EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000007580 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 27527 bases
Position: chrreftig_117:662487-690013
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000012905	ResIII	PF04851.15	8.5e-09	1	1
ENSCSAVP00000012904	ResIII	PF04851.15	2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000013055	-	395	-	ENSCSAVP00000012906	60 (aa)	-	H2Z5P4
ENSCSAVT00000013054	-	2953	-	ENSCSAVP00000012905	984 (aa)	-	H2Z5P3
ENSCSAVT00000013053	-	4513	-	ENSCSAVP00000012904	1345 (aa)	-	H2Z5P2
ENSCSAVT00000013052	-	701	-	ENSCSAVP00000012903	177 (aa)	-	H2Z5P1

Gene Model

Click here to download ENSCSAVG00000007580's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000007580's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000007580	-	68	37.122	ENSCSAVG00000004620	-	91	37.122
ENSCSAVG00000007580	-	80	37.286	ENSCSAVG00000004448	-	79	39.846
ENSCSAVG00000007580	-	59	37.881	ENSCSAVG00000005559	-	64	36.257
ENSCSAVG00000007580	-	60	41.051	ENSCSAVG00000005900	-	100	33.119

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000007580	-	93	60.314	ENSG00000173575	CHD2	87	83.673	Homo_sapiens
ENSCSAVG00000007580	-	94	58.635	ENSAPOG00000008913	chd2	76	52.878	Acanthochromis_polyacanthus
ENSCSAVG00000007580	-	76	63.171	ENSAMEG00000010805	-	82	60.393	Ailuropoda_melanoleuca
ENSCSAVG00000007580	-	94	58.428	ENSAOCG00000016332	chd2	74	52.806	Amphiprion_ocellaris
ENSCSAVG00000007580	-	95	58.002	ENSAPEG00000016676	chd2	78	53.034	Amphiprion_percula
ENSCSAVG00000007580	-	94	58.031	ENSATEG00000005246	chd2	76	52.168	Anabas_testudineus
ENSCSAVG00000007580	-	99	52.920	ENSAPLG00000011141	-	74	54.493	Anas_platyrhynchos
ENSCSAVG00000007580	-	93	59.212	ENSACAG00000000088	-	74	52.487	Anolis_carolinensis
ENSCSAVG00000007580	-	93	60.314	ENSANAG00000024017	-	74	54.414	Aotus_nancymaae
ENSCSAVG00000007580	-	94	58.125	ENSACLG00000021370	chd2	76	52.495	Astatotilapia_calliptera
ENSCSAVG00000007580	-	69	67.199	ENSBTAG00000017776	CHD2	99	64.380	Bos_taurus
ENSCSAVG00000007580	-	93	60.209	ENSCJAG00000020444	-	74	54.269	Callithrix_jacchus
ENSCSAVG00000007580	-	96	58.519	ENSCAFG00000010998	CHD2	83	56.874	Canis_familiaris
ENSCSAVG00000007580	-	93	59.267	ENSCHIG00000022261	-	74	53.618	Capra_hircus
ENSCSAVG00000007580	-	93	60.000	ENSTSYG00000003272	-	78	54.197	Carlito_syrichta
ENSCSAVG00000007580	-	80	62.791	ENSCPOG00000005800	-	65	59.980	Cavia_porcellus
ENSCSAVG00000007580	-	93	60.314	ENSCCAG00000035304	-	74	54.414	Cebus_capucinus
ENSCSAVG00000007580	-	93	60.314	ENSCATG00000031069	-	74	54.486	Cercocebus_atys
ENSCSAVG00000007580	-	93	60.314	ENSCLAG00000016269	-	74	54.342	Chinchilla_lanigera
ENSCSAVG00000007580	-	93	60.314	ENSCSAG00000017007	-	74	54.414	Chlorocebus_sabaeus
