EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000007760 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 25995 bases
Position: chrreftig_16:1536029-1562023
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000013215	tRNA-synt_1c_C	PF03950.18	9.1e-36	1	1
ENSCSAVP00000013217	tRNA-synt_1c_C	PF03950.18	1.1e-35	1	1
ENSCSAVP00000013214	tRNA-synt_1c_C	PF03950.18	1.1e-35	1	1
ENSCSAVP00000013213	tRNA-synt_1c_C	PF03950.18	6.8e-31	1	2
ENSCSAVP00000013213	tRNA-synt_1c_C	PF03950.18	6.8e-31	2	2
ENSCSAVP00000013212	HGTP_anticodon	PF03129.20	8.7e-17	1	1
ENSCSAVP00000013216	HGTP_anticodon	PF03129.20	1.7e-16	1	1
ENSCSAVP00000013215	HGTP_anticodon	PF03129.20	3.5e-16	1	1
ENSCSAVP00000013217	HGTP_anticodon	PF03129.20	3.6e-16	1	1
ENSCSAVP00000013214	HGTP_anticodon	PF03129.20	4.4e-16	1	1
ENSCSAVP00000013213	HGTP_anticodon	PF03129.20	4.7e-16	1	1
ENSCSAVP00000013215	tRNA-synt_1c	PF00749.21	2.7e-108	1	1
ENSCSAVP00000013217	tRNA-synt_1c	PF00749.21	2.8e-108	1	1
ENSCSAVP00000013214	tRNA-synt_1c	PF00749.21	3.1e-108	1	1
ENSCSAVP00000013213	tRNA-synt_1c	PF00749.21	2.7e-102	1	2
ENSCSAVP00000013213	tRNA-synt_1c	PF00749.21	2.7e-102	2	2
ENSCSAVP00000013216	tRNA-synt_2b	PF00587.25	6e-18	1	1
ENSCSAVP00000013217	tRNA-synt_2b	PF00587.25	1.8e-17	1	1
ENSCSAVP00000013215	tRNA-synt_2b	PF00587.25	2e-17	1	1
ENSCSAVP00000013214	tRNA-synt_2b	PF00587.25	2e-17	1	1
ENSCSAVP00000013213	tRNA-synt_2b	PF00587.25	4.5e-13	1	1
ENSCSAVP00000013212	ProRS-C_1	PF09180.11	1.3e-18	1	1
ENSCSAVP00000013216	ProRS-C_1	PF09180.11	2.9e-18	1	1
ENSCSAVP00000013215	ProRS-C_1	PF09180.11	1.4e-17	1	1
ENSCSAVP00000013217	ProRS-C_1	PF09180.11	1.5e-17	1	1
ENSCSAVP00000013214	ProRS-C_1	PF09180.11	1.6e-17	1	1
ENSCSAVP00000013213	ProRS-C_1	PF09180.11	1.8e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000013361	-	1785	-	ENSCSAVP00000013212	384 (aa)	-	H2Z6K0
ENSCSAVT00000013363	-	4773	-	ENSCSAVP00000013214	1526 (aa)	-	H2Z6K2
ENSCSAVT00000013362	-	4997	-	ENSCSAVP00000013213	1589 (aa)	-	H2Z6K1
ENSCSAVT00000013365	-	1965	-	ENSCSAVP00000013216	590 (aa)	-	H2Z6K4
ENSCSAVT00000013364	-	4509	-	ENSCSAVP00000013215	1438 (aa)	-	H2Z6K3
ENSCSAVT00000013366	-	4572	-	ENSCSAVP00000013217	1464 (aa)	-	H2Z6K5

Gene Model

Click here to download ENSCSAVG00000007760's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000007760's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000007760	-	100	66.441	ENSG00000136628	EPRS	99	55.959	Homo_sapiens
