EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000007144 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 959 bases
Position: chrreftig_54:847805-848763
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000012148	Exo_endo_phos	PF03372.23	9.6e-10	1	1
ENSCSAVP00000012147	Exo_endo_phos	PF03372.23	2.9e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000012288	-	759	-	ENSCSAVP00000012148	253 (aa)	-	H2Z3I6
ENSCSAVT00000012287	-	909	-	ENSCSAVP00000012147	303 (aa)	-	H2Z3I5

Gene Model

Click here to download ENSCSAVG00000007144's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000007144's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000007144	-	100	52.510	ENSG00000100823	APEX1	83	51.698	Homo_sapiens
ENSCSAVG00000007144	-	100	52.326	ENSAPOG00000017002	apex1	88	50.746	Acanthochromis_polyacanthus
ENSCSAVG00000007144	-	100	52.510	ENSAMEG00000005418	APEX1	97	47.319	Ailuropoda_melanoleuca
ENSCSAVG00000007144	-	100	55.426	ENSACIG00000010653	apex1	90	53.731	Amphilophus_citrinellus
ENSCSAVG00000007144	-	100	53.101	ENSAOCG00000009649	apex1	86	51.119	Amphiprion_ocellaris
ENSCSAVG00000007144	-	100	53.101	ENSAPEG00000021453	apex1	86	51.493	Amphiprion_percula
ENSCSAVG00000007144	-	99	55.253	ENSATEG00000002883	apex1	93	49.505	Anabas_testudineus
ENSCSAVG00000007144	-	100	56.589	ENSACAG00000008099	APEX1	99	50.637	Anolis_carolinensis
ENSCSAVG00000007144	-	100	52.510	ENSANAG00000030117	APEX1	83	51.698	Aotus_nancymaae
ENSCSAVG00000007144	-	100	55.039	ENSACLG00000018441	apex1	96	49.671	Astatotilapia_calliptera
ENSCSAVG00000007144	-	100	53.101	ENSAMXG00000034699	apex1	86	51.866	Astyanax_mexicanus
ENSCSAVG00000007144	-	100	53.282	ENSBTAG00000002745	APEX1	94	49.833	Bos_taurus
ENSCSAVG00000007144	-	99	41.406	WBGene00001372	exo-3	94	39.927	Caenorhabditis_elegans
ENSCSAVG00000007144	-	100	52.510	ENSCJAG00000009726	APEX1	83	51.698	Callithrix_jacchus
ENSCSAVG00000007144	-	100	52.510	ENSCAFG00000032033	APEX1	98	47.604	Canis_familiaris
ENSCSAVG00000007144	-	100	52.510	ENSCAFG00020014377	-	98	47.604	Canis_lupus_dingo
ENSCSAVG00000007144	-	100	53.668	ENSCHIG00000007298	-	94	50.167	Capra_hircus
ENSCSAVG00000007144	-	100	41.313	ENSCHIG00000014537	-	84	41.132	Capra_hircus
ENSCSAVG00000007144	-	100	53.668	ENSTSYG00000034813	APEX1	83	52.075	Carlito_syrichta
ENSCSAVG00000007144	-	92	51.681	ENSCAPG00000016235	APEX1	92	51.681	Cavia_aperea
ENSCSAVG00000007144	-	100	53.282	ENSCPOG00000030909	APEX1	83	52.453	Cavia_porcellus
ENSCSAVG00000007144	-	100	52.510	ENSCCAG00000033056	-	83	51.698	Cebus_capucinus
ENSCSAVG00000007144	-	100	45.349	ENSCCAG00000031931	-	83	45.283	Cebus_capucinus
ENSCSAVG00000007144	-	100	52.896	ENSCATG00000015580	APEX1	83	52.075	Cercocebus_atys
