EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCSAVG00000007184 (Gene tree)
Gene ID
-
Gene Symbol
-
Alias
-
Full Name
-
Gene Type
protein_coding
Species
Ciona_savignyi
Status
putative
Strand
Plus strand
Length
20344 bases
Position
chrreftig_117:635712-656055
Accession
-
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSAVP00000012213RNA_pol_Rpb1_5PF04998.173.5e-9211
ENSCSAVP00000012210RNA_pol_Rpb1_5PF04998.173.9e-9211
ENSCSAVP00000012209RNA_pol_Rpb1_5PF04998.174.9e-9211
ENSCSAVP00000012211RNA_pol_Rpb1_5PF04998.175.3e-9211
ENSCSAVP00000012212RNA_pol_Rpb1_5PF04998.175.8e-9211
ENSCSAVP00000012205RNA_pol_Rpb1_5PF04998.175.9e-9211
ENSCSAVP00000012206RNA_pol_Rpb1_5PF04998.176.3e-9211
ENSCSAVP00000012208RNA_pol_Rpb1_5PF04998.171.1e-9111
ENSCSAVP00000012207RNA_pol_Rpb1_5PF04998.171.3e-9111
ENSCSAVP00000012214RNA_pol_Rpb1_5PF04998.172e-9111
ENSCSAVP00000012214RNA_pol_Rpb1_4PF05000.179.1e-2111
ENSCSAVP00000012206RNA_pol_Rpb1_4PF05000.171e-2011
ENSCSAVP00000012205RNA_pol_Rpb1_4PF05000.171.2e-2011
ENSCSAVP00000012208RNA_pol_Rpb1_4PF05000.171.9e-2011
ENSCSAVP00000012207RNA_pol_Rpb1_4PF05000.171.9e-2011
ENSCSAVP00000012213RNA_pol_Rpb1_4PF05000.172.5e-2011
ENSCSAVP00000012212RNA_pol_Rpb1_4PF05000.172.5e-2011
ENSCSAVP00000012210RNA_pol_Rpb1_4PF05000.172.8e-2011
ENSCSAVP00000012209RNA_pol_Rpb1_4PF05000.172.9e-2011
ENSCSAVP00000012211RNA_pol_Rpb1_4PF05000.172.9e-2011
ENSCSAVP00000012206RNA_pol_Rpb1_2PF00623.202.4e-6211
ENSCSAVP00000012214RNA_pol_Rpb1_2PF00623.208.5e-6211
ENSCSAVP00000012208RNA_pol_Rpb1_2PF00623.201.4e-6111
ENSCSAVP00000012211RNA_pol_Rpb1_2PF00623.201.4e-6111
ENSCSAVP00000012210RNA_pol_Rpb1_2PF00623.201.5e-6111
ENSCSAVP00000012212RNA_pol_Rpb1_2PF00623.201.5e-6111
ENSCSAVP00000012213RNA_pol_Rpb1_2PF00623.201.5e-6111
ENSCSAVP00000012207RNA_pol_Rpb1_2PF00623.201.5e-6111
ENSCSAVP00000012209RNA_pol_Rpb1_2PF00623.201.7e-6111
ENSCSAVP00000012205RNA_pol_Rpb1_2PF00623.202.1e-6111
ENSCSAVP00000012214RNA_pol_Rpb1_3PF04983.186.3e-3211
ENSCSAVP00000012205RNA_pol_Rpb1_3PF04983.186.9e-3211
ENSCSAVP00000012206RNA_pol_Rpb1_3PF04983.187e-3211
ENSCSAVP00000012207RNA_pol_Rpb1_3PF04983.187.4e-3211
ENSCSAVP00000012208RNA_pol_Rpb1_3PF04983.187.4e-3211
ENSCSAVP00000012211RNA_pol_Rpb1_3PF04983.181.4e-3111
ENSCSAVP00000012213RNA_pol_Rpb1_3PF04983.181.5e-3111
ENSCSAVP00000012209RNA_pol_Rpb1_3PF04983.181.5e-3111
ENSCSAVP00000012212RNA_pol_Rpb1_3PF04983.181.5e-3111
ENSCSAVP00000012210RNA_pol_Rpb1_3PF04983.181.6e-3111
ENSCSAVP00000012208RNA_pol_Rpb1_1PF04997.122.5e-3811