ENSCSAVG00000007760	-	100	66.271	ENSAPOG00000002084	eprs	99	58.791	Acanthochromis_polyacanthus
ENSCSAVG00000007760	-	100	66.667	ENSAMEG00000009983	EPRS	99	58.996	Ailuropoda_melanoleuca
ENSCSAVG00000007760	-	100	67.454	ENSACIG00000007907	eprs	99	55.840	Amphilophus_citrinellus
ENSCSAVG00000007760	-	100	63.729	ENSAOCG00000023555	eprs	98	54.458	Amphiprion_ocellaris
ENSCSAVG00000007760	-	100	62.034	ENSAPEG00000001630	eprs	99	53.822	Amphiprion_percula
ENSCSAVG00000007760	-	100	66.441	ENSATEG00000006493	eprs	97	64.967	Anabas_testudineus
ENSCSAVG00000007760	-	100	66.780	ENSAPLG00000003240	EPRS	99	63.793	Anas_platyrhynchos
ENSCSAVG00000007760	-	100	65.144	ENSACAG00000001213	EPRS	99	55.619	Anolis_carolinensis
ENSCSAVG00000007760	-	100	56.684	ENSANAG00000022208	EPRS	99	52.094	Aotus_nancymaae
ENSCSAVG00000007760	-	100	66.441	ENSACLG00000020228	eprs	99	58.165	Astatotilapia_calliptera
ENSCSAVG00000007760	-	100	65.709	ENSAMXG00000001984	eprs	99	58.856	Astyanax_mexicanus
ENSCSAVG00000007760	-	100	67.119	ENSBTAG00000006898	EPRS	99	66.063	Bos_taurus
ENSCSAVG00000007760	-	63	42.755	WBGene00001337	ears-1	94	42.191	Caenorhabditis_elegans
ENSCSAVG00000007760	-	100	65.932	ENSCJAG00000003967	EPRS	99	55.924	Callithrix_jacchus
ENSCSAVG00000007760	-	100	67.227	ENSCAFG00000010873	EPRS	99	59.426	Canis_familiaris
ENSCSAVG00000007760	-	100	67.227	ENSCAFG00020004097	EPRS	99	56.696	Canis_lupus_dingo
ENSCSAVG00000007760	-	100	66.498	ENSCHIG00000021232	EPRS	99	56.752	Capra_hircus
ENSCSAVG00000007760	-	100	66.780	ENSTSYG00000007633	EPRS	99	56.218	Carlito_syrichta
ENSCSAVG00000007760	-	100	65.825	ENSCAPG00000005713	EPRS	99	61.009	Cavia_aperea
ENSCSAVG00000007760	-	100	65.825	ENSCPOG00000003586	EPRS	99	61.231	Cavia_porcellus
ENSCSAVG00000007760	-	100	66.102	ENSCCAG00000028256	EPRS	98	58.187	Cebus_capucinus
ENSCSAVG00000007760	-	100	64.608	ENSCATG00000045050	EPRS	96	62.679	Cercocebus_atys
ENSCSAVG00000007760	-	100	64.452	ENSCLAG00000003851	EPRS	99	55.429	Chinchilla_lanigera
ENSCSAVG00000007760	-	100	66.271	ENSCSAG00000015776	EPRS	99	55.549	Chlorocebus_sabaeus
ENSCSAVG00000007760	-	87	85.965	ENSCHOG00000000140	EPRS	94	56.923	Choloepus_hoffmanni
ENSCSAVG00000007760	-	100	66.102	ENSCPBG00000001138	EPRS	97	70.975	Chrysemys_picta_bellii
ENSCSAVG00000007760	-	97	83.597	ENSCING00000007544	-	93	83.597	Ciona_intestinalis
ENSCSAVG00000007760	-	100	66.102	ENSCANG00000022575	EPRS	99	55.626	Colobus_angolensis_palliatus
ENSCSAVG00000007760	-	100	66.105	ENSCGRG00001009885	EPRS	99	56.505	Cricetulus_griseus_chok1gshd