ENSCSAVG00000007144	-	100	52.896	ENSCLAG00000001002	APEX1	90	48.667	Chinchilla_lanigera
ENSCSAVG00000007144	-	100	52.896	ENSCSAG00000016670	-	83	52.075	Chlorocebus_sabaeus
ENSCSAVG00000007144	-	100	52.896	ENSCSAG00000016685	-	83	52.075	Chlorocebus_sabaeus
ENSCSAVG00000007144	-	100	55.426	ENSCPBG00000009567	APEX1	93	48.101	Chrysemys_picta_bellii
ENSCSAVG00000007144	-	100	78.599	ENSCING00000008137	-	90	73.944	Ciona_intestinalis
ENSCSAVG00000007144	-	100	52.510	ENSCANG00000030726	APEX1	83	51.698	Colobus_angolensis_palliatus
ENSCSAVG00000007144	-	100	53.282	ENSCGRG00001017046	Apex1	100	47.634	Cricetulus_griseus_chok1gshd
ENSCSAVG00000007144	-	100	53.282	ENSCGRG00000008984	Apex1	100	47.634	Cricetulus_griseus_crigri
ENSCSAVG00000007144	-	100	52.713	ENSCSEG00000017499	apex1	86	50.746	Cynoglossus_semilaevis
ENSCSAVG00000007144	-	100	54.651	ENSCVAG00000022075	apex1	86	53.358	Cyprinodon_variegatus
ENSCSAVG00000007144	-	100	54.651	ENSDARG00000045843	apex1	86	52.985	Danio_rerio
ENSCSAVG00000007144	-	100	50.000	ENSDNOG00000042234	APEX1	94	45.687	Dasypus_novemcinctus
ENSCSAVG00000007144	-	100	52.124	ENSDORG00000001616	Apex1	90	47.667	Dipodomys_ordii
ENSCSAVG00000007144	-	100	54.054	ENSETEG00000004855	-	93	48.232	Echinops_telfairi
ENSCSAVG00000007144	-	92	44.118	ENSEBUG00000000622	-	92	44.958	Eptatretus_burgeri
ENSCSAVG00000007144	-	100	52.510	ENSEASG00005017489	APEX1	66	47.667	Equus_asinus_asinus
ENSCSAVG00000007144	-	100	52.510	ENSECAG00000022325	APEX1	73	47.667	Equus_caballus
ENSCSAVG00000007144	-	96	51.406	ENSEEUG00000012569	APEX1	99	45.364	Erinaceus_europaeus
ENSCSAVG00000007144	-	100	51.938	ENSELUG00000021706	apex1	93	46.580	Esox_lucius
ENSCSAVG00000007144	-	100	52.510	ENSFCAG00000030869	APEX1	83	51.698	Felis_catus
ENSCSAVG00000007144	-	100	52.510	ENSFDAG00000006120	APEX1	90	48.000	Fukomys_damarensis
ENSCSAVG00000007144	-	100	54.651	ENSFHEG00000009031	apex1	72	52.985	Fundulus_heteroclitus
ENSCSAVG00000007144	-	100	50.973	ENSGMOG00000007943	apex1	84	50.958	Gadus_morhua
ENSCSAVG00000007144	-	100	53.876	ENSGAFG00000005311	apex1	86	52.612	Gambusia_affinis
ENSCSAVG00000007144	-	100	53.488	ENSGACG00000019497	apex1	99	52.060	Gasterosteus_aculeatus
ENSCSAVG00000007144	-	100	55.426	ENSGAGG00000014999	APEX1	90	49.169	Gopherus_agassizii
ENSCSAVG00000007144	-	100	52.124	ENSGGOG00000002128	APEX1	83	51.321	Gorilla_gorilla
ENSCSAVG00000007144	-	100	54.651	ENSHBUG00000005894	apex1	100	48.418	Haplochromis_burtoni
ENSCSAVG00000007144	-	100	52.896	ENSHGLG00000002848	APEX1	94	49.833	Heterocephalus_glaber_female
ENSCSAVG00000007144	-	100	52.896	ENSHGLG00100017878	APEX1	94	49.833	Heterocephalus_glaber_male