ENSCSAVG00000007580	-	82	65.224	ENSCHOG00000000608	-	69	62.421	Choloepus_hoffmanni
ENSCSAVG00000007580	-	92	59.653	ENSCPBG00000018049	-	95	64.057	Chrysemys_picta_bellii
ENSCSAVG00000007580	-	93	60.314	ENSCANG00000038126	-	74	54.414	Colobus_angolensis_palliatus
ENSCSAVG00000007580	-	93	60.000	ENSCGRG00001006649	Chd2	74	54.414	Cricetulus_griseus_chok1gshd
ENSCSAVG00000007580	-	93	60.000	ENSCGRG00000018154	Chd2	74	54.414	Cricetulus_griseus_crigri
ENSCSAVG00000007580	-	94	54.114	ENSCSEG00000003646	chd2	74	48.789	Cynoglossus_semilaevis
ENSCSAVG00000007580	-	94	55.579	ENSCVAG00000002427	chd2	76	50.257	Cyprinodon_variegatus
ENSCSAVG00000007580	-	94	58.236	ENSDARG00000060687	chd2	78	54.227	Danio_rerio
ENSCSAVG00000007580	-	93	59.623	ENSDNOG00000009796	-	74	53.796	Dasypus_novemcinctus
ENSCSAVG00000007580	-	80	58.128	ENSEBUG00000014994	chd2	78	58.683	Eptatretus_burgeri
ENSCSAVG00000007580	-	93	61.654	ENSEASG00005015526	-	88	59.229	Equus_asinus_asinus
ENSCSAVG00000007580	-	94	57.595	ENSELUG00000017981	chd2	78	52.475	Esox_lucius
ENSCSAVG00000007580	-	92	59.259	ENSFALG00000010369	-	74	54.519	Ficedula_albicollis
ENSCSAVG00000007580	-	93	60.209	ENSFDAG00000020651	-	74	54.124	Fukomys_damarensis
ENSCSAVG00000007580	-	98	52.083	ENSFHEG00000002119	chd2	77	51.977	Fundulus_heteroclitus
ENSCSAVG00000007580	-	93	56.723	ENSGMOG00000002890	chd2	77	52.203	Gadus_morhua
ENSCSAVG00000007580	-	92	59.048	ENSGALG00000006949	CHD2	74	54.447	Gallus_gallus
ENSCSAVG00000007580	-	94	56.743	ENSGAFG00000001905	chd2	76	51.655	Gambusia_affinis
ENSCSAVG00000007580	-	99	53.095	ENSGACG00000013246	chd2	77	53.023	Gasterosteus_aculeatus
ENSCSAVG00000007580	-	92	60.283	ENSGAGG00000013176	-	99	63.919	Gopherus_agassizii
ENSCSAVG00000007580	-	93	60.254	ENSGGOG00000015677	CHD2	74	53.807	Gorilla_gorilla
ENSCSAVG00000007580	-	94	58.125	ENSHBUG00000017947	chd2	77	52.457	Haplochromis_burtoni
ENSCSAVG00000007580	-	93	60.314	ENSHGLG00000004435	CHD2	74	54.124	Heterocephalus_glaber_female
ENSCSAVG00000007580	-	93	60.168	ENSHGLG00100016376	-	74	54.019	Heterocephalus_glaber_male
ENSCSAVG00000007580	-	99	51.679	ENSHCOG00000008855	chd2	76	52.350	Hippocampus_comes
ENSCSAVG00000007580	-	93	58.455	ENSIPUG00000000488	chd2	76	53.813	Ictalurus_punctatus
ENSCSAVG00000007580	-	93	60.209	ENSSTOG00000001270	-	74	54.342	Ictidomys_tridecemlineatus
ENSCSAVG00000007580	-	93	59.621	ENSJJAG00000000213	Chd2	74	54.052	Jaculus_jaculus
ENSCSAVG00000007580	-	95	56.557	ENSKMAG00000015849	chd2	83	53.261	Kryptolebias_marmoratus
ENSCSAVG00000007580	-	93	59.895	ENSLAFG00000016885	-	99	63.510	Loxodonta_africana
ENSCSAVG00000007580	-	93	60.314	ENSMFAG00000033343	-	74	54.414	Macaca_fascicularis
ENSCSAVG00000007580	-	93	60.314	ENSMMUG00000011782	-	74	54.414	Macaca_mulatta
ENSCSAVG00000007580	-	93	59.979	ENSMNEG00000036875	-	74	54.191	Macaca_nemestrina