ENSCSAVG00000007760	-	100	66.105	ENSCGRG00000010134	Eprs	99	56.505	Cricetulus_griseus_crigri
ENSCSAVG00000007760	-	100	66.610	ENSCSEG00000010266	eprs	99	56.226	Cynoglossus_semilaevis
ENSCSAVG00000007760	-	100	65.724	ENSCVAG00000005265	eprs	98	59.159	Cyprinodon_variegatus
ENSCSAVG00000007760	-	100	65.821	ENSDARG00000060494	eprs	99	58.573	Danio_rerio
ENSCSAVG00000007760	-	100	65.719	ENSDNOG00000004016	EPRS	99	55.886	Dasypus_novemcinctus
ENSCSAVG00000007760	-	100	67.797	ENSDORG00000004335	Eprs	97	76.220	Dipodomys_ordii
ENSCSAVG00000007760	-	100	60.811	FBgn0005674	GluProRS	98	55.168	Drosophila_melanogaster
ENSCSAVG00000007760	-	100	58.644	ENSETEG00000019858	EPRS	89	58.089	Echinops_telfairi
ENSCSAVG00000007760	-	100	66.271	ENSEASG00005003530	EPRS	99	56.923	Equus_asinus_asinus
ENSCSAVG00000007760	-	100	66.271	ENSECAG00000000700	EPRS	99	56.831	Equus_caballus
ENSCSAVG00000007760	-	100	66.330	ENSEEUG00000001019	EPRS	87	59.432	Erinaceus_europaeus
ENSCSAVG00000007760	-	100	66.159	ENSELUG00000019744	eprs	99	60.109	Esox_lucius
ENSCSAVG00000007760	-	100	66.498	ENSFCAG00000002590	EPRS	99	56.497	Felis_catus
ENSCSAVG00000007760	-	100	66.271	ENSFALG00000012160	EPRS	99	62.069	Ficedula_albicollis
ENSCSAVG00000007760	-	100	65.494	ENSFDAG00000021307	EPRS	99	55.704	Fukomys_damarensis
ENSCSAVG00000007760	-	100	67.174	ENSFHEG00000001390	eprs	99	58.445	Fundulus_heteroclitus
ENSCSAVG00000007760	-	86	71.901	ENSGMOG00000009984	eprs	93	71.901	Gadus_morhua
ENSCSAVG00000007760	-	100	66.949	ENSGALG00000009598	EPRS	99	65.517	Gallus_gallus
ENSCSAVG00000007760	-	100	64.576	ENSGAFG00000000716	eprs	99	55.381	Gambusia_affinis
ENSCSAVG00000007760	-	100	66.047	ENSGACG00000014823	eprs	99	59.336	Gasterosteus_aculeatus
ENSCSAVG00000007760	-	100	65.763	ENSGAGG00000017949	EPRS	98	64.474	Gopherus_agassizii
ENSCSAVG00000007760	-	100	66.441	ENSGGOG00000012404	EPRS	99	56.094	Gorilla_gorilla
ENSCSAVG00000007760	-	100	66.441	ENSHBUG00000019547	eprs	99	59.066	Haplochromis_burtoni
ENSCSAVG00000007760	-	100	65.767	ENSHGLG00000001974	EPRS	99	55.903	Heterocephalus_glaber_female
ENSCSAVG00000007760	-	100	65.767	ENSHGLG00100003853	EPRS	99	55.903	Heterocephalus_glaber_male
ENSCSAVG00000007760	-	100	65.651	ENSHCOG00000001640	eprs	99	63.875	Hippocampus_comes
ENSCSAVG00000007760	-	100	65.579	ENSIPUG00000023784	eprs	99	57.728	Ictalurus_punctatus
ENSCSAVG00000007760	-	100	66.723	ENSSTOG00000011870	EPRS	98	55.810	Ictidomys_tridecemlineatus