ENSCSAVP00000012207RNA_pol_Rpb1_1PF04997.123.9e-3811
ENSCSAVP00000012213RNA_pol_Rpb1_1PF04997.129.1e-3711
ENSCSAVP00000012211RNA_pol_Rpb1_1PF04997.122.2e-3611
ENSCSAVP00000012212RNA_pol_Rpb1_1PF04997.123e-3411
ENSCSAVP00000012214RNA_pol_Rpb1_1PF04997.127.7e-3411
ENSCSAVP00000012210RNA_pol_Rpb1_1PF04997.121.1e-3311
ENSCSAVP00000012205RNA_pol_Rpb1_1PF04997.123.1e-3311
ENSCSAVP00000012209RNA_pol_Rpb1_1PF04997.126.1e-3311
ENSCSAVP00000012206RNA_pol_Rpb1_1PF04997.129.8e-3311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSAVT00000012356-5046-ENSCSAVP000000122141682 (aa)-H2Z3Q2
ENSCSAVT00000012355-4938-ENSCSAVP000000122131646 (aa)-H2Z3Q1
ENSCSAVT00000012347-5193-ENSCSAVP000000122051731 (aa)-H2Z3P3
ENSCSAVT00000012353-4929-ENSCSAVP000000122111643 (aa)-H2Z3P9
ENSCSAVT00000012352-4973-ENSCSAVP000000122101625 (aa)-H2Z3P8
ENSCSAVT00000012351-4893-ENSCSAVP000000122091631 (aa)-H2Z3P7
ENSCSAVT00000012350-4977-ENSCSAVP000000122081659 (aa)-H2Z3P6
ENSCSAVT00000012354-4896-ENSCSAVP000000122121632 (aa)-H2Z3Q0
ENSCSAVT00000012348-4980-ENSCSAVP000000122061660 (aa)-H2Z3P4
ENSCSAVT00000012349-5196-ENSCSAVP000000122071732 (aa)-H2Z3P5
Gene Model
Click here to download ENSCSAVG00000007184's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000007184's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCSAVG00000007184-6445.370ENSCSAVG00000009925-7250.000
ENSCSAVG00000007184-7656.338ENSCSAVG00000008334-6951.163
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSAVG00000007184-9947.898ENSG00000068654POLR1A9948.221Homo_sapiens
ENSCSAVG00000007184-7049.748ENSAPOG00000017945polr1a9950.279Acanthochromis_polyacanthus
ENSCSAVG00000007184-9155.087ENSAMEG00000005807POLR1A10049.147Ailuropoda_melanoleuca
ENSCSAVG00000007184-9549.719ENSACIG00000022147polr1a9950.922Amphilophus_citrinellus
ENSCSAVG00000007184-9947.393ENSAOCG00000017336polr1a8961.047Amphiprion_ocellaris
ENSCSAVG00000007184-9947.393ENSAPEG00000016105polr1a9455.432Amphiprion_percula
ENSCSAVG00000007184-9947.635ENSATEG00000016773polr1a9947.657Anabas_testudineus
ENSCSAVG00000007184-8354.342ENSAPLG00000013871POLR1A9554.875Anas_platyrhynchos
ENSCSAVG00000007184-9154.172ENSACAG00000012141POLR1A9945.907Anolis_carolinensis
ENSCSAVG00000007184-9155.100ENSANAG00000033927POLR1A9946.382Aotus_nancymaae
ENSCSAVG00000007184-9946.054ENSACLG00000020541polr1a9946.208Astatotilapia_calliptera
ENSCSAVG00000007184-9155.707ENSBTAG00000006481POLR1A9155.707Bos_taurus
ENSCSAVG00000007184-9939.342WBGene00012999rpoa-17861.290Caenorhabditis_elegans