ENSCSAVG00000007580	-	93	60.314	ENSMLEG00000035026	-	74	54.414	Mandrillus_leucophaeus
ENSCSAVG00000007580	-	94	58.929	ENSMAMG00000009082	chd2	77	52.436	Mastacembelus_armatus
ENSCSAVG00000007580	-	94	58.125	ENSMZEG00005021333	chd2	76	52.495	Maylandia_zebra
ENSCSAVG00000007580	-	92	58.985	ENSMGAG00000008966	-	74	54.480	Meleagris_gallopavo
ENSCSAVG00000007580	-	93	58.977	ENSMICG00000000332	-	74	53.729	Microcebus_murinus
ENSCSAVG00000007580	-	93	60.000	ENSMOCG00000015124	Chd2	74	54.269	Microtus_ochrogaster
ENSCSAVG00000007580	-	92	59.534	ENSMODG00000013158	-	74	53.991	Monodelphis_domestica
ENSCSAVG00000007580	-	94	57.557	ENSMALG00000007755	chd2	76	52.131	Monopterus_albus
ENSCSAVG00000007580	-	93	60.105	MGP_CAROLIEiJ_G0029860	Chd2	74	54.269	Mus_caroli
ENSCSAVG00000007580	-	93	60.000	ENSMUSG00000078671	Chd2	74	54.124	Mus_musculus
ENSCSAVG00000007580	-	93	60.105	MGP_PahariEiJ_G0013082	Chd2	74	54.381	Mus_pahari
ENSCSAVG00000007580	-	93	60.000	MGP_SPRETEiJ_G0030962	Chd2	74	54.124	Mus_spretus
ENSCSAVG00000007580	-	93	60.000	ENSMPUG00000017577	-	74	54.197	Mustela_putorius_furo
ENSCSAVG00000007580	-	93	59.645	ENSMLUG00000009292	-	74	53.681	Myotis_lucifugus
ENSCSAVG00000007580	-	93	60.105	ENSNGAG00000010792	Chd2	74	54.197	Nannospalax_galili
ENSCSAVG00000007580	-	94	58.075	ENSNBRG00000020591	chd2	77	53.136	Neolamprologus_brichardi
ENSCSAVG00000007580	-	93	58.749	ENSNLEG00000012349	-	78	52.326	Nomascus_leucogenys
ENSCSAVG00000007580	-	75	60.053	ENSMEUG00000001522	-	55	59.713	Notamacropus_eugenii
ENSCSAVG00000007580	-	93	60.105	ENSODEG00000016028	-	74	54.532	Octodon_degus
ENSCSAVG00000007580	-	94	58.014	ENSONIG00000015136	chd2	75	53.170	Oreochromis_niloticus
ENSCSAVG00000007580	-	93	58.628	ENSOANG00000004385	-	85	53.195	Ornithorhynchus_anatinus
ENSCSAVG00000007580	-	93	60.383	ENSOCUG00000001628	-	79	64.199	Oryctolagus_cuniculus
ENSCSAVG00000007580	-	93	57.862	ENSORLG00000008403	chd2	75	54.721	Oryzias_latipes
ENSCSAVG00000007580	-	93	57.966	ENSORLG00020004138	chd2	74	52.632	Oryzias_latipes_hni
ENSCSAVG00000007580	-	96	54.602	ENSOMEG00000005831	chd2	76	50.730	Oryzias_melastigma
ENSCSAVG00000007580	-	93	57.247	ENSOGAG00000010399	-	74	52.533	Otolemur_garnettii
ENSCSAVG00000007580	-	93	60.000	ENSOARG00000010343	-	75	54.197	Ovis_aries
ENSCSAVG00000007580	-	93	60.251	ENSPPAG00000030381	-	74	54.651	Pan_paniscus
ENSCSAVG00000007580	-	93	60.314	ENSPTRG00000007478	CHD2	74	54.414	Pan_troglodytes
ENSCSAVG00000007580	-	93	55.870	ENSPANG00000033355	-	73	51.340	Papio_anubis
ENSCSAVG00000007580	-	94	58.610	ENSPKIG00000000495	chd2	75	53.188	Paramormyrops_kingsleyae
ENSCSAVG00000007580	-	94	56.173	ENSPMGG00000009941	chd2	84	52.905	Periophthalmus_magnuspinnatus
