EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000007772 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 30212 bases
Position: chrreftig_2:1668209-1698420
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000013234	Upf2	PF04050.14	2.7e-22	1	1
ENSCSAVP00000013235	Upf2	PF04050.14	2.8e-22	1	1
ENSCSAVP00000013235	MIF4G	PF02854.19	1.6e-62	1	2
ENSCSAVP00000013235	MIF4G	PF02854.19	1.6e-62	2	2
ENSCSAVP00000013234	MIF4G	PF02854.19	1.5e-58	1	2
ENSCSAVP00000013234	MIF4G	PF02854.19	1.5e-58	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000013385	-	2988	-	ENSCSAVP00000013235	996 (aa)	-	H2Z6M3
ENSCSAVT00000013384	-	3191	-	ENSCSAVP00000013234	982 (aa)	-	H2Z6M2

Gene Model

Click here to download ENSCSAVG00000007772's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000007772's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000007772	-	79	50.446	ENSG00000151461	UPF2	79	48.963	Homo_sapiens
ENSCSAVG00000007772	-	78	48.705	ENSAPOG00000015837	UPF2	78	47.379	Acanthochromis_polyacanthus
ENSCSAVG00000007772	-	79	50.128	ENSAMEG00000004586	UPF2	79	48.865	Ailuropoda_melanoleuca
ENSCSAVG00000007772	-	99	48.924	ENSACIG00000018078	UPF2	79	50.049	Amphilophus_citrinellus
ENSCSAVG00000007772	-	99	48.814	ENSAOCG00000016766	UPF2	79	49.265	Amphiprion_ocellaris
ENSCSAVG00000007772	-	99	48.814	ENSAPEG00000019084	UPF2	79	49.265	Amphiprion_percula
ENSCSAVG00000007772	-	99	48.966	ENSATEG00000021677	UPF2	78	49.607	Anabas_testudineus
ENSCSAVG00000007772	-	99	47.911	ENSAPLG00000010287	UPF2	78	48.580	Anas_platyrhynchos
ENSCSAVG00000007772	-	99	48.583	ENSACAG00000009259	UPF2	79	49.066	Anolis_carolinensis
ENSCSAVG00000007772	-	79	47.429	ENSANAG00000028451	UPF2	79	46.779	Aotus_nancymaae
ENSCSAVG00000007772	-	99	48.826	ENSACLG00000012696	UPF2	79	49.951	Astatotilapia_calliptera
ENSCSAVG00000007772	-	99	48.569	ENSAMXG00000013700	UPF2	78	48.574	Astyanax_mexicanus
ENSCSAVG00000007772	-	79	50.446	ENSBTAG00000000288	UPF2	79	48.963	Bos_taurus
ENSCSAVG00000007772	-	79	50.191	ENSCJAG00000020685	UPF2	79	48.917	Callithrix_jacchus
ENSCSAVG00000007772	-	79	50.382	ENSCAFG00000004839	UPF2	79	48.963	Canis_familiaris
ENSCSAVG00000007772	-	91	52.444	ENSCAFG00020005882	UPF2	79	47.671	Canis_lupus_dingo
ENSCSAVG00000007772	-	79	50.446	ENSCHIG00000020359	UPF2	79	48.963	Capra_hircus
ENSCSAVG00000007772	-	99	47.255	ENSTSYG00000000935	UPF2	79	48.865	Carlito_syrichta
ENSCSAVG00000007772	-	79	45.641	ENSCAPG00000016658	UPF2	80	44.687	Cavia_aperea
ENSCSAVG00000007772	-	79	48.796	ENSCPOG00000008809	UPF2	79	47.835	Cavia_porcellus
