EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000007521 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 9832 bases
Position: chrreftig_13:2171636-2181467
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000012802	DEAD	PF00270.29	4.8e-16	1	1
ENSCSAVP00000012804	DEAD	PF00270.29	4.9e-16	1	1
ENSCSAVP00000012803	DEAD	PF00270.29	5.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000012951	-	1758	-	ENSCSAVP00000012802	576 (aa)	-	H2Z5E0
ENSCSAVT00000012953	-	2154	-	ENSCSAVP00000012804	574 (aa)	-	H2Z5E2
ENSCSAVT00000012952	-	2047	-	ENSCSAVP00000012803	587 (aa)	-	H2Z5E1

Gene Model

Click here to download ENSCSAVG00000007521's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000007521's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000007521	-	98	53.833	ENSCSAVG00000011052	-	98	53.833
ENSCSAVG00000007521	-	69	37.412	ENSCSAVG00000004094	-	96	37.412

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000007521	-	89	37.291	ENSCAFG00020016111	BLM	65	37.385	Canis_lupus_dingo
ENSCSAVG00000007521	-	89	36.996	ENSCATG00000040609	BLM	84	36.182	Cercocebus_atys
ENSCSAVG00000007521	-	88	36.872	ENSCPBG00000025000	BLM	54	36.872	Chrysemys_picta_bellii
ENSCSAVG00000007521	-	96	78.947	ENSCING00000021036	-	100	78.947	Ciona_intestinalis
ENSCSAVG00000007521	-	89	37.798	ENSDORG00000011033	Blm	52	37.798	Dipodomys_ordii
ENSCSAVG00000007521	-	66	41.985	ENSEBUG00000015743	-	70	38.046	Eptatretus_burgeri
ENSCSAVG00000007521	-	73	37.500	ENSGMOG00000010827	-	99	37.500	Gadus_morhua
ENSCSAVG00000007521	-	90	37.655	ENSGMOG00000016431	blm	61	37.430	Gadus_morhua
ENSCSAVG00000007521	-	71	36.782	ENSGMOG00000012988	-	99	36.782	Gadus_morhua
ENSCSAVG00000007521	-	74	35.909	ENSGMOG00000010772	-	98	35.909	Gadus_morhua
ENSCSAVG00000007521	-	70	33.976	ENSGMOG00000013063	-	98	32.850	Gadus_morhua
ENSCSAVG00000007521	-	70	38.702	ENSGMOG00000010761	-	97	38.702	Gadus_morhua
ENSCSAVG00000007521	-	88	37.970	ENSGACG00000010863	blm	99	38.462	Gasterosteus_aculeatus
ENSCSAVG00000007521	-	98	35.678	ENSGAGG00000005383	BLM	60	35.678	Gopherus_agassizii
ENSCSAVG00000007521	-	89	37.363	ENSGGOG00000007710	BLM	74	40.134	Gorilla_gorilla
ENSCSAVG00000007521	-	89	39.292	ENSHCOG00000011455	blm	55	39.360	Hippocampus_comes
ENSCSAVG00000007521	-	88	40.000	ENSLBEG00000018729	blm	63	40.000	Labrus_bergylta
ENSCSAVG00000007521	-	89	36.996	ENSMFAG00000042982	BLM	74	40.134	Macaca_fascicularis
ENSCSAVG00000007521	-	89	36.996	ENSMMUG00000019526	BLM	74	40.134	Macaca_mulatta
ENSCSAVG00000007521	-	89	36.996	ENSMNEG00000031251	BLM	74	40.134	Macaca_nemestrina
ENSCSAVG00000007521	-	57	33.967	ENSMGAG00000010473	BLM	61	33.967	Meleagris_gallopavo
ENSCSAVG00000007521	-	99	34.281	ENSNLEG00000012087	BLM	55	33.946	Nomascus_leucogenys
ENSCSAVG00000007521	-	89	36.106	ENSODEG00000015373	BLM	57	34.122	Octodon_degus
ENSCSAVG00000007521	-	86	37.476	ENSOANG00000009316	-	68	37.476	Ornithorhynchus_anatinus
ENSCSAVG00000007521	-	88	38.983	ENSORLG00015018640	blm	54	39.057	Oryzias_latipes_hsok
ENSCSAVG00000007521	-	89	36.996	ENSPANG00000018572	BLM	84	36.182	Papio_anubis
ENSCSAVG00000007521	-	74	35.022	ENSPSIG00000009792	BLM	80	35.022	Pelodiscus_sinensis
ENSCSAVG00000007521	-	91	37.184	ENSPMGG00000006629	blm	61	37.184	Periophthalmus_magnuspinnatus
ENSCSAVG00000007521	-	75	42.316	ENSPMAG00000000445	blm	70	38.868	Petromyzon_marinus
ENSCSAVG00000007521	-	89	37.179	ENSRBIG00000029656	BLM	74	40.134	Rhinopithecus_bieti
ENSCSAVG00000007521	-	89	37.179	ENSRROG00000037871	BLM	74	40.134	Rhinopithecus_roxellana
ENSCSAVG00000007521	-	92	36.861	ENSUMAG00000009105	BLM	74	36.525	Ursus_maritimus