ENSCSAVG00000007184-9154.851ENSCJAG00000019547POLR1A9946.542Callithrix_jacchus
ENSCSAVG00000007184-9750.000ENSCAFG00000007613POLR1A9355.087Canis_familiaris
ENSCSAVG00000007184-9255.486ENSCAFG00020014752POLR1A9255.945Canis_lupus_dingo
ENSCSAVG00000007184-9155.955ENSCHIG00000018204POLR1A9947.232Capra_hircus
ENSCSAVG00000007184-9948.195ENSTSYG00000002761POLR1A9946.098Carlito_syrichta
ENSCSAVG00000007184-9549.083ENSCAPG00000010132POLR1A9054.511Cavia_aperea
ENSCSAVG00000007184-9948.375ENSCPOG00000012350POLR1A9946.682Cavia_porcellus
ENSCSAVG00000007184-9154.783ENSCCAG00000019839POLR1A9946.754Cebus_capucinus
ENSCSAVG00000007184-9947.012ENSCATG00000029786POLR1A9947.066Cercocebus_atys
ENSCSAVG00000007184-9154.963ENSCLAG00000005187POLR1A9946.655Chinchilla_lanigera
ENSCSAVG00000007184-9154.591ENSCSAG00000016251POLR1A9946.838Chlorocebus_sabaeus
ENSCSAVG00000007184-9946.911ENSCPBG00000001115POLR1A9946.089Chrysemys_picta_bellii
ENSCSAVG00000007184-9944.419ENSCANG00000031785POLR1A9944.761Colobus_angolensis_palliatus
ENSCSAVG00000007184-9750.000ENSCGRG00001006651Polr1a9746.296Cricetulus_griseus_chok1gshd
ENSCSAVG00000007184-6145.523ENSCGRG00000010834Polr1a9258.056Cricetulus_griseus_crigri
ENSCSAVG00000007184-9652.754ENSCSEG00000020190polr1a9652.754Cynoglossus_semilaevis
ENSCSAVG00000007184-9947.167ENSCVAG00000020941polr1a9947.489Cyprinodon_variegatus
ENSCSAVG00000007184-9947.764ENSDARG00000098375polr1a9946.678Danio_rerio
ENSCSAVG00000007184-9153.970ENSDNOG00000010829POLR1A9944.986Dasypus_novemcinctus
ENSCSAVG00000007184-9649.541ENSDORG00000008298Polr1a9946.583Dipodomys_ordii
ENSCSAVG00000007184-9941.806FBgn0019938RpI19941.801Drosophila_melanogaster
ENSCSAVG00000007184-7144.687ENSETEG00000000412-6450.177Echinops_telfairi
ENSCSAVG00000007184-7952.893ENSEBUG00000005667-9651.587Eptatretus_burgeri
ENSCSAVG00000007184-9155.211ENSEASG00005001625POLR1A9946.561Equus_asinus_asinus
ENSCSAVG00000007184-9960.938ENSECAG00000030510-9949.926Equus_caballus
ENSCSAVG00000007184-9155.211ENSECAG00000010092POLR1A9949.926Equus_caballus
ENSCSAVG00000007184-9155.211ENSECAG00000036306-9949.926Equus_caballus
ENSCSAVG00000007184-7864.000ENSEEUG00000000676POLR1A7764.000Erinaceus_europaeus
ENSCSAVG00000007184-9947.576ENSELUG00000012769polr1a9846.866Esox_lucius
ENSCSAVG00000007184-9155.211ENSFCAG00000008966POLR1A9946.942Felis_catus
ENSCSAVG00000007184-9949.541ENSFALG00000010082POLR1A9947.069Ficedula_albicollis
ENSCSAVG00000007184-9154.839ENSFDAG00000013726POLR1A9946.285Fukomys_damarensis