ENSCSAVG00000007580	-	93	60.000	ENSPEMG00000019507	Chd2	74	54.197	Peromyscus_maniculatus_bairdii
ENSCSAVG00000007580	-	53	70.833	ENSPMAG00000003871	-	100	71.023	Petromyzon_marinus
ENSCSAVG00000007580	-	92	59.957	ENSPCIG00000009417	-	83	58.220	Phascolarctos_cinereus
ENSCSAVG00000007580	-	94	57.276	ENSPFOG00000007050	chd2	74	52.780	Poecilia_formosa
ENSCSAVG00000007580	-	53	68.138	ENSPFOG00000000291	-	75	61.527	Poecilia_formosa
ENSCSAVG00000007580	-	94	57.276	ENSPLAG00000005067	chd2	74	52.852	Poecilia_latipinna
ENSCSAVG00000007580	-	94	57.379	ENSPMEG00000019628	chd2	76	52.780	Poecilia_mexicana
ENSCSAVG00000007580	-	93	58.639	ENSPPYG00000006799	-	74	53.256	Pongo_abelii
ENSCSAVG00000007580	-	93	59.958	ENSPCOG00000028084	-	74	54.342	Propithecus_coquereli
ENSCSAVG00000007580	-	94	58.125	ENSPNYG00000010273	chd2	77	52.384	Pundamilia_nyererei
ENSCSAVG00000007580	-	94	57.544	ENSPNAG00000016719	chd2	72	58.140	Pygocentrus_nattereri
ENSCSAVG00000007580	-	93	60.000	ENSRNOG00000012716	Chd2	74	54.197	Rattus_norvegicus
ENSCSAVG00000007580	-	93	60.314	ENSRBIG00000036875	-	74	53.841	Rhinopithecus_bieti
ENSCSAVG00000007580	-	93	60.314	ENSRROG00000041087	-	74	54.414	Rhinopithecus_roxellana
ENSCSAVG00000007580	-	93	60.314	ENSSBOG00000023754	-	74	54.414	Saimiri_boliviensis_boliviensis
ENSCSAVG00000007580	-	92	59.746	ENSSHAG00000012513	-	74	54.354	Sarcophilus_harrisii
ENSCSAVG00000007580	-	94	58.588	ENSSFOG00015023759	chd2	74	53.863	Scleropages_formosus
ENSCSAVG00000007580	-	94	58.118	ENSSMAG00000001726	chd2	77	52.814	Scophthalmus_maximus
ENSCSAVG00000007580	-	94	57.971	ENSSLDG00000001146	chd2	77	52.276	Seriola_lalandi_dorsalis
ENSCSAVG00000007580	-	69	67.538	ENSSARG00000014112	-	53	64.926	Sorex_araneus
ENSCSAVG00000007580	-	93	59.830	ENSSPUG00000011266	-	75	54.559	Sphenodon_punctatus
ENSCSAVG00000007580	-	94	58.178	ENSSPAG00000016452	chd2	77	52.527	Stegastes_partitus
ENSCSAVG00000007580	-	93	60.733	ENSSSCG00000002266	-	82	54.676	Sus_scrofa
ENSCSAVG00000007580	-	92	59.153	ENSTGUG00000008540	-	74	54.447	Taeniopygia_guttata
ENSCSAVG00000007580	-	94	55.708	ENSTRUG00000008842	chd2	74	50.861	Takifugu_rubripes
ENSCSAVG00000007580	-	93	58.712	ENSTNIG00000010760	chd2	85	56.476	Tetraodon_nigroviridis
ENSCSAVG00000007580	-	72	63.620	ENSTBEG00000017730	-	58	56.493	Tupaia_belangeri
ENSCSAVG00000007580	-	93	60.209	ENSTTRG00000000430	-	74	54.414	Tursiops_truncatus
ENSCSAVG00000007580	-	99	53.880	ENSUMAG00000000083	-	73	54.665	Ursus_maritimus
ENSCSAVG00000007580	-	77	71.429	ENSVPAG00000009645	-	61	71.869	Vicugna_pacos
ENSCSAVG00000007580	-	95	60.251	ENSXETG00000024129	chd2	70	58.260	Xenopus_tropicalis
ENSCSAVG00000007580	-	94	57.484	ENSXCOG00000020255	chd2	77	52.345	Xiphophorus_couchianus
ENSCSAVG00000007580	-	94	57.482	ENSXMAG00000002707	chd2	77	52.852	Xiphophorus_maculatus