EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000007670 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 25591 bases
Position: chrreftig_54:1045780-1071370
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000013058	ResIII	PF04851.15	4e-25	1	2
ENSCSAVP00000013058	ResIII	PF04851.15	4e-25	2	2
ENSCSAVP00000013056	ResIII	PF04851.15	1.1e-24	1	2
ENSCSAVP00000013056	ResIII	PF04851.15	1.1e-24	2	2
ENSCSAVP00000013055	ResIII	PF04851.15	1.1e-24	1	2
ENSCSAVP00000013055	ResIII	PF04851.15	1.1e-24	2	2
ENSCSAVP00000013054	ResIII	PF04851.15	1.3e-24	1	2
ENSCSAVP00000013054	ResIII	PF04851.15	1.3e-24	2	2
ENSCSAVP00000013057	ResIII	PF04851.15	1.9e-24	1	2
ENSCSAVP00000013057	ResIII	PF04851.15	1.9e-24	2	2
ENSCSAVP00000013059	ResIII	PF04851.15	6.5e-09	1	1
ENSCSAVP00000013058	DEAD	PF00270.29	6.9e-54	1	2
ENSCSAVP00000013058	DEAD	PF00270.29	6.9e-54	2	2
ENSCSAVP00000013055	DEAD	PF00270.29	1.1e-53	1	2
ENSCSAVP00000013055	DEAD	PF00270.29	1.1e-53	2	2
ENSCSAVP00000013056	DEAD	PF00270.29	1.2e-53	1	2
ENSCSAVP00000013056	DEAD	PF00270.29	1.2e-53	2	2
ENSCSAVP00000013054	DEAD	PF00270.29	1.3e-53	1	2
ENSCSAVP00000013054	DEAD	PF00270.29	1.3e-53	2	2
ENSCSAVP00000013057	DEAD	PF00270.29	3.1e-53	1	2
ENSCSAVP00000013057	DEAD	PF00270.29	3.1e-53	2	2
ENSCSAVP00000013059	DEAD	PF00270.29	2e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000013208	-	1269	-	ENSCSAVP00000013059	423 (aa)	-	H2Z647
ENSCSAVT00000013203	-	5740	-	ENSCSAVP00000013054	1800 (aa)	-	H2Z642
ENSCSAVT00000013206	-	4929	-	ENSCSAVP00000013057	1643 (aa)	-	H2Z645
ENSCSAVT00000013207	-	4926	-	ENSCSAVP00000013058	1642 (aa)	-	H2Z646
ENSCSAVT00000013204	-	5100	-	ENSCSAVP00000013055	1700 (aa)	-	H2Z643
ENSCSAVT00000013205	-	5220	-	ENSCSAVP00000013056	1740 (aa)	-	H2Z644

Gene Model

Click here to download ENSCSAVG00000007670's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000007670's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000007670	-	75	38.710	ENSCSAVG00000009304	-	60	38.776
ENSCSAVG00000007670	-	97	31.678	ENSCSAVG00000005094	-	91	36.023

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000007670	-	100	68.545	ENSG00000112249	ASCC3	82	60.166	Homo_sapiens
ENSCSAVG00000007670	-	100	68.075	ENSAMEG00000014749	ASCC3	81	60.412	Ailuropoda_melanoleuca
ENSCSAVG00000007670	-	100	69.031	ENSACIG00000004551	ascc3	83	59.139	Amphilophus_citrinellus
ENSCSAVG00000007670	-	100	68.322	ENSAOCG00000005106	ascc3	84	59.989	Amphiprion_ocellaris
ENSCSAVG00000007670	-	100	68.322	ENSAPEG00000006181	ascc3	87	60.099	Amphiprion_percula
ENSCSAVG00000007670	-	100	67.849	ENSATEG00000024950	ascc3	81	60.537	Anabas_testudineus
ENSCSAVG00000007670	-	100	69.976	ENSAPLG00000012589	-	92	61.049	Anas_platyrhynchos
ENSCSAVG00000007670	-	100	68.075	ENSACAG00000010080	ASCC3	81	60.670	Anolis_carolinensis