ENSCSAVG00000007184-9946.244ENSFHEG00000005996polr1a9946.541Fundulus_heteroclitus
ENSCSAVG00000007184-9945.874ENSGMOG00000002230polr1a9850.392Gadus_morhua
ENSCSAVG00000007184-8948.273ENSGALG00000038160-9848.000Gallus_gallus
ENSCSAVG00000007184-9947.396ENSGAFG00000015266polr1a9255.375Gambusia_affinis
ENSCSAVG00000007184-9948.746ENSGACG00000018791polr1a9947.937Gasterosteus_aculeatus
ENSCSAVG00000007184-9046.431ENSGAGG00000004984-9946.930Gopherus_agassizii
ENSCSAVG00000007184-9155.211ENSGGOG00000001788POLR1A9947.066Gorilla_gorilla
ENSCSAVG00000007184-9449.021ENSHBUG00000020021polr1a9355.917Haplochromis_burtoni
ENSCSAVG00000007184-9155.583ENSHGLG00000006334POLR1A9947.136Heterocephalus_glaber_female
ENSCSAVG00000007184-9155.240ENSHGLG00100006614POLR1A9947.002Heterocephalus_glaber_male
ENSCSAVG00000007184-9150.103ENSHCOG00000003345polr1a9451.169Hippocampus_comes
ENSCSAVG00000007184-9946.145ENSIPUG00000013174polr1a9946.232Ictalurus_punctatus
ENSCSAVG00000007184-9750.000ENSSTOG00000012580POLR1A9354.839Ictidomys_tridecemlineatus
ENSCSAVG00000007184-9154.950ENSJJAG00000013113Polr1a9946.300Jaculus_jaculus
ENSCSAVG00000007184-9948.639ENSKMAG00000007399polr1a9947.649Kryptolebias_marmoratus
ENSCSAVG00000007184-8956.345ENSLBEG00000015401polr1a9456.345Labrus_bergylta
ENSCSAVG00000007184-5446.838ENSLACG00000003218polr1a9946.882Latimeria_chalumnae
ENSCSAVG00000007184-9950.877ENSLOCG00000010881polr1a9948.954Lepisosteus_oculatus
ENSCSAVG00000007184-9154.534ENSLAFG00000014948POLR1A9946.493Loxodonta_africana
ENSCSAVG00000007184-9946.784ENSMFAG00000046097POLR1A9947.045Macaca_fascicularis
ENSCSAVG00000007184-9946.784ENSMMUG00000015815POLR1A9947.045Macaca_mulatta
ENSCSAVG00000007184-9946.784ENSMNEG00000043313POLR1A9947.045Macaca_nemestrina
ENSCSAVG00000007184-9154.591ENSMLEG00000042428POLR1A9946.781Mandrillus_leucophaeus
ENSCSAVG00000007184-9356.164ENSMAMG00000016565polr1a9256.164Mastacembelus_armatus
ENSCSAVG00000007184-9947.045ENSMZEG00005004915polr1a9947.300Maylandia_zebra
ENSCSAVG00000007184-10044.151ENSMGAG00000013111POLR1A9945.315Meleagris_gallopavo
ENSCSAVG00000007184-9047.022ENSMAUG00000008497Polr1a9847.442Mesocricetus_auratus
ENSCSAVG00000007184-9155.019ENSMICG00000000757POLR1A9155.019Microcebus_murinus
ENSCSAVG00000007184-9363.200ENSMOCG00000000122Polr1a9946.761Microtus_ochrogaster
ENSCSAVG00000007184-9947.124ENSMMOG00000010216polr1a9947.329Mola_mola
ENSCSAVG00000007184-9363.200ENSMODG00000009335POLR1A9154.110Monodelphis_domestica
ENSCSAVG00000007184-9357.161ENSMALG00000013363polr1a9657.161Monopterus_albus