ENSCSAVG00000007760	-	99	65.837	ENSJJAG00000022291	Eprs	99	56.051	Jaculus_jaculus
ENSCSAVG00000007760	-	100	67.119	ENSKMAG00000001181	eprs	99	56.158	Kryptolebias_marmoratus
ENSCSAVG00000007760	-	100	67.905	ENSLBEG00000016168	eprs	96	65.147	Labrus_bergylta
ENSCSAVG00000007760	-	95	70.833	ENSLACG00000011773	EPRS	99	58.537	Latimeria_chalumnae
ENSCSAVG00000007760	-	100	66.441	ENSLAFG00000004981	EPRS	99	55.619	Loxodonta_africana
ENSCSAVG00000007760	-	100	66.271	ENSMFAG00000041902	EPRS	99	55.860	Macaca_fascicularis
ENSCSAVG00000007760	-	100	66.271	ENSMMUG00000008722	EPRS	99	55.796	Macaca_mulatta
ENSCSAVG00000007760	-	100	66.271	ENSMNEG00000023887	EPRS	99	55.796	Macaca_nemestrina
ENSCSAVG00000007760	-	100	63.926	ENSMLEG00000032585	EPRS	99	58.345	Mandrillus_leucophaeus
ENSCSAVG00000007760	-	100	67.061	ENSMAMG00000006099	eprs	99	59.178	Mastacembelus_armatus
ENSCSAVG00000007760	-	100	59.153	ENSMZEG00005004950	eprs	99	55.943	Maylandia_zebra
ENSCSAVG00000007760	-	99	66.209	ENSMGAG00000009215	EPRS	99	62.402	Meleagris_gallopavo
ENSCSAVG00000007760	-	99	66.214	ENSMAUG00000012512	Eprs	99	56.533	Mesocricetus_auratus
ENSCSAVG00000007760	-	100	66.667	ENSMICG00000038220	EPRS	99	56.020	Microcebus_murinus
ENSCSAVG00000007760	-	100	65.947	ENSMOCG00000012748	Eprs	99	56.569	Microtus_ochrogaster
ENSCSAVG00000007760	-	100	65.506	ENSMMOG00000015737	eprs	99	55.148	Mola_mola
ENSCSAVG00000007760	-	100	66.949	ENSMODG00000004398	EPRS	99	59.379	Monodelphis_domestica
ENSCSAVG00000007760	-	100	65.378	ENSMALG00000014670	eprs	99	56.091	Monopterus_albus
ENSCSAVG00000007760	-	100	66.271	MGP_CAROLIEiJ_G0015023	Eprs	99	56.597	Mus_caroli
ENSCSAVG00000007760	-	100	66.441	ENSMUSG00000026615	Eprs	99	56.469	Mus_musculus
ENSCSAVG00000007760	-	100	66.441	MGP_PahariEiJ_G0028255	Eprs	99	56.250	Mus_pahari
ENSCSAVG00000007760	-	100	66.610	MGP_SPRETEiJ_G0015823	Eprs	99	57.015	Mus_spretus
ENSCSAVG00000007760	-	100	66.497	ENSMPUG00000004156	EPRS	99	56.350	Mustela_putorius_furo
ENSCSAVG00000007760	-	100	65.593	ENSMLUG00000007253	-	99	55.106	Myotis_lucifugus
ENSCSAVG00000007760	-	100	67.227	ENSNGAG00000009088	Eprs	99	56.788	Nannospalax_galili
ENSCSAVG00000007760	-	100	60.339	ENSNBRG00000006007	eprs	99	53.886	Neolamprologus_brichardi
ENSCSAVG00000007760	-	100	66.271	ENSNLEG00000013988	EPRS	99	56.087	Nomascus_leucogenys
ENSCSAVG00000007760	-	91	63.636	ENSMEUG00000003870	EPRS	87	62.879	Notamacropus_eugenii
ENSCSAVG00000007760	-	83	71.294	ENSOPRG00000001503	EPRS	77	71.294	Ochotona_princeps
