EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000007662 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 10085 bases
Position: chrreftig_17:1350197-1360281
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000013040	RRM_1	PF00076.22	2.6e-43	1	2
ENSCSAVP00000013040	RRM_1	PF00076.22	2.6e-43	2	2
ENSCSAVP00000013039	RRM_1	PF00076.22	3.5e-43	1	2
ENSCSAVP00000013039	RRM_1	PF00076.22	3.5e-43	2	2
ENSCSAVP00000013038	RRM_1	PF00076.22	4.9e-43	1	2
ENSCSAVP00000013038	RRM_1	PF00076.22	4.9e-43	2	2
ENSCSAVP00000013037	RRM_1	PF00076.22	5.1e-43	1	2
ENSCSAVP00000013037	RRM_1	PF00076.22	5.1e-43	2	2
ENSCSAVP00000013036	RRM_1	PF00076.22	2.9e-38	1	2
ENSCSAVP00000013036	RRM_1	PF00076.22	2.9e-38	2	2
ENSCSAVP00000013035	RRM_1	PF00076.22	1.2e-26	1	2
ENSCSAVP00000013035	RRM_1	PF00076.22	1.2e-26	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000013189	-	1296	-	ENSCSAVP00000013040	431 (aa)	-	H2Z628
ENSCSAVT00000013188	-	1377	-	ENSCSAVP00000013039	458 (aa)	-	H2Z627
ENSCSAVT00000013185	-	1503	-	ENSCSAVP00000013036	500 (aa)	-	H2Z624
ENSCSAVT00000013184	-	1287	-	ENSCSAVP00000013035	396 (aa)	-	H2Z623
ENSCSAVT00000013187	-	1464	-	ENSCSAVP00000013038	487 (aa)	-	H2Z626
ENSCSAVT00000013186	-	1476	-	ENSCSAVP00000013037	491 (aa)	-	H2Z625

Gene Model

Click here to download ENSCSAVG00000007662's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000007662's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000007662	-	63	37.895	ENSCSAVG00000009321	-	66	37.895
ENSCSAVG00000007662	-	96	36.709	ENSCSAVG00000003440	-	97	36.709
ENSCSAVG00000007662	-	99	47.059	ENSCSAVG00000007538	-	99	47.059

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000007662	-	100	79.523	ENSCING00000003762	-	99	79.722	Ciona_intestinalis
ENSCSAVG00000007662	-	99	44.286	FBgn0000114	bru1	100	40.691	Drosophila_melanogaster
ENSCSAVG00000007662	-	95	76.842	FBgn0262475	bru2	100	42.000	Drosophila_melanogaster