ENSCSAVG00000007670	-	100	68.779	ENSANAG00000021476	ASCC3	81	60.680	Aotus_nancymaae
ENSCSAVG00000007670	-	100	68.558	ENSACLG00000006736	ascc3	92	60.760	Astatotilapia_calliptera
ENSCSAVG00000007670	-	100	65.721	ENSAMXG00000001395	ascc3	82	57.606	Astyanax_mexicanus
ENSCSAVG00000007670	-	100	68.310	ENSBTAG00000020482	ASCC3	81	60.736	Bos_taurus
ENSCSAVG00000007670	-	99	57.477	WBGene00013189	Y54E2A.4	99	45.068	Caenorhabditis_elegans
ENSCSAVG00000007670	-	100	68.779	ENSCJAG00000001507	ASCC3	83	60.736	Callithrix_jacchus
ENSCSAVG00000007670	-	100	68.075	ENSCAFG00000003554	ASCC3	81	60.211	Canis_familiaris
ENSCSAVG00000007670	-	100	68.075	ENSCAFG00020016899	ASCC3	81	60.211	Canis_lupus_dingo
ENSCSAVG00000007670	-	100	68.075	ENSCHIG00000023605	ASCC3	81	60.736	Capra_hircus
ENSCSAVG00000007670	-	100	68.545	ENSTSYG00000006324	ASCC3	78	64.104	Carlito_syrichta
ENSCSAVG00000007670	-	99	67.089	ENSCAPG00000010888	ASCC3	80	63.686	Cavia_aperea
ENSCSAVG00000007670	-	100	68.075	ENSCPOG00000013989	ASCC3	81	59.799	Cavia_porcellus
ENSCSAVG00000007670	-	100	68.779	ENSCCAG00000024230	ASCC3	81	60.625	Cebus_capucinus
ENSCSAVG00000007670	-	100	68.545	ENSCATG00000011281	ASCC3	82	60.276	Cercocebus_atys
ENSCSAVG00000007670	-	100	67.840	ENSCLAG00000009794	ASCC3	81	60.491	Chinchilla_lanigera
ENSCSAVG00000007670	-	100	68.310	ENSCSAG00000014674	ASCC3	82	60.276	Chlorocebus_sabaeus
ENSCSAVG00000007670	-	97	62.234	ENSCHOG00000002063	ASCC3	67	63.875	Choloepus_hoffmanni
ENSCSAVG00000007670	-	100	69.031	ENSCPBG00000003881	ASCC3	81	60.545	Chrysemys_picta_bellii
ENSCSAVG00000007670	-	100	68.545	ENSCANG00000004215	ASCC3	81	60.513	Colobus_angolensis_palliatus
ENSCSAVG00000007670	-	100	68.310	ENSCGRG00001000918	Ascc3	81	60.268	Cricetulus_griseus_chok1gshd
ENSCSAVG00000007670	-	100	68.310	ENSCGRG00000012933	Ascc3	81	60.268	Cricetulus_griseus_crigri
ENSCSAVG00000007670	-	100	68.322	ENSCSEG00000012811	ascc3	81	60.425	Cynoglossus_semilaevis
ENSCSAVG00000007670	-	100	68.794	ENSCVAG00000013014	ascc3	81	59.129	Cyprinodon_variegatus
ENSCSAVG00000007670	-	100	68.558	ENSDARG00000086678	ascc3	95	70.492	Danio_rerio
ENSCSAVG00000007670	-	99	75.000	ENSDNOG00000010279	ASCC3	93	62.803	Dasypus_novemcinctus
ENSCSAVG00000007670	-	100	68.545	ENSDORG00000008572	Ascc3	81	60.603	Dipodomys_ordii
ENSCSAVG00000007670	-	100	62.736	FBgn0038344	obe	82	54.972	Drosophila_melanogaster
ENSCSAVG00000007670	-	88	64.213	ENSETEG00000010694	-	57	64.213	Echinops_telfairi
ENSCSAVG00000007670	-	99	68.720	ENSEBUG00000007355	-	99	66.297	Eptatretus_burgeri
ENSCSAVG00000007670	-	99	38.249	ENSEBUG00000009772	-	99	64.818	Eptatretus_burgeri
ENSCSAVG00000007670	-	100	68.075	ENSEASG00005006324	ASCC3	81	60.435	Equus_asinus_asinus
ENSCSAVG00000007670	-	100	68.075	ENSECAG00000012013	ASCC3	81	60.491	Equus_caballus