ENSCSAVG00000007772	-	79	46.701	ENSCCAG00000035991	UPF2	79	45.919	Cebus_capucinus
ENSCSAVG00000007772	-	79	50.446	ENSCATG00000032679	UPF2	79	48.963	Cercocebus_atys
ENSCSAVG00000007772	-	79	50.127	ENSCLAG00000011434	UPF2	79	48.766	Chinchilla_lanigera
ENSCSAVG00000007772	-	79	50.446	ENSCSAG00000013372	UPF2	79	48.963	Chlorocebus_sabaeus
ENSCSAVG00000007772	-	72	64.194	ENSCHOG00000000422	UPF2	65	62.935	Choloepus_hoffmanni
ENSCSAVG00000007772	-	99	48.058	ENSCPBG00000027823	UPF2	80	48.869	Chrysemys_picta_bellii
ENSCSAVG00000007772	-	79	50.318	ENSCANG00000040396	UPF2	78	47.244	Colobus_angolensis_palliatus
ENSCSAVG00000007772	-	99	48.317	ENSCGRG00001019347	Upf2	79	49.312	Cricetulus_griseus_chok1gshd
ENSCSAVG00000007772	-	99	48.317	ENSCGRG00000017993	Upf2	79	49.312	Cricetulus_griseus_crigri
ENSCSAVG00000007772	-	78	49.612	ENSCSEG00000003520	UPF2	78	48.662	Cynoglossus_semilaevis
ENSCSAVG00000007772	-	99	48.283	ENSCVAG00000006167	UPF2	98	53.368	Cyprinodon_variegatus
ENSCSAVG00000007772	-	79	50.573	ENSDNOG00000018160	UPF2	79	48.766	Dasypus_novemcinctus
ENSCSAVG00000007772	-	79	50.382	ENSDORG00000002478	Upf2	79	48.974	Dipodomys_ordii
ENSCSAVG00000007772	-	88	34.621	FBgn0029992	Upf2	64	40.192	Drosophila_melanogaster
ENSCSAVG00000007772	-	65	48.654	ENSEBUG00000012448	-	69	48.177	Eptatretus_burgeri
ENSCSAVG00000007772	-	79	50.509	ENSEASG00005019274	UPF2	79	48.865	Equus_asinus_asinus
ENSCSAVG00000007772	-	79	50.509	ENSECAG00000017022	UPF2	79	48.865	Equus_caballus
ENSCSAVG00000007772	-	62	44.318	ENSEEUG00000007819	UPF2	60	41.469	Erinaceus_europaeus
ENSCSAVG00000007772	-	71	52.078	ENSELUG00000012014	UPF2	78	48.625	Esox_lucius
ENSCSAVG00000007772	-	99	47.610	ENSFCAG00000005785	UPF2	79	48.865	Felis_catus
ENSCSAVG00000007772	-	79	50.318	ENSFALG00000001889	UPF2	77	49.457	Ficedula_albicollis
ENSCSAVG00000007772	-	79	50.000	ENSFDAG00000014348	UPF2	79	48.970	Fukomys_damarensis
ENSCSAVG00000007772	-	99	48.035	ENSFHEG00000009826	UPF2	79	49.263	Fundulus_heteroclitus
ENSCSAVG00000007772	-	70	50.714	ENSGMOG00000005557	UPF2	78	49.022	Gadus_morhua
ENSCSAVG00000007772	-	79	50.513	ENSGALG00000033772	UPF2	79	49.360	Gallus_gallus
ENSCSAVG00000007772	-	99	48.381	ENSGAFG00000020867	UPF2	79	49.362	Gambusia_affinis
ENSCSAVG00000007772	-	99	47.911	ENSGACG00000001080	UPF2	79	48.728	Gasterosteus_aculeatus
ENSCSAVG00000007772	-	99	48.470	ENSGAGG00000002700	UPF2	79	48.869	Gopherus_agassizii
ENSCSAVG00000007772	-	79	50.446	ENSGGOG00000001479	UPF2	79	48.963	Gorilla_gorilla