ENSCSAVG00000007144	-	100	53.876	ENSHCOG00000009961	apex1	86	52.612	Hippocampus_comes
ENSCSAVG00000007144	-	100	52.713	ENSIPUG00000005799	apex1	94	48.288	Ictalurus_punctatus
ENSCSAVG00000007144	-	100	53.282	ENSSTOG00000010096	APEX1	90	48.667	Ictidomys_tridecemlineatus
ENSCSAVG00000007144	-	99	45.136	ENSJJAG00000003660	-	93	42.122	Jaculus_jaculus
ENSCSAVG00000007144	-	100	48.249	ENSJJAG00000020465	-	95	44.516	Jaculus_jaculus
ENSCSAVG00000007144	-	100	52.124	ENSJJAG00000012067	-	93	47.267	Jaculus_jaculus
ENSCSAVG00000007144	-	100	53.101	ENSKMAG00000021171	apex1	99	47.619	Kryptolebias_marmoratus
ENSCSAVG00000007144	-	100	54.651	ENSLBEG00000010248	apex1	96	49.013	Labrus_bergylta
ENSCSAVG00000007144	-	99	56.031	ENSLACG00000008617	APEX1	94	51.351	Latimeria_chalumnae
ENSCSAVG00000007144	-	100	54.264	ENSLOCG00000015516	apex1	84	52.612	Lepisosteus_oculatus
ENSCSAVG00000007144	-	100	53.668	ENSLAFG00000021872	APEX1	84	52.612	Loxodonta_africana
ENSCSAVG00000007144	-	100	52.896	ENSMFAG00000002565	APEX1	94	47.883	Macaca_fascicularis
ENSCSAVG00000007144	-	100	52.896	ENSMMUG00000048039	APEX1	92	49.153	Macaca_mulatta
ENSCSAVG00000007144	-	100	52.896	ENSMNEG00000036944	APEX1	92	49.153	Macaca_nemestrina
ENSCSAVG00000007144	-	100	52.896	ENSMLEG00000042125	APEX1	83	52.075	Mandrillus_leucophaeus
ENSCSAVG00000007144	-	100	54.264	ENSMAMG00000023526	apex1	99	48.889	Mastacembelus_armatus
ENSCSAVG00000007144	-	100	55.039	ENSMZEG00005014187	apex1	96	49.671	Maylandia_zebra
ENSCSAVG00000007144	-	100	52.896	ENSMAUG00000013994	Apex1	84	52.075	Mesocricetus_auratus
ENSCSAVG00000007144	-	100	53.282	ENSMICG00000043554	APEX1	90	48.333	Microcebus_murinus
ENSCSAVG00000007144	-	100	52.510	ENSMOCG00000013721	Apex1	100	47.634	Microtus_ochrogaster
ENSCSAVG00000007144	-	100	52.124	ENSMMOG00000010031	apex1	84	50.186	Mola_mola
ENSCSAVG00000007144	-	100	53.668	ENSMODG00000007125	APEX1	97	48.544	Monodelphis_domestica
ENSCSAVG00000007144	-	100	50.980	ENSMALG00000011699	apex1	71	51.362	Monopterus_albus
ENSCSAVG00000007144	-	99	53.876	MGP_CAROLIEiJ_G0019209	Apex1	83	52.453	Mus_caroli
ENSCSAVG00000007144	-	100	52.896	ENSMUSG00000035960	Apex1	100	47.634	Mus_musculus
ENSCSAVG00000007144	-	100	52.896	MGP_PahariEiJ_G0030232	Apex1	100	47.634	Mus_pahari
ENSCSAVG00000007144	-	100	52.896	MGP_SPRETEiJ_G0020101	Apex1	100	47.634	Mus_spretus
ENSCSAVG00000007144	-	100	53.282	ENSMLUG00000028957	APEX1	83	52.453	Myotis_lucifugus
ENSCSAVG00000007144	-	85	41.096	ENSNGAG00000021748	-	82	36.194	Nannospalax_galili
ENSCSAVG00000007144	-	100	52.124	ENSNGAG00000002725	-	99	47.188	Nannospalax_galili
ENSCSAVG00000007144	-	100	55.039	ENSNBRG00000005334	apex1	88	49.671	Neolamprologus_brichardi