ENSCSAVG00000007670	-	100	67.371	ENSEEUG00000009748	ASCC3	92	54.311	Erinaceus_europaeus
ENSCSAVG00000007670	-	100	69.976	ENSELUG00000023441	ascc3	82	60.336	Esox_lucius
ENSCSAVG00000007670	-	100	68.075	ENSFCAG00000031266	ASCC3	81	60.290	Felis_catus
ENSCSAVG00000007670	-	100	69.740	ENSFALG00000005260	ASCC3	81	60.988	Ficedula_albicollis
ENSCSAVG00000007670	-	100	67.840	ENSFDAG00000011358	ASCC3	81	60.212	Fukomys_damarensis
ENSCSAVG00000007670	-	100	69.031	ENSFHEG00000019247	ascc3	86	61.378	Fundulus_heteroclitus
ENSCSAVG00000007670	-	100	69.976	ENSGMOG00000018158	ascc3	84	59.581	Gadus_morhua
ENSCSAVG00000007670	-	100	69.504	ENSGALG00000015465	ASCC3	81	60.748	Gallus_gallus
ENSCSAVG00000007670	-	100	68.794	ENSGACG00000014141	ascc3	81	59.642	Gasterosteus_aculeatus
ENSCSAVG00000007670	-	100	69.031	ENSGAGG00000020794	ASCC3	85	64.434	Gopherus_agassizii
ENSCSAVG00000007670	-	100	68.545	ENSGGOG00000002790	ASCC3	82	60.166	Gorilla_gorilla
ENSCSAVG00000007670	-	99	77.232	ENSHBUG00000015110	ascc3	73	63.172	Haplochromis_burtoni
ENSCSAVG00000007670	-	100	68.310	ENSHGLG00000002093	ASCC3	81	60.134	Heterocephalus_glaber_female
ENSCSAVG00000007670	-	100	68.310	ENSHGLG00100005896	ASCC3	81	58.696	Heterocephalus_glaber_male
ENSCSAVG00000007670	-	100	68.794	ENSHCOG00000021142	ascc3	81	60.424	Hippocampus_comes
ENSCSAVG00000007670	-	100	69.740	ENSIPUG00000013863	ascc3	81	59.833	Ictalurus_punctatus
ENSCSAVG00000007670	-	100	68.545	ENSSTOG00000006645	ASCC3	81	59.398	Ictidomys_tridecemlineatus
ENSCSAVG00000007670	-	100	68.075	ENSJJAG00000022570	Ascc3	81	59.347	Jaculus_jaculus
ENSCSAVG00000007670	-	100	68.794	ENSKMAG00000003953	ascc3	80	60.758	Kryptolebias_marmoratus
ENSCSAVG00000007670	-	100	69.031	ENSLBEG00000009623	ascc3	96	60.067	Labrus_bergylta
ENSCSAVG00000007670	-	100	69.267	ENSLACG00000015253	ascc3	99	59.572	Latimeria_chalumnae
ENSCSAVG00000007670	-	100	68.458	ENSLOCG00000016550	ascc3	81	60.434	Lepisosteus_oculatus
ENSCSAVG00000007670	-	100	67.907	ENSLAFG00000011363	ASCC3	79	59.082	Loxodonta_africana
ENSCSAVG00000007670	-	100	68.545	ENSMFAG00000002081	ASCC3	82	60.221	Macaca_fascicularis
ENSCSAVG00000007670	-	100	68.545	ENSMMUG00000022287	ASCC3	82	60.276	Macaca_mulatta
ENSCSAVG00000007670	-	100	68.545	ENSMNEG00000032760	ASCC3	82	60.276	Macaca_nemestrina
ENSCSAVG00000007670	-	100	62.642	ENSMLEG00000035241	ASCC3	82	58.914	Mandrillus_leucophaeus
ENSCSAVG00000007670	-	100	68.322	ENSMAMG00000005917	ascc3	81	60.403	Mastacembelus_armatus
ENSCSAVG00000007670	-	100	68.558	ENSMZEG00005002710	ascc3	69	64.335	Maylandia_zebra
ENSCSAVG00000007670	-	100	69.504	ENSMGAG00000013551	ASCC3	81	60.234	Meleagris_gallopavo
ENSCSAVG00000007670	-	100	68.310	ENSMAUG00000018304	Ascc3	81	60.513	Mesocricetus_auratus
ENSCSAVG00000007670	-	100	68.545	ENSMICG00000008861	ASCC3	81	60.492	Microcebus_murinus