ENSCSAVG00000007772	-	99	48.826	ENSHBUG00000004249	UPF2	79	49.852	Haplochromis_burtoni
ENSCSAVG00000007772	-	79	50.000	ENSHGLG00000015176	-	79	48.667	Heterocephalus_glaber_female
ENSCSAVG00000007772	-	78	42.857	ENSHGLG00000003822	-	79	43.071	Heterocephalus_glaber_female
ENSCSAVG00000007772	-	79	49.873	ENSHGLG00100010036	UPF2	80	48.871	Heterocephalus_glaber_male
ENSCSAVG00000007772	-	99	47.779	ENSHCOG00000004025	UPF2	78	48.137	Hippocampus_comes
ENSCSAVG00000007772	-	99	48.422	ENSIPUG00000015524	UPF2	78	48.479	Ictalurus_punctatus
ENSCSAVG00000007772	-	79	50.446	ENSSTOG00000013075	UPF2	79	49.264	Ictidomys_tridecemlineatus
ENSCSAVG00000007772	-	79	50.254	ENSJJAG00000004913	Upf2	79	49.264	Jaculus_jaculus
ENSCSAVG00000007772	-	99	48.272	ENSKMAG00000001071	UPF2	79	49.363	Kryptolebias_marmoratus
ENSCSAVG00000007772	-	99	49.311	ENSLBEG00000016394	-	78	49.213	Labrus_bergylta
ENSCSAVG00000007772	-	76	50.267	ENSLBEG00000000728	-	73	49.015	Labrus_bergylta
ENSCSAVG00000007772	-	99	42.718	ENSLACG00000015945	UPF2	79	43.359	Latimeria_chalumnae
ENSCSAVG00000007772	-	79	51.080	ENSLOCG00000015698	UPF2	79	49.312	Lepisosteus_oculatus
ENSCSAVG00000007772	-	79	50.446	ENSMFAG00000043865	UPF2	79	48.963	Macaca_fascicularis
ENSCSAVG00000007772	-	79	50.446	ENSMMUG00000008241	UPF2	79	48.963	Macaca_mulatta
ENSCSAVG00000007772	-	79	50.512	ENSMNEG00000008062	UPF2	73	52.646	Macaca_nemestrina
ENSCSAVG00000007772	-	79	50.446	ENSMLEG00000036120	UPF2	79	48.814	Mandrillus_leucophaeus
ENSCSAVG00000007772	-	99	49.507	ENSMAMG00000018276	UPF2	79	49.706	Mastacembelus_armatus
ENSCSAVG00000007772	-	99	48.826	ENSMZEG00005021595	UPF2	79	49.951	Maylandia_zebra
ENSCSAVG00000007772	-	79	50.193	ENSMGAG00000004573	UPF2	78	49.355	Meleagris_gallopavo
ENSCSAVG00000007772	-	99	46.238	ENSMAUG00000016512	Upf2	78	47.250	Mesocricetus_auratus
ENSCSAVG00000007772	-	91	52.878	ENSMICG00000001716	UPF2	78	48.024	Microcebus_murinus
ENSCSAVG00000007772	-	99	48.515	ENSMOCG00000008263	Upf2	79	49.409	Microtus_ochrogaster
ENSCSAVG00000007772	-	99	47.736	ENSMMOG00000006528	UPF2	78	48.130	Mola_mola
ENSCSAVG00000007772	-	79	50.701	ENSMODG00000016794	UPF2	79	49.311	Monodelphis_domestica
ENSCSAVG00000007772	-	100	46.339	ENSMALG00000002663	UPF2	78	48.917	Monopterus_albus
ENSCSAVG00000007772	-	99	48.119	MGP_CAROLIEiJ_G0023157	Upf2	99	49.625	Mus_caroli
ENSCSAVG00000007772	-	99	48.614	ENSMUSG00000043241	Upf2	99	49.053	Mus_musculus
ENSCSAVG00000007772	-	99	48.039	MGP_PahariEiJ_G0019217	Upf2	99	49.053	Mus_pahari
ENSCSAVG00000007772	-	99	48.614	MGP_SPRETEiJ_G0024075	Upf2	99	49.053	Mus_spretus