ENSCSAVG00000007760	-	100	63.744	ENSODEG00000014961	EPRS	99	55.022	Octodon_degus
ENSCSAVG00000007760	-	100	66.723	ENSONIG00000003054	eprs	99	58.791	Oreochromis_niloticus
ENSCSAVG00000007760	-	100	67.119	ENSOANG00000001424	-	99	59.701	Ornithorhynchus_anatinus
ENSCSAVG00000007760	-	100	67.174	ENSOCUG00000012039	EPRS	99	54.297	Oryctolagus_cuniculus
ENSCSAVG00000007760	-	100	65.174	ENSORLG00000014819	eprs	99	59.780	Oryzias_latipes
ENSCSAVG00000007760	-	100	65.232	ENSORLG00020018395	eprs	99	58.546	Oryzias_latipes_hni
ENSCSAVG00000007760	-	100	66.610	ENSORLG00015015996	eprs	99	58.199	Oryzias_latipes_hsok
ENSCSAVG00000007760	-	100	67.116	ENSOMEG00000018971	eprs	99	64.812	Oryzias_melastigma
ENSCSAVG00000007760	-	100	66.050	ENSOGAG00000005285	EPRS	99	56.172	Otolemur_garnettii
ENSCSAVG00000007760	-	100	66.330	ENSOARG00000011829	EPRS	99	56.624	Ovis_aries
ENSCSAVG00000007760	-	100	66.271	ENSPPAG00000036757	EPRS	99	55.967	Pan_paniscus
ENSCSAVG00000007760	-	100	66.330	ENSPPRG00000012626	EPRS	99	56.860	Panthera_pardus
ENSCSAVG00000007760	-	100	66.162	ENSPTIG00000012991	EPRS	99	56.597	Panthera_tigris_altaica
ENSCSAVG00000007760	-	100	66.271	ENSPTRG00000001995	EPRS	99	55.967	Pan_troglodytes
ENSCSAVG00000007760	-	100	65.932	ENSPANG00000004476	EPRS	99	55.676	Papio_anubis
ENSCSAVG00000007760	-	100	64.735	ENSPKIG00000023015	eprs	99	57.665	Paramormyrops_kingsleyae
ENSCSAVG00000007760	-	100	65.677	ENSPSIG00000010709	EPRS	99	59.808	Pelodiscus_sinensis
ENSCSAVG00000007760	-	100	63.345	ENSPMGG00000023169	eprs	99	55.106	Periophthalmus_magnuspinnatus
ENSCSAVG00000007760	-	99	64.957	ENSPEMG00000017287	Eprs	98	59.259	Peromyscus_maniculatus_bairdii
ENSCSAVG00000007760	-	53	66.038	ENSPMAG00000000137	-	99	67.732	Petromyzon_marinus
ENSCSAVG00000007760	-	100	66.610	ENSPCIG00000009736	EPRS	97	65.074	Phascolarctos_cinereus
ENSCSAVG00000007760	-	100	67.172	ENSPFOG00000017972	eprs	99	60.333	Poecilia_formosa
ENSCSAVG00000007760	-	52	64.000	ENSPLAG00000016198	EPRS	93	57.320	Poecilia_latipinna
ENSCSAVG00000007760	-	52	64.000	ENSPMEG00000001890	EPRS	93	57.248	Poecilia_mexicana
ENSCSAVG00000007760	-	100	67.627	ENSPMEG00000022964	eprs	99	60.331	Poecilia_mexicana
ENSCSAVG00000007760	-	100	67.736	ENSPREG00000004302	eprs	100	56.427	Poecilia_reticulata
ENSCSAVG00000007760	-	100	64.237	ENSPPYG00000000210	EPRS	98	64.580	Pongo_abelii
ENSCSAVG00000007760	-	89	69.716	ENSPCAG00000015737	EPRS	92	69.716	Procavia_capensis
ENSCSAVG00000007760	-	100	62.521	ENSPCOG00000004103	EPRS	99	55.374	Propithecus_coquereli
