EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000007498 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 694 bases
Position: chrreftig_27:145339-146032
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000012767	LSM	PF01423.22	3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000012916	-	694	-	ENSCSAVP00000012767	88 (aa)	-	H2Z5A5

Gene Model

Click here to download ENSCSAVG00000007498's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000007498's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000007498	-	75	48.485	ENSCSAVG00000002065	-	80	48.485

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000007498	-	84	89.189	ENSG00000139343	SNRPF	99	87.059	Homo_sapiens
ENSCSAVG00000007498	-	88	85.714	ENSAPOG00000003377	snrpf	69	84.091	Acanthochromis_polyacanthus
ENSCSAVG00000007498	-	84	89.189	ENSAMEG00000002166	-	100	87.059	Ailuropoda_melanoleuca
ENSCSAVG00000007498	-	85	78.667	ENSAMEG00000018718	-	99	77.647	Ailuropoda_melanoleuca
ENSCSAVG00000007498	-	83	90.411	ENSACIG00000013216	snrpf	99	88.095	Amphilophus_citrinellus
ENSCSAVG00000007498	-	83	90.411	ENSAOCG00000015108	snrpf	99	88.095	Amphiprion_ocellaris
ENSCSAVG00000007498	-	83	90.411	ENSAPEG00000022022	snrpf	99	88.095	Amphiprion_percula
ENSCSAVG00000007498	-	83	90.411	ENSATEG00000022625	snrpf	90	88.095	Anabas_testudineus
ENSCSAVG00000007498	-	86	86.842	ENSACAG00000014073	SNRPF	100	85.057	Anolis_carolinensis
ENSCSAVG00000007498	-	84	62.162	ENSANAG00000025860	-	99	62.353	Aotus_nancymaae
ENSCSAVG00000007498	-	81	83.099	ENSANAG00000020297	-	75	81.707	Aotus_nancymaae
ENSCSAVG00000007498	-	84	89.189	ENSANAG00000032845	SNRPF	99	87.059	Aotus_nancymaae
ENSCSAVG00000007498	-	83	90.411	ENSACLG00000016066	snrpf	99	88.095	Astatotilapia_calliptera
ENSCSAVG00000007498	-	84	86.486	ENSAMXG00000007421	snrpf	99	84.706	Astyanax_mexicanus
ENSCSAVG00000007498	-	84	89.189	ENSBTAG00000016271	SNRPF	99	87.059	Bos_taurus
ENSCSAVG00000007498	-	88	81.818	ENSBTAG00000050012	-	95	81.818	Bos_taurus
ENSCSAVG00000007498	-	89	67.949	WBGene00004918	snr-5	89	67.949	Caenorhabditis_elegans
ENSCSAVG00000007498	-	84	89.189	ENSCJAG00000002705	-	99	87.059	Callithrix_jacchus
ENSCSAVG00000007498	-	88	85.714	ENSCAFG00000006395	-	79	84.091	Canis_familiaris
ENSCSAVG00000007498	-	82	84.722	ENSCAFG00000031151	-	99	83.529	Canis_familiaris
ENSCSAVG00000007498	-	82	84.722	ENSCAFG00020010823	-	99	83.529	Canis_lupus_dingo
ENSCSAVG00000007498	-	89	82.051	ENSCAFG00020013161	-	83	82.051	Canis_lupus_dingo
ENSCSAVG00000007498	-	84	77.027	ENSTSYG00000030635	-	99	76.471	Carlito_syrichta
