EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000007684 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 20476 bases
Position: chrreftig_35:1643311-1663786
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000013080	tRNA_anti-codon	PF01336.25	1.2e-13	1	1
ENSCSAVP00000013081	tRNA_anti-codon	PF01336.25	1.2e-13	1	1
ENSCSAVP00000013080	tRNA-synt_2	PF00152.20	3.9e-81	1	1
ENSCSAVP00000013081	tRNA-synt_2	PF00152.20	5.2e-81	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000013229	-	2036	-	ENSCSAVP00000013080	575 (aa)	-	H2Z668
ENSCSAVT00000013230	-	1704	-	ENSCSAVP00000013081	568 (aa)	-	H2Z669

Gene Model

Click here to download ENSCSAVG00000007684's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000007684's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000007684	-	56	91.022	ENSCSAVG00000001136	-	98	99.609

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000007684	-	98	68.924	ENSG00000065427	KARS	100	72.549	Homo_sapiens
ENSCSAVG00000007684	-	99	69.649	ENSAPOG00000010997	kars	99	69.298	Acanthochromis_polyacanthus
ENSCSAVG00000007684	-	100	65.112	ENSAMEG00000005347	KARS	89	66.310	Ailuropoda_melanoleuca
ENSCSAVG00000007684	-	98	64.261	ENSACIG00000000304	kars	98	64.561	Amphilophus_citrinellus
ENSCSAVG00000007684	-	99	69.352	ENSAOCG00000012971	kars	97	69.340	Amphiprion_ocellaris
ENSCSAVG00000007684	-	99	68.870	ENSAPEG00000011144	kars	99	68.870	Amphiprion_percula
ENSCSAVG00000007684	-	98	69.136	ENSATEG00000004954	kars	98	69.136	Anabas_testudineus
ENSCSAVG00000007684	-	97	65.591	ENSAPLG00000012705	KARS	90	70.884	Anas_platyrhynchos
ENSCSAVG00000007684	-	97	66.018	ENSACAG00000007577	KARS	89	66.903	Anolis_carolinensis
ENSCSAVG00000007684	-	100	66.667	ENSANAG00000030403	-	95	68.783	Aotus_nancymaae
ENSCSAVG00000007684	-	98	57.241	ENSANAG00000031739	-	92	57.019	Aotus_nancymaae
ENSCSAVG00000007684	-	99	68.893	ENSACLG00000001613	kars	96	69.014	Astatotilapia_calliptera
ENSCSAVG00000007684	-	99	68.815	ENSAMXG00000030719	kars	98	68.651	Astyanax_mexicanus
ENSCSAVG00000007684	-	98	68.301	ENSBTAG00000015677	KARS	73	68.301	Bos_taurus
ENSCSAVG00000007684	-	98	59.894	WBGene00002238	kars-1	98	62.846	Caenorhabditis_elegans
ENSCSAVG00000007684	-	100	66.321	ENSCJAG00000014213	KARS	95	68.783	Callithrix_jacchus
ENSCSAVG00000007684	-	100	66.149	ENSCAFG00000020069	KARS	89	67.438	Canis_familiaris
ENSCSAVG00000007684	-	98	68.403	ENSCAFG00020001721	KARS	96	68.237	Canis_lupus_dingo
ENSCSAVG00000007684	-	100	64.645	ENSCHIG00000016073	-	92	65.658	Capra_hircus