ENSCSAVG00000007760	-	100	65.821	ENSPVAG00000013147	EPRS	99	56.624	Pteropus_vampyrus
ENSCSAVG00000007760	-	100	66.441	ENSPNYG00000007931	eprs	99	58.929	Pundamilia_nyererei
ENSCSAVG00000007760	-	100	67.061	ENSPNAG00000003344	eprs	98	62.441	Pygocentrus_nattereri
ENSCSAVG00000007760	-	100	66.102	ENSRNOG00000002393	Eprs	99	56.250	Rattus_norvegicus
ENSCSAVG00000007760	-	100	66.271	ENSRBIG00000034767	EPRS	100	58.623	Rhinopithecus_bieti
ENSCSAVG00000007760	-	100	66.271	ENSRROG00000039885	EPRS	99	55.824	Rhinopithecus_roxellana
ENSCSAVG00000007760	-	100	65.932	ENSSBOG00000029926	EPRS	99	55.860	Saimiri_boliviensis_boliviensis
ENSCSAVG00000007760	-	90	59.191	ENSSHAG00000002391	EPRS	98	60.417	Sarcophilus_harrisii
ENSCSAVG00000007760	-	100	65.825	ENSSFOG00015007233	eprs	99	57.375	Scleropages_formosus
ENSCSAVG00000007760	-	100	66.105	ENSSMAG00000011150	eprs	99	57.866	Scophthalmus_maximus
ENSCSAVG00000007760	-	100	67.288	ENSSDUG00000008910	eprs	99	56.645	Seriola_dumerili
ENSCSAVG00000007760	-	100	67.288	ENSSLDG00000015153	eprs	99	64.773	Seriola_lalandi_dorsalis
ENSCSAVG00000007760	-	94	57.651	ENSSARG00000012244	EPRS	99	54.527	Sorex_araneus
ENSCSAVG00000007760	-	99	60.441	ENSSPUG00000009384	EPRS	97	56.897	Sphenodon_punctatus
ENSCSAVG00000007760	-	100	66.328	ENSSPAG00000010408	eprs	99	57.775	Stegastes_partitus
ENSCSAVG00000007760	-	100	66.441	ENSSSCG00000010821	EPRS	99	56.588	Sus_scrofa
ENSCSAVG00000007760	-	100	64.746	ENSTGUG00000002796	EPRS	100	56.186	Taeniopygia_guttata
ENSCSAVG00000007760	-	100	67.458	ENSTRUG00000006901	eprs	99	59.103	Takifugu_rubripes
ENSCSAVG00000007760	-	66	49.510	ENSTNIG00000011902	eprs	98	52.802	Tetraodon_nigroviridis
ENSCSAVG00000007760	-	100	66.555	ENSTBEG00000008365	EPRS	99	55.952	Tupaia_belangeri
ENSCSAVG00000007760	-	100	66.610	ENSTTRG00000013013	EPRS	99	55.605	Tursiops_truncatus
ENSCSAVG00000007760	-	100	66.836	ENSUAMG00000020817	EPRS	99	56.696	Ursus_americanus
ENSCSAVG00000007760	-	100	66.836	ENSUMAG00000020899	EPRS	99	63.480	Ursus_maritimus
ENSCSAVG00000007760	-	100	56.441	ENSVPAG00000008903	EPRS	95	60.345	Vicugna_pacos
ENSCSAVG00000007760	-	100	66.723	ENSVVUG00000012841	EPRS	76	56.314	Vulpes_vulpes
ENSCSAVG00000007760	-	100	65.313	ENSXETG00000002724	eprs	99	55.363	Xenopus_tropicalis
ENSCSAVG00000007760	-	100	67.119	ENSXCOG00000018038	eprs	98	59.615	Xiphophorus_couchianus
ENSCSAVG00000007760	-	100	67.288	ENSXMAG00000011690	eprs	99	59.972	Xiphophorus_maculatus