ENSCSAVG00000007498	-	84	85.333	ENSTSYG00000036502	-	99	83.721	Carlito_syrichta
ENSCSAVG00000007498	-	94	80.723	ENSTSYG00000031636	-	70	80.723	Carlito_syrichta
ENSCSAVG00000007498	-	84	89.189	ENSCAPG00000007242	SNRPF	100	87.059	Cavia_aperea
ENSCSAVG00000007498	-	84	89.189	ENSCPOG00000013898	SNRPF	99	87.059	Cavia_porcellus
ENSCSAVG00000007498	-	95	78.571	ENSCCAG00000033627	-	66	78.571	Cebus_capucinus
ENSCSAVG00000007498	-	84	89.189	ENSCCAG00000037378	-	99	87.059	Cebus_capucinus
ENSCSAVG00000007498	-	97	87.059	ENSCCAG00000017356	-	99	87.059	Cebus_capucinus
ENSCSAVG00000007498	-	86	89.474	ENSCLAG00000007200	SNRPF	100	87.356	Chinchilla_lanigera
ENSCSAVG00000007498	-	88	85.714	ENSCSAG00000003602	-	72	84.091	Chlorocebus_sabaeus
ENSCSAVG00000007498	-	72	90.476	ENSCHOG00000009392	SNRPF	98	90.476	Choloepus_hoffmanni
ENSCSAVG00000007498	-	98	83.721	ENSCPBG00000024287	-	68	83.721	Chrysemys_picta_bellii
ENSCSAVG00000007498	-	84	83.784	ENSCPBG00000006227	-	99	81.176	Chrysemys_picta_bellii
ENSCSAVG00000007498	-	97	76.471	ENSCPBG00000026463	-	99	76.471	Chrysemys_picta_bellii
ENSCSAVG00000007498	-	97	78.824	ENSCPBG00000001985	-	99	78.824	Chrysemys_picta_bellii
ENSCSAVG00000007498	-	83	83.562	ENSCGRG00001008965	-	65	82.143	Cricetulus_griseus_chok1gshd
ENSCSAVG00000007498	-	84	89.189	ENSCGRG00001017100	-	99	87.059	Cricetulus_griseus_chok1gshd
ENSCSAVG00000007498	-	84	89.189	ENSCGRG00000000336	-	99	87.059	Cricetulus_griseus_crigri
ENSCSAVG00000007498	-	89	82.051	ENSCGRG00000018878	-	97	82.051	Cricetulus_griseus_crigri
ENSCSAVG00000007498	-	84	87.838	ENSCSEG00000004748	snrpf	99	85.882	Cynoglossus_semilaevis
ENSCSAVG00000007498	-	88	85.714	ENSCVAG00000000397	snrpf	70	84.091	Cyprinodon_variegatus
ENSCSAVG00000007498	-	84	86.842	ENSDARG00000105037	snrpf	99	85.057	Danio_rerio
ENSCSAVG00000007498	-	82	75.000	ENSDNOG00000049373	-	77	68.182	Dasypus_novemcinctus
ENSCSAVG00000007498	-	88	85.714	ENSDNOG00000048989	-	79	84.091	Dasypus_novemcinctus
ENSCSAVG00000007498	-	84	89.189	ENSDNOG00000043775	-	54	87.059	Dasypus_novemcinctus
ENSCSAVG00000007498	-	81	80.282	ENSDORG00000025351	-	99	80.282	Dipodomys_ordii
ENSCSAVG00000007498	-	67	88.136	ENSDORG00000029740	-	85	85.714	Dipodomys_ordii
ENSCSAVG00000007498	-	98	77.907	FBgn0000426	SmF	98	77.907	Drosophila_melanogaster
ENSCSAVG00000007498	-	84	89.189	ENSETEG00000001558	-	99	87.059	Echinops_telfairi
ENSCSAVG00000007498	-	86	79.221	ENSEBUG00000001793	-	83	79.221	Eptatretus_burgeri
ENSCSAVG00000007498	-	88	85.714	ENSECAG00000019817	SNRPF	72	84.091	Equus_caballus
ENSCSAVG00000007498	-	84	89.189	ENSEEUG00000013509	SNRPF	100	87.059	Erinaceus_europaeus