ENSCSAVG00000007684	-	98	68.467	ENSCHIG00000014108	-	96	68.126	Capra_hircus
ENSCSAVG00000007684	-	98	68.935	ENSTSYG00000001643	KARS	96	68.772	Carlito_syrichta
ENSCSAVG00000007684	-	100	61.765	ENSCAPG00000016234	KARS	88	65.333	Cavia_aperea
ENSCSAVG00000007684	-	98	68.412	ENSCPOG00000012036	KARS	97	67.535	Cavia_porcellus
ENSCSAVG00000007684	-	100	66.494	ENSCCAG00000034307	-	95	68.959	Cebus_capucinus
ENSCSAVG00000007684	-	96	52.793	ENSCCAG00000030337	-	99	54.898	Cebus_capucinus
ENSCSAVG00000007684	-	98	68.056	ENSCATG00000038129	KARS	90	69.680	Cercocebus_atys
ENSCSAVG00000007684	-	98	67.888	ENSCLAG00000007905	KARS	96	67.719	Chinchilla_lanigera
ENSCSAVG00000007684	-	100	65.803	ENSCSAG00000003664	KARS	85	69.680	Chlorocebus_sabaeus
ENSCSAVG00000007684	-	83	71.215	ENSCHOG00000013447	KARS	73	74.229	Choloepus_hoffmanni
ENSCSAVG00000007684	-	98	61.896	ENSCPBG00000002553	-	95	65.709	Chrysemys_picta_bellii
ENSCSAVG00000007684	-	100	67.539	ENSCPBG00000026969	KARS	95	70.357	Chrysemys_picta_bellii
ENSCSAVG00000007684	-	99	90.559	ENSCING00000009513	-	99	90.559	Ciona_intestinalis
ENSCSAVG00000007684	-	98	65.625	ENSCANG00000032813	KARS	96	65.271	Colobus_angolensis_palliatus
ENSCSAVG00000007684	-	99	67.526	ENSCGRG00001004055	KARS	97	67.698	Cricetulus_griseus_chok1gshd
ENSCSAVG00000007684	-	99	67.526	ENSCGRG00000014242	KARS	97	67.698	Cricetulus_griseus_crigri
ENSCSAVG00000007684	-	99	67.657	ENSCSEG00000008324	kars	99	68.063	Cynoglossus_semilaevis
ENSCSAVG00000007684	-	99	69.177	ENSCVAG00000019686	kars	99	69.177	Cyprinodon_variegatus
ENSCSAVG00000007684	-	98	68.596	ENSDARG00000103799	kars	98	71.825	Danio_rerio
ENSCSAVG00000007684	-	100	66.149	ENSDNOG00000002241	KARS	84	70.857	Dasypus_novemcinctus
ENSCSAVG00000007684	-	100	65.799	ENSDORG00000004780	-	97	67.764	Dipodomys_ordii
ENSCSAVG00000007684	-	96	53.476	ENSDORG00000024214	-	97	53.819	Dipodomys_ordii
ENSCSAVG00000007684	-	96	69.550	FBgn0027084	LysRS	97	69.355	Drosophila_melanogaster
ENSCSAVG00000007684	-	100	66.149	ENSETEG00000008353	KARS	85	69.492	Echinops_telfairi
ENSCSAVG00000007684	-	98	67.725	ENSEBUG00000001284	-	97	67.019	Eptatretus_burgeri
ENSCSAVG00000007684	-	98	68.357	ENSEASG00005013497	KARS	95	68.014	Equus_asinus_asinus
ENSCSAVG00000007684	-	98	68.357	ENSECAG00000013424	KARS	95	68.014	Equus_caballus
ENSCSAVG00000007684	-	100	60.696	ENSEEUG00000007042	KARS	91	62.721	Erinaceus_europaeus
ENSCSAVG00000007684	-	95	61.594	ENSELUG00000014575	kars	94	61.594	Esox_lucius
ENSCSAVG00000007684	-	98	67.652	ENSFCAG00000008573	KARS	96	67.539	Felis_catus