ENSCSAVG00000007144	-	100	52.490	ENSNLEG00000010839	APEX1	85	51.698	Nomascus_leucogenys
ENSCSAVG00000007144	-	100	54.054	ENSMEUG00000014519	APEX1	100	49.363	Notamacropus_eugenii
ENSCSAVG00000007144	-	100	53.668	ENSOPRG00000014029	APEX1	90	48.667	Ochotona_princeps
ENSCSAVG00000007144	-	96	42.000	ENSODEG00000004777	-	97	39.604	Octodon_degus
ENSCSAVG00000007144	-	100	51.737	ENSODEG00000001703	-	84	51.321	Octodon_degus
ENSCSAVG00000007144	-	100	41.699	ENSODEG00000006583	-	82	41.481	Octodon_degus
ENSCSAVG00000007144	-	100	55.039	ENSONIG00000012089	apex1	96	49.671	Oreochromis_niloticus
ENSCSAVG00000007144	-	100	52.510	ENSOANG00000008836	APEX1	71	50.865	Ornithorhynchus_anatinus
ENSCSAVG00000007144	-	100	53.668	ENSOCUG00000005022	APEX1	83	52.830	Oryctolagus_cuniculus
ENSCSAVG00000007144	-	100	55.039	ENSORLG00000012378	apex1	99	50.159	Oryzias_latipes
ENSCSAVG00000007144	-	100	55.039	ENSORLG00020021371	apex1	99	50.159	Oryzias_latipes_hni
ENSCSAVG00000007144	-	100	55.039	ENSORLG00015020089	apex1	99	50.159	Oryzias_latipes_hsok
ENSCSAVG00000007144	-	100	53.876	ENSOMEG00000018876	apex1	99	48.571	Oryzias_melastigma
ENSCSAVG00000007144	-	100	45.174	ENSOGAG00000029355	-	95	40.256	Otolemur_garnettii
ENSCSAVG00000007144	-	100	52.896	ENSOGAG00000013335	-	90	48.667	Otolemur_garnettii
ENSCSAVG00000007144	-	96	50.602	ENSOARG00000001876	-	94	47.405	Ovis_aries
ENSCSAVG00000007144	-	100	53.668	ENSOARG00000019740	-	94	50.167	Ovis_aries
ENSCSAVG00000007144	-	100	44.015	ENSOARG00000014424	-	94	42.712	Ovis_aries
ENSCSAVG00000007144	-	100	52.510	ENSPPAG00000038760	APEX1	85	51.698	Pan_paniscus
ENSCSAVG00000007144	-	100	52.510	ENSPPRG00000011794	APEX1	83	51.698	Panthera_pardus
ENSCSAVG00000007144	-	100	52.510	ENSPTIG00000014829	APEX1	83	51.698	Panthera_tigris_altaica
ENSCSAVG00000007144	-	100	52.510	ENSPTRG00000006093	APEX1	85	51.698	Pan_troglodytes
ENSCSAVG00000007144	-	100	52.896	ENSPANG00000022757	APEX1	83	52.075	Papio_anubis
ENSCSAVG00000007144	-	100	53.876	ENSPKIG00000003504	apex1	99	47.937	Paramormyrops_kingsleyae
ENSCSAVG00000007144	-	92	52.321	ENSPMGG00000016596	apex1	71	52.321	Periophthalmus_magnuspinnatus
ENSCSAVG00000007144	-	100	52.896	ENSPEMG00000019097	Apex1	100	47.634	Peromyscus_maniculatus_bairdii
ENSCSAVG00000007144	-	100	54.054	ENSPMAG00000007275	-	92	52.963	Petromyzon_marinus
ENSCSAVG00000007144	-	100	53.668	ENSPCIG00000023274	APEX1	97	50.162	Phascolarctos_cinereus
ENSCSAVG00000007144	-	100	54.264	ENSPFOG00000004178	apex1	86	52.985	Poecilia_formosa
ENSCSAVG00000007144	-	100	54.264	ENSPLAG00000012779	apex1	99	50.159	Poecilia_latipinna
ENSCSAVG00000007144	-	100	54.264	ENSPMEG00000019623	apex1	86	52.985	Poecilia_mexicana