ENSCSAVG00000007670	-	100	68.310	ENSMOCG00000004549	Ascc3	81	60.022	Microtus_ochrogaster
ENSCSAVG00000007670	-	100	67.849	ENSMMOG00000003198	ascc3	85	57.915	Mola_mola
ENSCSAVG00000007670	-	100	68.075	ENSMODG00000018082	ASCC3	81	60.430	Monodelphis_domestica
ENSCSAVG00000007670	-	100	68.558	ENSMALG00000015536	ascc3	84	59.175	Monopterus_albus
ENSCSAVG00000007670	-	100	68.545	MGP_CAROLIEiJ_G0015302	Ascc3	82	59.802	Mus_caroli
ENSCSAVG00000007670	-	100	68.310	ENSMUSG00000038774	Ascc3	81	60.402	Mus_musculus
ENSCSAVG00000007670	-	100	68.310	MGP_SPRETEiJ_G0016111	Ascc3	81	60.290	Mus_spretus
ENSCSAVG00000007670	-	100	68.075	ENSMPUG00000001675	ASCC3	81	60.267	Mustela_putorius_furo
ENSCSAVG00000007670	-	100	68.310	ENSMLUG00000002886	ASCC3	81	60.625	Myotis_lucifugus
ENSCSAVG00000007670	-	100	68.545	ENSNGAG00000000702	Ascc3	81	60.212	Nannospalax_galili
ENSCSAVG00000007670	-	99	68.011	ENSNBRG00000022083	ascc3	87	51.532	Neolamprologus_brichardi
ENSCSAVG00000007670	-	100	68.310	ENSNLEG00000013890	ASCC3	81	60.457	Nomascus_leucogenys
ENSCSAVG00000007670	-	90	77.273	ENSMEUG00000003061	ASCC3	59	77.273	Notamacropus_eugenii
ENSCSAVG00000007670	-	100	63.615	ENSOPRG00000010249	-	55	76.596	Ochotona_princeps
ENSCSAVG00000007670	-	100	67.840	ENSODEG00000000069	ASCC3	81	60.660	Octodon_degus
ENSCSAVG00000007670	-	100	67.849	ENSONIG00000016540	ascc3	81	60.302	Oreochromis_niloticus
ENSCSAVG00000007670	-	100	68.075	ENSOANG00000008944	ASCC3	81	58.853	Ornithorhynchus_anatinus
ENSCSAVG00000007670	-	100	68.545	ENSOCUG00000002766	ASCC3	81	60.469	Oryctolagus_cuniculus
ENSCSAVG00000007670	-	100	68.794	ENSORLG00000004221	ascc3	87	60.256	Oryzias_latipes
ENSCSAVG00000007670	-	100	68.794	ENSORLG00020022595	ascc3	92	60.256	Oryzias_latipes_hni
ENSCSAVG00000007670	-	100	68.794	ENSORLG00015009231	ascc3	86	60.201	Oryzias_latipes_hsok
ENSCSAVG00000007670	-	100	68.558	ENSOMEG00000019630	ascc3	82	59.241	Oryzias_melastigma
ENSCSAVG00000007670	-	99	76.119	ENSOGAG00000009875	ASCC3	74	63.560	Otolemur_garnettii
ENSCSAVG00000007670	-	100	68.310	ENSOARG00000011627	ASCC3	81	60.848	Ovis_aries
ENSCSAVG00000007670	-	100	68.545	ENSPPAG00000030772	ASCC3	82	60.110	Pan_paniscus
ENSCSAVG00000007670	-	100	68.075	ENSPPRG00000011358	ASCC3	81	60.290	Panthera_pardus
ENSCSAVG00000007670	-	100	68.075	ENSPTIG00000006331	ASCC3	81	60.067	Panthera_tigris_altaica
ENSCSAVG00000007670	-	100	68.545	ENSPTRG00000018448	ASCC3	82	60.055	Pan_troglodytes
ENSCSAVG00000007670	-	100	68.779	ENSPANG00000006307	ASCC3	82	60.331	Papio_anubis
ENSCSAVG00000007670	-	100	68.322	ENSPKIG00000013639	ascc3	81	60.369	Paramormyrops_kingsleyae
ENSCSAVG00000007670	-	100	69.031	ENSPSIG00000002620	-	95	59.615	Pelodiscus_sinensis
ENSCSAVG00000007670	-	100	68.075	ENSPEMG00000015319	Ascc3	82	59.648	Peromyscus_maniculatus_bairdii