ENSCSAVG00000007684	-	100	67.073	ENSFALG00000002543	KARS	95	69.875	Ficedula_albicollis
ENSCSAVG00000007684	-	98	68.293	ENSFDAG00000007155	KARS	96	67.951	Fukomys_damarensis
ENSCSAVG00000007684	-	99	68.531	ENSFHEG00000006172	kars	99	68.531	Fundulus_heteroclitus
ENSCSAVG00000007684	-	99	67.539	ENSGMOG00000002633	kars	93	67.539	Gadus_morhua
ENSCSAVG00000007684	-	100	67.190	ENSGALG00000000907	KARS	97	70.090	Gallus_gallus
ENSCSAVG00000007684	-	98	69.947	ENSGAFG00000017252	kars	98	70.070	Gambusia_affinis
ENSCSAVG00000007684	-	99	67.535	ENSGACG00000015749	kars	96	67.535	Gasterosteus_aculeatus
ENSCSAVG00000007684	-	98	62.970	ENSGAGG00000011960	-	94	68.463	Gopherus_agassizii
ENSCSAVG00000007684	-	100	66.492	ENSGAGG00000023836	KARS	95	69.162	Gopherus_agassizii
ENSCSAVG00000007684	-	98	68.924	ENSGGOG00000005515	KARS	96	68.761	Gorilla_gorilla
ENSCSAVG00000007684	-	99	68.893	ENSHBUG00000013619	kars	96	69.014	Haplochromis_burtoni
ENSCSAVG00000007684	-	98	55.979	ENSHGLG00000001298	-	96	56.326	Heterocephalus_glaber_female
ENSCSAVG00000007684	-	99	67.931	ENSHGLG00000011898	KARS	97	67.418	Heterocephalus_glaber_female
ENSCSAVG00000007684	-	98	61.606	ENSHGLG00000015235	-	96	61.228	Heterocephalus_glaber_female
ENSCSAVG00000007684	-	99	67.931	ENSHGLG00100012264	KARS	97	67.418	Heterocephalus_glaber_male
ENSCSAVG00000007684	-	98	61.431	ENSHGLG00100012523	-	96	61.053	Heterocephalus_glaber_male
ENSCSAVG00000007684	-	98	55.806	ENSHGLG00100006466	-	96	56.153	Heterocephalus_glaber_male
ENSCSAVG00000007684	-	98	68.947	ENSHCOG00000002900	kars	95	68.947	Hippocampus_comes
ENSCSAVG00000007684	-	98	67.314	ENSIPUG00000009862	kars	97	68.280	Ictalurus_punctatus
ENSCSAVG00000007684	-	98	68.586	ENSSTOG00000004205	KARS	97	68.111	Ictidomys_tridecemlineatus
ENSCSAVG00000007684	-	99	67.993	ENSJJAG00000020406	Kars	97	67.826	Jaculus_jaculus
ENSCSAVG00000007684	-	98	69.149	ENSKMAG00000006434	kars	98	69.149	Kryptolebias_marmoratus
ENSCSAVG00000007684	-	99	67.764	ENSLBEG00000026537	kars	95	67.764	Labrus_bergylta
ENSCSAVG00000007684	-	97	69.286	ENSLACG00000006667	KARS	91	69.286	Latimeria_chalumnae
ENSCSAVG00000007684	-	92	65.524	ENSLACG00000016399	-	99	67.583	Latimeria_chalumnae
ENSCSAVG00000007684	-	93	65.028	ENSLOCG00000013608	-	92	67.653	Lepisosteus_oculatus
ENSCSAVG00000007684	-	99	69.686	ENSLOCG00000004002	kars	98	69.686	Lepisosteus_oculatus
ENSCSAVG00000007684	-	100	65.458	ENSLAFG00000015340	KARS	88	66.547	Loxodonta_africana
ENSCSAVG00000007684	-	98	67.882	ENSMFAG00000040024	KARS	96	67.539	Macaca_fascicularis
ENSCSAVG00000007684	-	88	63.086	ENSMNEG00000035832	-	96	65.663	Macaca_nemestrina
