	polr3d	90	37.572	Xiphophorus_couchianus
ENSCSAVG00000007119	-	88	34.375	ENSXMAG00000014555	-	93	33.690	Xiphophorus_maculatus
ENSCSAVG00000007119	-	88	33.795	ENSXMAG00000001872	polr3d	90	35.150	Xiphophorus_maculatus