ENSCSAVG00000007498	-	98	82.558	ENSELUG00000007737	RUXF	98	83.529	Esox_lucius
ENSCSAVG00000007498	-	84	86.486	ENSELUG00000003121	RUXF	99	84.706	Esox_lucius
ENSCSAVG00000007498	-	94	66.265	ENSFCAG00000031148	-	76	66.265	Felis_catus
ENSCSAVG00000007498	-	84	66.216	ENSFCAG00000021942	-	99	67.059	Felis_catus
ENSCSAVG00000007498	-	84	89.189	ENSFCAG00000029966	-	99	87.059	Felis_catus
ENSCSAVG00000007498	-	85	88.000	ENSFALG00000010799	SNRPF	100	86.047	Ficedula_albicollis
ENSCSAVG00000007498	-	84	89.189	ENSFDAG00000002831	-	99	87.059	Fukomys_damarensis
ENSCSAVG00000007498	-	88	85.714	ENSFHEG00000003240	snrpf	77	84.091	Fundulus_heteroclitus
ENSCSAVG00000007498	-	84	89.189	ENSGMOG00000007741	snrpf	100	87.059	Gadus_morhua
ENSCSAVG00000007498	-	84	89.189	ENSGALG00000011409	SNRPF	99	87.059	Gallus_gallus
ENSCSAVG00000007498	-	86	88.158	ENSGAFG00000016187	snrpf	100	86.207	Gambusia_affinis
ENSCSAVG00000007498	-	84	87.838	ENSGACG00000020055	snrpf	100	85.882	Gasterosteus_aculeatus
ENSCSAVG00000007498	-	73	84.375	ENSGAGG00000020974	-	54	84.375	Gopherus_agassizii
ENSCSAVG00000007498	-	84	89.189	ENSGAGG00000012945	-	79	82.955	Gopherus_agassizii
ENSCSAVG00000007498	-	61	87.037	ENSGAGG00000011163	-	95	87.037	Gopherus_agassizii
ENSCSAVG00000007498	-	77	77.941	ENSGAGG00000014132	-	82	77.941	Gopherus_agassizii
ENSCSAVG00000007498	-	83	86.301	ENSGAGG00000022991	-	86	86.301	Gopherus_agassizii
ENSCSAVG00000007498	-	94	68.675	ENSGGOG00000039936	-	94	68.675	Gorilla_gorilla
ENSCSAVG00000007498	-	88	67.532	ENSGGOG00000039564	-	93	67.532	Gorilla_gorilla
ENSCSAVG00000007498	-	83	90.411	ENSGGOG00000001127	-	99	88.095	Gorilla_gorilla
ENSCSAVG00000007498	-	84	89.189	ENSHGLG00000009108	SNRPF	99	87.059	Heterocephalus_glaber_female
ENSCSAVG00000007498	-	84	87.838	ENSHGLG00000021172	-	99	85.882	Heterocephalus_glaber_female
ENSCSAVG00000007498	-	84	89.189	ENSHGLG00100008103	-	100	87.059	Heterocephalus_glaber_male
ENSCSAVG00000007498	-	84	87.838	ENSHGLG00100019596	-	99	85.882	Heterocephalus_glaber_male
ENSCSAVG00000007498	-	72	81.429	ENSHCOG00000018663	snrpf	55	81.429	Hippocampus_comes
ENSCSAVG00000007498	-	83	90.411	ENSIPUG00000018994	snrpf	99	88.095	Ictalurus_punctatus
ENSCSAVG00000007498	-	84	89.189	ENSSTOG00000010434	-	99	87.059	Ictidomys_tridecemlineatus
ENSCSAVG00000007498	-	97	76.471	ENSJJAG00000010502	-	99	76.471	Jaculus_jaculus
ENSCSAVG00000007498	-	86	88.158	ENSJJAG00000011272	-	100	86.207	Jaculus_jaculus
ENSCSAVG00000007498	-	97	74.118	ENSJJAG00000004558	-	99	74.118	Jaculus_jaculus
