EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000007149 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 4789 bases
Position: chrreftig_48:443427-448215
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000012154	RRM_1	PF00076.22	1.5e-35	1	2
ENSCSAVP00000012154	RRM_1	PF00076.22	1.5e-35	2	2
ENSCSAVP00000012153	RRM_1	PF00076.22	6.9e-19	1	2
ENSCSAVP00000012153	RRM_1	PF00076.22	6.9e-19	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000012294	-	1012	-	ENSCSAVP00000012154	314 (aa)	-	H2Z3J2
ENSCSAVT00000012293	-	1290	-	ENSCSAVP00000012153	329 (aa)	-	H2Z3J1

Gene Model

Click here to download ENSCSAVG00000007149's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000007149's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000007149	-	94	43.491	ENSG00000106344	RBM28	54	43.768	Homo_sapiens
ENSCSAVG00000007149	-	95	42.647	ENSAMEG00000004776	RBM28	58	35.154	Ailuropoda_melanoleuca
ENSCSAVG00000007149	-	94	41.284	ENSACIG00000023153	rbm28	72	42.378	Amphilophus_citrinellus
ENSCSAVG00000007149	-	94	42.690	ENSANAG00000033922	RBM28	55	42.899	Aotus_nancymaae
ENSCSAVG00000007149	-	97	42.042	ENSAMXG00000000763	rbm28	79	42.042	Astyanax_mexicanus
ENSCSAVG00000007149	-	94	42.262	ENSBTAG00000017001	RBM28	55	42.353	Bos_taurus
ENSCSAVG00000007149	-	94	42.105	ENSCJAG00000017731	RBM28	63	42.319	Callithrix_jacchus
ENSCSAVG00000007149	-	95	43.027	ENSCAFG00000001667	RBM28	53	56.250	Canis_familiaris
ENSCSAVG00000007149	-	95	43.027	ENSCAFG00020021648	RBM28	53	56.250	Canis_lupus_dingo
ENSCSAVG00000007149	-	95	43.658	ENSTSYG00000002892	RBM28	53	54.206	Carlito_syrichta
ENSCSAVG00000007149	-	94	42.647	ENSCCAG00000035105	RBM28	54	42.857	Cebus_capucinus
ENSCSAVG00000007149	-	95	43.605	ENSCATG00000040497	RBM28	54	43.478	Cercocebus_atys
ENSCSAVG00000007149	-	95	42.647	ENSDORG00000004184	Rbm28	66	42.941	Dipodomys_ordii
ENSCSAVG00000007149	-	96	34.431	FBgn0260456	CG4806	50	34.431	Drosophila_melanogaster
ENSCSAVG00000007149	-	95	43.323	ENSFCAG00000000946	RBM28	55	43.195	Felis_catus
ENSCSAVG00000007149	-	94	42.183	ENSGAFG00000004802	rbm28	73	44.083	Gambusia_affinis
ENSCSAVG00000007149	-	94	44.343	ENSGACG00000012612	rbm28	56	43.452	Gasterosteus_aculeatus
ENSCSAVG00000007149	-	93	39.241	ENSIPUG00000007103	rbm28	68	39.241	Ictalurus_punctatus
ENSCSAVG00000007149	-	54	56.250	ENSLACG00000010485	-	71	56.250	Latimeria_chalumnae
ENSCSAVG00000007149	-	94	43.402	ENSMFAG00000031036	RBM28	54	43.478	Macaca_fascicularis
ENSCSAVG00000007149	-	94	43.402	ENSMMUG00000007250	RBM28	54	43.478	Macaca_mulatta
ENSCSAVG00000007149	-	94	43.402	ENSMNEG00000036970	RBM28	54	43.478	Macaca_nemestrina
ENSCSAVG00000007149	-	94	41.875	ENSMMOG00000008600	rbm28	69	41.875	Mola_mola
ENSCSAVG00000007149	-	95	43.824	ENSMUSG00000029701	Rbm28	53	55.670	Mus_musculus
ENSCSAVG00000007149	-	95	44.412	MGP_SPRETEiJ_G0029162	Rbm28	53	55.670	Mus_spretus
ENSCSAVG00000007149	-	94	43.491	ENSNLEG00000012307	RBM28	54	43.567	Nomascus_leucogenys
ENSCSAVG00000007149	-	94	42.814	ENSODEG00000013217	-	50	42.899	Octodon_degus
ENSCSAVG00000007149	-	96	55.789	ENSORLG00015015030	rbm28	52	55.789	Oryzias_latipes_hsok
ENSCSAVG00000007149	-	94	42.059	ENSOMEG00000007801	rbm28	55	58.427	Oryzias_melastigma
ENSCSAVG00000007149	-	95	42.012	ENSOGAG00000006011	RBM28	54	42.012	Otolemur_garnettii
ENSCSAVG00000007149	-	94	44.083	ENSPPAG00000041730	RBM28	54	44.023	Pan_paniscus
ENSCSAVG00000007149	-	95	43.323	ENSPPRG00000004420	RBM28	55	43.195	Panthera_pardus
ENSCSAVG00000007149	-	95	43.323	ENSPTIG00000008550	RBM28	55	43.195	Panthera_tigris_altaica
ENSCSAVG00000007149	-	94	43.491	ENSPTRG00000019659	RBM28	54	43.768	Pan_troglodytes
ENSCSAVG00000007149	-	94	43.402	ENSPANG00000022295	RBM28	54	43.478	Papio_anubis
ENSCSAVG00000007149	-	98	43.807	ENSPMGG00000012840	rbm28	50	43.807	Periophthalmus_magnuspinnatus
ENSCSAVG00000007149	-	59	53.061	ENSPMAG00000002948	-	51	53.061	Petromyzon_marinus
ENSCSAVG00000007149	-	94	43.787	ENSPREG00000014287	rbm28	56	44.675	Poecilia_reticulata
ENSCSAVG00000007149	-	95	41.840	ENSPCOG00000016797	RBM28	53	41.840	Propithecus_coquereli
ENSCSAVG00000007149	-	94	44.048	ENSRBIG00000033990	RBM28	54	44.118	Rhinopithecus_bieti
ENSCSAVG00000007149	-	94	43.695	ENSRROG00000040747	RBM28	54	43.768	Rhinopithecus_roxellana
ENSCSAVG00000007149	-	94	41.956	ENSSMAG00000003885	rbm28	68	42.271	Scophthalmus_maximus
ENSCSAVG00000007149	-	94	43.109	ENSSDUG00000014270	rbm28	65	43.109	Seriola_dumerili
ENSCSAVG00000007149	-	94	40.673	ENSSPUG00000000838	RBM28	61	40.785	Sphenodon_punctatus
ENSCSAVG00000007149	-	94	40.483	ENSTNIG00000017962	rbm28	50	57.609	Tetraodon_nigroviridis
ENSCSAVG00000007149	-	94	42.727	ENSXCOG00000020357	rbm28	69	43.636	Xiphophorus_couchianus