ENSCSAVG00000007144	-	100	54.264	ENSPREG00000014298	apex1	95	51.186	Poecilia_reticulata
ENSCSAVG00000007144	-	100	52.510	ENSPPYG00000005565	APEX1	83	51.698	Pongo_abelii
ENSCSAVG00000007144	-	100	54.475	ENSPCAG00000010376	APEX1	99	48.254	Procavia_capensis
ENSCSAVG00000007144	-	100	52.896	ENSPCOG00000021564	APEX1	90	48.000	Propithecus_coquereli
ENSCSAVG00000007144	-	100	52.896	ENSPVAG00000010736	APEX1	83	52.075	Pteropus_vampyrus
ENSCSAVG00000007144	-	100	55.039	ENSPNYG00000023940	apex1	96	49.671	Pundamilia_nyererei
ENSCSAVG00000007144	-	95	52.846	ENSPNAG00000020897	apex1	93	48.780	Pygocentrus_nattereri
ENSCSAVG00000007144	-	100	52.510	ENSRNOG00000009663	Apex1	100	47.319	Rattus_norvegicus
ENSCSAVG00000007144	-	100	52.510	ENSRBIG00000038325	APEX1	82	51.698	Rhinopithecus_bieti
ENSCSAVG00000007144	-	100	52.510	ENSSBOG00000018921	-	83	51.698	Saimiri_boliviensis_boliviensis
ENSCSAVG00000007144	-	100	45.349	ENSSBOG00000031372	-	86	45.211	Saimiri_boliviensis_boliviensis
ENSCSAVG00000007144	-	100	53.435	ENSSHAG00000013524	APEX1	83	52.985	Sarcophilus_harrisii
ENSCSAVG00000007144	-	100	51.938	ENSSFOG00015001948	apex1	96	48.013	Scleropages_formosus
ENSCSAVG00000007144	-	100	51.550	ENSSMAG00000013348	apex1	99	45.886	Scophthalmus_maximus
ENSCSAVG00000007144	-	100	53.101	ENSSDUG00000016377	apex1	98	48.571	Seriola_dumerili
ENSCSAVG00000007144	-	100	53.876	ENSSLDG00000023005	apex1	99	49.206	Seriola_lalandi_dorsalis
ENSCSAVG00000007144	-	99	52.529	ENSSPUG00000000531	APEX1	94	50.000	Sphenodon_punctatus
ENSCSAVG00000007144	-	100	53.101	ENSSPAG00000000458	apex1	99	47.573	Stegastes_partitus
ENSCSAVG00000007144	-	100	52.124	ENSSSCG00000040060	-	94	49.498	Sus_scrofa
ENSCSAVG00000007144	-	92	44.304	ENSTGUG00000014378	APEX1	100	44.304	Taeniopygia_guttata
ENSCSAVG00000007144	-	100	51.550	ENSTRUG00000004268	apex1	93	45.079	Takifugu_rubripes
ENSCSAVG00000007144	-	99	51.362	ENSTNIG00000005778	apex1	87	48.881	Tetraodon_nigroviridis
ENSCSAVG00000007144	-	100	51.351	ENSTBEG00000006405	APEX1	83	50.566	Tupaia_belangeri
ENSCSAVG00000007144	-	92	49.789	ENSTTRG00000007860	APEX1	100	50.213	Tursiops_truncatus
ENSCSAVG00000007144	-	100	52.510	ENSUAMG00000010457	APEX1	94	46.519	Ursus_americanus
ENSCSAVG00000007144	-	100	52.510	ENSUMAG00000009178	APEX1	94	46.519	Ursus_maritimus
ENSCSAVG00000007144	-	92	47.679	ENSVPAG00000005083	APEX1	100	48.085	Vicugna_pacos
ENSCSAVG00000007144	-	100	52.510	ENSVVUG00000009010	APEX1	98	47.604	Vulpes_vulpes
ENSCSAVG00000007144	-	100	52.713	ENSXETG00000024773	apex1	98	46.541	Xenopus_tropicalis
ENSCSAVG00000007144	-	100	54.264	ENSXCOG00000015233	apex1	86	52.985	Xiphophorus_couchianus
ENSCSAVG00000007144	-	100	54.264	ENSXMAG00000006195	apex1	86	52.985	Xiphophorus_maculatus