ENSCSAVG00000007498	-	76	85.075	ENSJJAG00000004828	-	100	85.075	Jaculus_jaculus
ENSCSAVG00000007498	-	83	90.411	ENSKMAG00000013566	snrpf	98	88.095	Kryptolebias_marmoratus
ENSCSAVG00000007498	-	84	90.541	ENSLBEG00000008800	snrpf	99	88.235	Labrus_bergylta
ENSCSAVG00000007498	-	88	87.013	ENSLACG00000002456	-	75	85.227	Latimeria_chalumnae
ENSCSAVG00000007498	-	84	86.486	ENSLOCG00000015744	snrpf	99	84.706	Lepisosteus_oculatus
ENSCSAVG00000007498	-	85	88.000	ENSLAFG00000017426	SNRPF	100	86.047	Loxodonta_africana
ENSCSAVG00000007498	-	83	91.781	ENSMAMG00000016593	snrpf	99	89.286	Mastacembelus_armatus
ENSCSAVG00000007498	-	83	90.411	ENSMZEG00005014701	snrpf	99	88.095	Maylandia_zebra
ENSCSAVG00000007498	-	83	90.411	ENSMGAG00000011453	-	76	88.095	Meleagris_gallopavo
ENSCSAVG00000007498	-	72	90.476	ENSMAUG00000016909	-	100	87.838	Mesocricetus_auratus
ENSCSAVG00000007498	-	84	85.135	ENSMAUG00000008799	-	99	83.529	Mesocricetus_auratus
ENSCSAVG00000007498	-	63	89.091	ENSMAUG00000010289	-	72	89.091	Mesocricetus_auratus
ENSCSAVG00000007498	-	72	90.476	ENSMAUG00000019737	-	100	87.838	Mesocricetus_auratus
ENSCSAVG00000007498	-	84	89.189	ENSMICG00000012153	-	99	87.059	Microcebus_murinus
ENSCSAVG00000007498	-	88	80.519	ENSMICG00000030494	-	70	79.545	Microcebus_murinus
ENSCSAVG00000007498	-	77	76.471	ENSMOCG00000020220	-	100	75.949	Microtus_ochrogaster
ENSCSAVG00000007498	-	83	78.082	ENSMOCG00000022166	-	89	76.829	Microtus_ochrogaster
ENSCSAVG00000007498	-	84	89.189	ENSMOCG00000020437	Snrpf	99	87.059	Microtus_ochrogaster
ENSCSAVG00000007498	-	84	87.838	ENSMMOG00000007127	snrpf	100	85.882	Mola_mola
ENSCSAVG00000007498	-	88	85.714	ENSMODG00000008091	SNRPF	77	84.091	Monodelphis_domestica
ENSCSAVG00000007498	-	83	90.411	ENSMALG00000012328	snrpf	99	88.095	Monopterus_albus
ENSCSAVG00000007498	-	84	89.189	MGP_CAROLIEiJ_G0015735	-	99	87.059	Mus_caroli
ENSCSAVG00000007498	-	84	89.189	ENSMUSG00000020018	Snrpf	99	87.059	Mus_musculus
ENSCSAVG00000007498	-	84	89.189	MGP_PahariEiJ_G0031350	Snrpf	99	87.059	Mus_pahari
ENSCSAVG00000007498	-	84	89.189	MGP_SPRETEiJ_G0016553	Snrpf	99	87.059	Mus_spretus
ENSCSAVG00000007498	-	84	89.189	ENSMPUG00000007176	-	76	87.059	Mustela_putorius_furo
ENSCSAVG00000007498	-	88	85.714	ENSMLUG00000026149	-	83	84.091	Myotis_lucifugus
ENSCSAVG00000007498	-	97	72.941	ENSMLUG00000026269	-	80	72.941	Myotis_lucifugus
ENSCSAVG00000007498	-	88	85.714	ENSMLUG00000029201	-	83	84.091	Myotis_lucifugus
ENSCSAVG00000007498	-	88	85.714	ENSMLUG00000027932	-	83	84.091	Myotis_lucifugus
ENSCSAVG00000007498	-	84	89.189	ENSMLUG00000013577	-	100	87.059	Myotis_lucifugus