ENSCSAVG00000007670	-	100	68.075	ENSPMAG00000002163	-	100	65.351	Petromyzon_marinus
ENSCSAVG00000007670	-	100	68.075	ENSPCIG00000017288	ASCC3	81	60.884	Phascolarctos_cinereus
ENSCSAVG00000007670	-	100	68.794	ENSPFOG00000001462	ascc3	78	64.091	Poecilia_formosa
ENSCSAVG00000007670	-	100	69.267	ENSPREG00000017616	ascc3	81	60.312	Poecilia_reticulata
ENSCSAVG00000007670	-	100	68.545	ENSPPYG00000016869	ASCC3	81	59.392	Pongo_abelii
ENSCSAVG00000007670	-	100	75.532	ENSPCAG00000008834	ASCC3	79	57.448	Procavia_capensis
ENSCSAVG00000007670	-	100	67.136	ENSPVAG00000012827	ASCC3	81	55.884	Pteropus_vampyrus
ENSCSAVG00000007670	-	100	68.558	ENSPNYG00000018913	ascc3	92	60.704	Pundamilia_nyererei
ENSCSAVG00000007670	-	100	67.612	ENSPNAG00000016413	ascc3	92	59.978	Pygocentrus_nattereri
ENSCSAVG00000007670	-	100	68.545	ENSRNOG00000037604	Ascc3	82	59.922	Rattus_norvegicus
ENSCSAVG00000007670	-	100	68.545	ENSRROG00000045402	ASCC3	82	60.221	Rhinopithecus_roxellana
ENSCSAVG00000007670	-	99	53.162	YGR271W	-	89	44.655	Saccharomyces_cerevisiae
ENSCSAVG00000007670	-	100	68.779	ENSSBOG00000025142	ASCC3	81	60.625	Saimiri_boliviensis_boliviensis
ENSCSAVG00000007670	-	100	68.075	ENSSHAG00000016496	ASCC3	82	60.318	Sarcophilus_harrisii
ENSCSAVG00000007670	-	100	67.136	ENSSFOG00015010273	ascc3	83	59.844	Scleropages_formosus
ENSCSAVG00000007670	-	100	77.778	ENSSMAG00000012927	ascc3	81	60.537	Scophthalmus_maximus
ENSCSAVG00000007670	-	100	68.794	ENSSDUG00000010897	ascc3	81	60.557	Seriola_dumerili
ENSCSAVG00000007670	-	100	68.794	ENSSLDG00000021782	ascc3	81	60.557	Seriola_lalandi_dorsalis
ENSCSAVG00000007670	-	100	72.000	ENSSARG00000001858	ASCC3	73	56.691	Sorex_araneus
ENSCSAVG00000007670	-	100	69.740	ENSSPUG00000001842	ASCC3	81	60.234	Sphenodon_punctatus
ENSCSAVG00000007670	-	100	68.085	ENSSPAG00000007677	ascc3	81	60.501	Stegastes_partitus
ENSCSAVG00000007670	-	100	68.075	ENSSSCG00000004358	ASCC3	89	60.736	Sus_scrofa
ENSCSAVG00000007670	-	100	69.087	ENSTGUG00000012262	ASCC3	90	60.542	Taeniopygia_guttata
ENSCSAVG00000007670	-	100	69.882	ENSTNIG00000005079	ascc3	82	58.124	Tetraodon_nigroviridis
ENSCSAVG00000007670	-	100	68.779	ENSTBEG00000015236	ASCC3	71	65.672	Tupaia_belangeri
ENSCSAVG00000007670	-	99	67.089	ENSTTRG00000008255	ASCC3	77	62.830	Tursiops_truncatus
ENSCSAVG00000007670	-	100	68.075	ENSUAMG00000023340	-	98	65.488	Ursus_americanus
ENSCSAVG00000007670	-	100	68.075	ENSUMAG00000021200	ASCC3	81	59.688	Ursus_maritimus
ENSCSAVG00000007670	-	100	68.075	ENSVPAG00000001408	ASCC3	81	58.305	Vicugna_pacos
ENSCSAVG00000007670	-	100	68.075	ENSVVUG00000015397	ASCC3	81	60.211	Vulpes_vulpes
ENSCSAVG00000007670	-	100	69.014	ENSXETG00000032212	-	98	58.876	Xenopus_tropicalis
ENSCSAVG00000007670	-	100	69.031	ENSXMAG00000000071	ascc3	81	60.535	Xiphophorus_maculatus