ENSCSAVG00000007684	-	98	67.882	ENSMNEG00000042879	-	96	67.539	Macaca_nemestrina
ENSCSAVG00000007684	-	98	67.882	ENSMLEG00000034947	KARS	96	67.539	Mandrillus_leucophaeus
ENSCSAVG00000007684	-	100	66.434	ENSMAMG00000021559	kars	91	69.120	Mastacembelus_armatus
ENSCSAVG00000007684	-	99	68.893	ENSMZEG00005014382	kars	96	69.014	Maylandia_zebra
ENSCSAVG00000007684	-	99	65.217	ENSMGAG00000009000	KARS	98	68.613	Meleagris_gallopavo
ENSCSAVG00000007684	-	98	68.696	ENSMICG00000011997	KARS	96	68.182	Microcebus_murinus
ENSCSAVG00000007684	-	99	66.551	ENSMOCG00000019029	-	97	66.551	Microtus_ochrogaster
ENSCSAVG00000007684	-	99	68.467	ENSMOCG00000011829	Kars	97	68.467	Microtus_ochrogaster
ENSCSAVG00000007684	-	97	68.929	ENSMMOG00000016934	kars	93	70.992	Mola_mola
ENSCSAVG00000007684	-	100	65.165	ENSMODG00000002215	-	91	69.143	Monodelphis_domestica
ENSCSAVG00000007684	-	97	65.832	ENSMODG00000002238	-	84	70.117	Monodelphis_domestica
ENSCSAVG00000007684	-	99	67.882	ENSMALG00000020858	kars	99	67.882	Monopterus_albus
ENSCSAVG00000007684	-	84	71.200	MGP_CAROLIEiJ_G0031588	Kars	97	72.527	Mus_caroli
ENSCSAVG00000007684	-	99	68.103	ENSMUSG00000031948	Kars	97	68.103	Mus_musculus
ENSCSAVG00000007684	-	99	67.759	MGP_PahariEiJ_G0023186	Kars	97	67.759	Mus_pahari
ENSCSAVG00000007684	-	99	68.103	MGP_SPRETEiJ_G0032706	Kars	97	68.103	Mus_spretus
ENSCSAVG00000007684	-	100	66.494	ENSMPUG00000009871	KARS	89	67.794	Mustela_putorius_furo
ENSCSAVG00000007684	-	100	65.976	ENSMLUG00000015119	-	95	68.078	Myotis_lucifugus
ENSCSAVG00000007684	-	91	43.982	ENSMLUG00000026871	-	94	43.982	Myotis_lucifugus
ENSCSAVG00000007684	-	99	67.944	ENSNGAG00000018820	-	96	67.944	Nannospalax_galili
ENSCSAVG00000007684	-	98	64.539	ENSNGAG00000022944	-	96	66.310	Nannospalax_galili
ENSCSAVG00000007684	-	99	69.069	ENSNBRG00000011098	kars	96	69.190	Neolamprologus_brichardi
ENSCSAVG00000007684	-	98	68.750	ENSNLEG00000013072	KARS	96	68.586	Nomascus_leucogenys
ENSCSAVG00000007684	-	100	64.789	ENSMEUG00000008684	KARS	87	68.431	Notamacropus_eugenii
ENSCSAVG00000007684	-	100	65.458	ENSOPRG00000012544	KARS	85	70.328	Ochotona_princeps
ENSCSAVG00000007684	-	100	48.070	ENSODEG00000009464	-	96	50.090	Octodon_degus
ENSCSAVG00000007684	-	100	65.625	ENSODEG00000013099	-	96	67.776	Octodon_degus
ENSCSAVG00000007684	-	99	69.244	ENSONIG00000005937	kars	98	69.366	Oreochromis_niloticus
ENSCSAVG00000007684	-	100	66.143	ENSOANG00000008179	KARS	86	71.820	Ornithorhynchus_anatinus
ENSCSAVG00000007684	-	98	63.937	ENSOCUG00000015553	KARS	95	63.763	Oryctolagus_cuniculus