ENSCSAVG00000007498	-	77	79.412	ENSNGAG00000005851	-	80	79.412	Nannospalax_galili
ENSCSAVG00000007498	-	84	89.189	ENSNGAG00000024292	-	99	87.059	Nannospalax_galili
ENSCSAVG00000007498	-	88	85.714	ENSNBRG00000011682	snrpf	90	84.091	Neolamprologus_brichardi
ENSCSAVG00000007498	-	84	63.514	ENSMEUG00000000671	SNRPF	100	64.706	Notamacropus_eugenii
ENSCSAVG00000007498	-	83	90.411	ENSODEG00000010328	-	99	88.095	Octodon_degus
ENSCSAVG00000007498	-	84	89.189	ENSOCUG00000010925	SNRPF	75	87.059	Oryctolagus_cuniculus
ENSCSAVG00000007498	-	84	86.486	ENSORLG00020008216	snrpf	100	84.706	Oryzias_latipes_hni
ENSCSAVG00000007498	-	84	86.486	ENSORLG00015007418	snrpf	100	84.706	Oryzias_latipes_hsok
ENSCSAVG00000007498	-	83	89.041	ENSOMEG00000003018	snrpf	99	86.905	Oryzias_melastigma
ENSCSAVG00000007498	-	84	87.838	ENSOGAG00000030323	-	99	87.059	Otolemur_garnettii
ENSCSAVG00000007498	-	88	85.714	ENSOARG00000011853	-	77	84.091	Ovis_aries
ENSCSAVG00000007498	-	88	67.532	ENSPPAG00000037479	-	93	67.532	Pan_paniscus
ENSCSAVG00000007498	-	94	68.675	ENSPPAG00000037544	-	94	68.675	Pan_paniscus
ENSCSAVG00000007498	-	94	65.060	ENSPPRG00000007449	-	85	65.060	Panthera_pardus
ENSCSAVG00000007498	-	84	89.189	ENSPPRG00000005875	-	99	87.059	Panthera_pardus
ENSCSAVG00000007498	-	94	67.470	ENSPTIG00000005117	-	99	67.470	Panthera_tigris_altaica
ENSCSAVG00000007498	-	84	89.189	ENSPTIG00000007520	SNRPF	99	87.059	Panthera_tigris_altaica
ENSCSAVG00000007498	-	88	67.532	ENSPTRG00000047717	-	93	67.532	Pan_troglodytes
ENSCSAVG00000007498	-	94	68.675	ENSPTRG00000043814	-	94	68.675	Pan_troglodytes
ENSCSAVG00000007498	-	88	85.714	ENSPKIG00000014784	snrpf	97	84.091	Paramormyrops_kingsleyae
ENSCSAVG00000007498	-	85	88.000	ENSPSIG00000016462	SNRPF	100	86.047	Pelodiscus_sinensis
ENSCSAVG00000007498	-	84	87.838	ENSPMGG00000023548	snrpf	100	85.882	Periophthalmus_magnuspinnatus
ENSCSAVG00000007498	-	86	88.158	ENSPEMG00000023326	Snrpf	100	86.207	Peromyscus_maniculatus_bairdii
ENSCSAVG00000007498	-	83	90.411	ENSPLAG00000023932	snrpf	99	88.095	Poecilia_latipinna
ENSCSAVG00000007498	-	83	90.411	ENSPMEG00000003377	snrpf	99	88.095	Poecilia_mexicana
ENSCSAVG00000007498	-	86	89.474	ENSPREG00000022635	snrpf	100	87.356	Poecilia_reticulata
ENSCSAVG00000007498	-	84	89.189	ENSPPYG00000004847	-	99	87.059	Pongo_abelii
ENSCSAVG00000007498	-	84	89.189	ENSPCOG00000023833	-	99	87.059	Propithecus_coquereli
ENSCSAVG00000007498	-	84	89.189	ENSPVAG00000009036	SNRPF	99	87.059	Pteropus_vampyrus
ENSCSAVG00000007498	-	83	90.411	ENSPNYG00000021712	snrpf	99	88.095	Pundamilia_nyererei