ENSCSAVG00000007184-9750.459MGP_CAROLIEiJ_G0028494Polr1a9076.923Mus_caroli
ENSCSAVG00000007184-9949.539ENSMUSG00000049553Polr1a8975.641Mus_musculus
ENSCSAVG00000007184-9947.795MGP_PahariEiJ_G0022230Polr1a8975.641Mus_pahari
ENSCSAVG00000007184-9749.541MGP_SPRETEiJ_G0029499Polr1a9076.923Mus_spretus
ENSCSAVG00000007184-9155.364ENSMPUG00000009135POLR1A9947.455Mustela_putorius_furo
ENSCSAVG00000007184-9155.335ENSMLUG00000015723POLR1A9947.052Myotis_lucifugus
ENSCSAVG00000007184-9750.661ENSNGAG00000017907Polr1a9946.416Nannospalax_galili
ENSCSAVG00000007184-9946.911ENSNBRG00000000519polr1a9947.279Neolamprologus_brichardi
ENSCSAVG00000007184-9154.715ENSNLEG00000002264POLR1A9945.944Nomascus_leucogenys
ENSCSAVG00000007184-6962.400ENSMEUG00000011665-6862.400Notamacropus_eugenii
ENSCSAVG00000007184-9448.837ENSOPRG00000008269POLR1A9548.837Ochotona_princeps
ENSCSAVG00000007184-9154.591ENSODEG00000003542POLR1A9946.123Octodon_degus
ENSCSAVG00000007184-9946.784ENSONIG00000015895polr1a9947.381Oreochromis_niloticus
ENSCSAVG00000007184-9155.211ENSOCUG00000010138POLR1A9946.975Oryctolagus_cuniculus
ENSCSAVG00000007184-9948.455ENSORLG00000008753polr1a9947.760Oryzias_latipes
ENSCSAVG00000007184-9155.879ENSORLG00020020726polr1a9155.879Oryzias_latipes_hni
ENSCSAVG00000007184-9555.814ENSORLG00015016071polr1a9855.814Oryzias_latipes_hsok
ENSCSAVG00000007184-9948.556ENSOGAG00000004031POLR1A9947.019Otolemur_garnettii
ENSCSAVG00000007184-9155.693ENSOARG00000020601POLR1A9155.693Ovis_aries
ENSCSAVG00000007184-9154.963ENSPPAG00000042450POLR1A9947.123Pan_paniscus
ENSCSAVG00000007184-9155.211ENSPPRG00000006702POLR1A9946.829Panthera_pardus
ENSCSAVG00000007184-9946.485ENSPTIG00000018783POLR1A9946.501Panthera_tigris_altaica
ENSCSAVG00000007184-9154.963ENSPTRG00000012147POLR1A9947.066Pan_troglodytes
ENSCSAVG00000007184-9946.955ENSPANG00000025908POLR1A9947.009Papio_anubis
ENSCSAVG00000007184-9950.462ENSPKIG00000005468polr1a9852.593Paramormyrops_kingsleyae
ENSCSAVG00000007184-5955.238ENSPSIG00000009321-9455.238Pelodiscus_sinensis
ENSCSAVG00000007184-5551.222ENSPMGG00000009718polr1a9551.225Periophthalmus_magnuspinnatus
ENSCSAVG00000007184-9749.541ENSPEMG00000022224Polr1a9946.614Peromyscus_maniculatus_bairdii
ENSCSAVG00000007184-9545.487ENSPCIG00000004222POLR1A9945.622Phascolarctos_cinereus
ENSCSAVG00000007184-9947.690ENSPFOG00000005025polr1a9947.690Poecilia_formosa
ENSCSAVG00000007184-9751.282ENSPLAG00000021389polr1a9947.573Poecilia_latipinna
ENSCSAVG00000007184-9751.795ENSPMEG00000006463polr1a9946.735Poecilia_mexicana