ENSCSAVG00000007684	-	96	70.018	ENSORLG00000007627	kars	94	68.750	Oryzias_latipes
ENSCSAVG00000007684	-	96	70.018	ENSORLG00020010056	kars	94	68.750	Oryzias_latipes_hni
ENSCSAVG00000007684	-	96	70.018	ENSORLG00015008179	kars	94	68.750	Oryzias_latipes_hsok
ENSCSAVG00000007684	-	98	69.474	ENSOMEG00000001710	kars	98	69.596	Oryzias_melastigma
ENSCSAVG00000007684	-	100	62.694	ENSOGAG00000005903	KARS	89	63.345	Otolemur_garnettii
ENSCSAVG00000007684	-	95	64.065	ENSOARG00000006928	KARS	94	66.667	Ovis_aries
ENSCSAVG00000007684	-	98	69.097	ENSPPAG00000036192	KARS	96	68.935	Pan_paniscus
ENSCSAVG00000007684	-	98	67.478	ENSPPRG00000003027	KARS	96	67.365	Panthera_pardus
ENSCSAVG00000007684	-	98	67.652	ENSPTIG00000008011	KARS	96	67.539	Panthera_tigris_altaica
ENSCSAVG00000007684	-	98	69.097	ENSPTRG00000008364	KARS	96	68.935	Pan_troglodytes
ENSCSAVG00000007684	-	98	68.056	ENSPANG00000024106	KARS	89	67.714	Papio_anubis
ENSCSAVG00000007684	-	99	66.607	ENSPKIG00000009896	kars	98	68.596	Paramormyrops_kingsleyae
ENSCSAVG00000007684	-	100	66.318	ENSPSIG00000009294	KARS	89	71.815	Pelodiscus_sinensis
ENSCSAVG00000007684	-	96	64.835	ENSPSIG00000003041	-	96	67.495	Pelodiscus_sinensis
ENSCSAVG00000007684	-	96	69.636	ENSPMGG00000006117	kars	92	72.374	Periophthalmus_magnuspinnatus
ENSCSAVG00000007684	-	99	67.925	ENSPEMG00000012277	Kars	97	67.586	Peromyscus_maniculatus_bairdii
ENSCSAVG00000007684	-	99	63.620	ENSPMAG00000008360	-	90	66.607	Petromyzon_marinus
ENSCSAVG00000007684	-	100	66.725	ENSPCIG00000010761	-	95	69.204	Phascolarctos_cinereus
ENSCSAVG00000007684	-	100	65.317	ENSPCIG00000025469	-	91	66.844	Phascolarctos_cinereus
ENSCSAVG00000007684	-	96	70.705	ENSPFOG00000013253	kars	91	70.705	Poecilia_formosa
ENSCSAVG00000007684	-	98	69.611	ENSPLAG00000004189	kars	98	69.894	Poecilia_latipinna
ENSCSAVG00000007684	-	98	69.788	ENSPMEG00000015698	kars	98	70.070	Poecilia_mexicana
ENSCSAVG00000007684	-	98	69.081	ENSPREG00000023179	kars	98	69.081	Poecilia_reticulata
ENSCSAVG00000007684	-	100	66.321	ENSPPYG00000007567	KARS	89	67.438	Pongo_abelii
ENSCSAVG00000007684	-	92	62.857	ENSPCAG00000010790	KARS	98	65.294	Procavia_capensis
ENSCSAVG00000007684	-	98	65.133	ENSPCOG00000003166	KARS	87	73.093	Propithecus_coquereli
ENSCSAVG00000007684	-	100	65.976	ENSPVAG00000006746	KARS	85	69.680	Pteropus_vampyrus
ENSCSAVG00000007684	-	99	68.893	ENSPNYG00000013095	kars	96	69.014	Pundamilia_nyererei
ENSCSAVG00000007684	-	98	69.352	ENSPNAG00000013828	kars	98	69.177	Pygocentrus_nattereri