ENSCSAVG00000007498	-	83	89.041	ENSPNAG00000019117	snrpf	99	86.905	Pygocentrus_nattereri
ENSCSAVG00000007498	-	84	89.189	ENSRNOG00000005556	Snrpf	99	87.059	Rattus_norvegicus
ENSCSAVG00000007498	-	84	86.486	ENSRBIG00000030414	-	99	83.529	Rhinopithecus_bieti
ENSCSAVG00000007498	-	84	86.486	ENSRROG00000021975	-	99	83.529	Rhinopithecus_roxellana
ENSCSAVG00000007498	-	85	56.579	YPR182W	SMX3	88	56.579	Saccharomyces_cerevisiae
ENSCSAVG00000007498	-	84	89.189	ENSSBOG00000012868	-	99	88.235	Saimiri_boliviensis_boliviensis
ENSCSAVG00000007498	-	84	89.189	ENSSBOG00000036179	-	99	87.059	Saimiri_boliviensis_boliviensis
ENSCSAVG00000007498	-	84	74.324	ENSSBOG00000032297	-	99	75.294	Saimiri_boliviensis_boliviensis
ENSCSAVG00000007498	-	84	74.026	ENSSBOG00000027638	-	99	73.864	Saimiri_boliviensis_boliviensis
ENSCSAVG00000007498	-	88	85.714	ENSSHAG00000012294	SNRPF	79	84.091	Sarcophilus_harrisii
ENSCSAVG00000007498	-	74	90.769	ENSSFOG00015021523	snrpf	97	90.769	Scleropages_formosus
ENSCSAVG00000007498	-	86	86.842	ENSSMAG00000005533	snrpf	100	85.057	Scophthalmus_maximus
ENSCSAVG00000007498	-	73	90.625	ENSSDUG00000016283	snrpf	76	90.625	Seriola_dumerili
ENSCSAVG00000007498	-	92	73.171	ENSSLDG00000003885	-	100	73.171	Seriola_lalandi_dorsalis
ENSCSAVG00000007498	-	83	90.411	ENSSLDG00000005119	snrpf	98	88.095	Seriola_lalandi_dorsalis
ENSCSAVG00000007498	-	83	90.411	ENSSPUG00000014590	-	99	88.095	Sphenodon_punctatus
ENSCSAVG00000007498	-	88	87.013	ENSSPAG00000003283	snrpf	100	85.227	Stegastes_partitus
ENSCSAVG00000007498	-	84	89.189	ENSSSCG00000000895	SNRPF	99	87.059	Sus_scrofa
ENSCSAVG00000007498	-	66	91.379	ENSTRUG00000014956	snrpf	100	88.406	Takifugu_rubripes
ENSCSAVG00000007498	-	84	90.541	ENSTNIG00000012672	snrpf	99	88.235	Tetraodon_nigroviridis
ENSCSAVG00000007498	-	84	63.514	ENSTTRG00000006070	SNRPF	99	64.706	Tursiops_truncatus
ENSCSAVG00000007498	-	97	75.294	ENSUAMG00000001101	-	99	75.294	Ursus_americanus
ENSCSAVG00000007498	-	84	89.189	ENSUAMG00000008176	-	99	87.059	Ursus_americanus
ENSCSAVG00000007498	-	84	89.189	ENSUMAG00000003528	-	99	87.059	Ursus_maritimus
ENSCSAVG00000007498	-	84	79.730	ENSUMAG00000006177	-	99	76.471	Ursus_maritimus
ENSCSAVG00000007498	-	84	89.189	ENSVPAG00000008712	-	99	87.059	Vicugna_pacos
ENSCSAVG00000007498	-	88	81.818	ENSVVUG00000023821	-	99	81.818	Vulpes_vulpes
ENSCSAVG00000007498	-	84	65.789	ENSXETG00000021630	snrpf	100	66.667	Xenopus_tropicalis
ENSCSAVG00000007498	-	86	89.474	ENSXCOG00000013860	snrpf	100	87.356	Xiphophorus_couchianus
ENSCSAVG00000007498	-	83	90.411	ENSXMAG00000015448	snrpf	99	88.095	Xiphophorus_maculatus