ENSCSAVG00000007184-9753.226ENSPREG00000002389polr1a9355.417Poecilia_reticulata
ENSCSAVG00000007184-9946.781ENSPPYG00000012217POLR1A9947.096Pongo_abelii
ENSCSAVG00000007184-7063.158ENSPCAG00000011582POLR1A7063.158Procavia_capensis
ENSCSAVG00000007184-9155.143ENSPCOG00000026987POLR1A9946.841Propithecus_coquereli
ENSCSAVG00000007184-9546.701ENSPVAG00000012674POLR1A9447.942Pteropus_vampyrus
ENSCSAVG00000007184-9056.040ENSPNYG00000000026polr1a9947.243Pundamilia_nyererei
ENSCSAVG00000007184-9946.297ENSPNAG00000019223polr1a9454.949Pygocentrus_nattereri
ENSCSAVG00000007184-9946.477ENSRNOG00000009545Polr1a9946.758Rattus_norvegicus
ENSCSAVG00000007184-9254.715ENSRBIG00000028335POLR1A9946.667Rhinopithecus_bieti
ENSCSAVG00000007184-9849.167ENSRROG00000031473POLR1A9946.667Rhinopithecus_roxellana
ENSCSAVG00000007184-9938.539YOR341WRPA1909939.161Saccharomyces_cerevisiae
ENSCSAVG00000007184-9154.658ENSSBOG00000030262POLR1A9946.595Saimiri_boliviensis_boliviensis
ENSCSAVG00000007184-9942.149ENSSHAG00000014739POLR1A9942.061Sarcophilus_harrisii
ENSCSAVG00000007184-9755.769ENSSFOG00015019716polr1a9454.353Scleropages_formosus
ENSCSAVG00000007184-9948.252ENSSMAG00000014342polr1a9357.662Scophthalmus_maximus
ENSCSAVG00000007184-9751.795ENSSDUG00000014631polr1a9947.918Seriola_dumerili
ENSCSAVG00000007184-9947.097ENSSLDG00000024095polr1a9157.723Seriola_lalandi_dorsalis
ENSCSAVG00000007184-6882.927ENSSARG00000003136-7182.927Sorex_araneus
ENSCSAVG00000007184-9355.177ENSSPUG00000004215POLR1A9852.020Sphenodon_punctatus
ENSCSAVG00000007184-7049.488ENSSPAG00000016341polr1a9749.572Stegastes_partitus
ENSCSAVG00000007184-8548.131ENSSSCG00000008226POLR1A9947.850Sus_scrofa
ENSCSAVG00000007184-9945.992ENSTGUG00000010704POLR1A9946.016Taeniopygia_guttata
ENSCSAVG00000007184-9946.466ENSTRUG00000002210polr1a9946.804Takifugu_rubripes
ENSCSAVG00000007184-9465.600ENSTNIG00000010116polr1a9165.600Tetraodon_nigroviridis
ENSCSAVG00000007184-6972.455ENSTBEG00000008646POLR1A6072.455Tupaia_belangeri
ENSCSAVG00000007184-9944.734ENSTTRG00000008597POLR1A9944.957Tursiops_truncatus
ENSCSAVG00000007184-6560.234ENSUAMG00000012158-8960.234Ursus_americanus
ENSCSAVG00000007184-9946.281ENSUMAG00000006700POLR1A8957.182Ursus_maritimus
ENSCSAVG00000007184-9750.000ENSVVUG00000001245POLR1A9154.963Vulpes_vulpes
ENSCSAVG00000007184-9251.526ENSXETG00000001952polr1a9944.945Xenopus_tropicalis
ENSCSAVG00000007184-9947.517ENSXMAG00000004032polr1a9947.510Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us