ENSCSAVG00000007684	-	100	65.517	ENSRNOG00000019456	Kars	84	70.095	Rattus_norvegicus
ENSCSAVG00000007684	-	98	68.056	ENSRBIG00000030118	KARS	90	69.680	Rhinopithecus_bieti
ENSCSAVG00000007684	-	100	65.803	ENSRROG00000041418	KARS	90	69.680	Rhinopithecus_roxellana
ENSCSAVG00000007684	-	86	31.107	YNL073W	-	86	33.400	Saccharomyces_cerevisiae
ENSCSAVG00000007684	-	98	58.188	YDR037W	KRS1	96	57.766	Saccharomyces_cerevisiae
ENSCSAVG00000007684	-	100	65.803	ENSSBOG00000019255	KARS	95	68.254	Saimiri_boliviensis_boliviensis
ENSCSAVG00000007684	-	98	58.244	ENSSHAG00000009005	-	94	61.143	Sarcophilus_harrisii
ENSCSAVG00000007684	-	100	62.783	ENSSHAG00000001359	-	92	66.226	Sarcophilus_harrisii
ENSCSAVG00000007684	-	99	56.944	ENSSHAG00000002050	-	86	58.845	Sarcophilus_harrisii
ENSCSAVG00000007684	-	99	66.725	ENSSFOG00015014837	kars	94	70.881	Scleropages_formosus
ENSCSAVG00000007684	-	99	67.535	ENSSMAG00000021441	kars	99	67.535	Scophthalmus_maximus
ENSCSAVG00000007684	-	99	68.229	ENSSDUG00000001202	kars	99	68.229	Seriola_dumerili
ENSCSAVG00000007684	-	97	68.929	ENSSLDG00000021220	kars	91	70.833	Seriola_lalandi_dorsalis
ENSCSAVG00000007684	-	79	84.158	ENSSARG00000011493	KARS	74	83.495	Sorex_araneus
ENSCSAVG00000007684	-	100	66.034	ENSSPUG00000004974	KARS	96	67.882	Sphenodon_punctatus
ENSCSAVG00000007684	-	69	60.051	ENSSPUG00000000449	-	83	69.737	Sphenodon_punctatus
ENSCSAVG00000007684	-	95	69.188	ENSSPAG00000020365	kars	91	71.537	Stegastes_partitus
ENSCSAVG00000007684	-	100	66.149	ENSSSCG00000002704	KARS	95	68.607	Sus_scrofa
ENSCSAVG00000007684	-	100	67.250	ENSTGUG00000008400	KARS	98	70.236	Taeniopygia_guttata
ENSCSAVG00000007684	-	96	69.314	ENSTRUG00000017551	kars	91	70.578	Takifugu_rubripes
ENSCSAVG00000007684	-	98	69.573	ENSTNIG00000009351	kars	97	69.519	Tetraodon_nigroviridis
ENSCSAVG00000007684	-	100	51.123	ENSTBEG00000004610	KARS	78	61.384	Tupaia_belangeri
ENSCSAVG00000007684	-	100	64.249	ENSTTRG00000001221	KARS	89	65.480	Tursiops_truncatus
ENSCSAVG00000007684	-	98	67.478	ENSUAMG00000017557	KARS	96	67.478	Ursus_americanus
ENSCSAVG00000007684	-	100	65.285	ENSUMAG00000014559	KARS	89	66.488	Ursus_maritimus
ENSCSAVG00000007684	-	100	64.076	ENSVPAG00000003716	KARS	88	65.647	Vicugna_pacos
ENSCSAVG00000007684	-	100	66.725	ENSVVUG00000024338	KARS	96	70.280	Vulpes_vulpes
ENSCSAVG00000007684	-	98	67.901	ENSXETG00000003569	kars	97	67.250	Xenopus_tropicalis
ENSCSAVG00000007684	-	99	66.784	ENSXCOG00000011313	kars	93	72.254	Xiphophorus_couchianus
ENSCSAVG00000007684	-	98	69.435	ENSXMAG00000003191	kars	98	69.435	Xiphophorus_maculatus