ENSCSAVG00000007772	-	79	50.318	ENSMPUG00000001064	UPF2	79	48.963	Mustela_putorius_furo
ENSCSAVG00000007772	-	99	48.327	ENSMLUG00000000228	UPF2	79	49.023	Myotis_lucifugus
ENSCSAVG00000007772	-	99	48.826	ENSNBRG00000013629	UPF2	79	49.852	Neolamprologus_brichardi
ENSCSAVG00000007772	-	79	50.573	ENSNLEG00000012058	UPF2	79	49.062	Nomascus_leucogenys
ENSCSAVG00000007772	-	84	58.451	ENSOPRG00000006801	-	67	58.451	Ochotona_princeps
ENSCSAVG00000007772	-	99	48.467	ENSODEG00000001290	UPF2	79	48.865	Octodon_degus
ENSCSAVG00000007772	-	99	48.826	ENSONIG00000017991	UPF2	79	49.951	Oreochromis_niloticus
ENSCSAVG00000007772	-	79	50.446	ENSOCUG00000006230	UPF2	79	48.963	Oryctolagus_cuniculus
ENSCSAVG00000007772	-	99	48.075	ENSORLG00000017189	UPF2	79	48.922	Oryzias_latipes
ENSCSAVG00000007772	-	99	48.075	ENSORLG00020005969	UPF2	79	48.922	Oryzias_latipes_hni
ENSCSAVG00000007772	-	99	48.075	ENSORLG00015005713	UPF2	79	48.922	Oryzias_latipes_hsok
ENSCSAVG00000007772	-	99	44.115	ENSOMEG00000023420	UPF2	76	45.597	Oryzias_melastigma
ENSCSAVG00000007772	-	79	50.448	ENSOGAG00000005796	UPF2	79	48.865	Otolemur_garnettii
ENSCSAVG00000007772	-	78	50.775	ENSOARG00000014587	UPF2	79	48.867	Ovis_aries
ENSCSAVG00000007772	-	79	49.809	ENSPPAG00000037953	UPF2	78	48.320	Pan_paniscus
ENSCSAVG00000007772	-	99	47.610	ENSPPRG00000000690	UPF2	79	48.865	Panthera_pardus
ENSCSAVG00000007772	-	99	47.610	ENSPTIG00000008867	UPF2	79	48.865	Panthera_tigris_altaica
ENSCSAVG00000007772	-	79	50.446	ENSPTRG00000002291	UPF2	79	48.963	Pan_troglodytes
ENSCSAVG00000007772	-	79	50.446	ENSPANG00000023399	UPF2	79	48.963	Papio_anubis
ENSCSAVG00000007772	-	99	48.323	ENSPKIG00000025502	UPF2	78	49.066	Paramormyrops_kingsleyae
ENSCSAVG00000007772	-	99	48.075	ENSPMGG00000005259	UPF2	79	48.917	Periophthalmus_magnuspinnatus
ENSCSAVG00000007772	-	87	52.326	ENSPEMG00000015731	Upf2	74	52.326	Peromyscus_maniculatus_bairdii
ENSCSAVG00000007772	-	79	50.701	ENSPCIG00000006656	UPF2	79	49.213	Phascolarctos_cinereus
ENSCSAVG00000007772	-	99	47.839	ENSPFOG00000017118	UPF2	79	49.066	Poecilia_formosa
ENSCSAVG00000007772	-	99	47.839	ENSPLAG00000005094	UPF2	79	49.066	Poecilia_latipinna
ENSCSAVG00000007772	-	99	47.446	ENSPMEG00000017009	UPF2	79	48.869	Poecilia_mexicana
ENSCSAVG00000007772	-	99	48.431	ENSPREG00000021880	UPF2	78	49.406	Poecilia_reticulata
ENSCSAVG00000007772	-	80	48.892	ENSPPYG00000002089	-	96	50.000	Pongo_abelii
ENSCSAVG00000007772	-	79	41.560	ENSPCAG00000000684	UPF2	78	41.986	Procavia_capensis
ENSCSAVG00000007772	-	99	43.633	ENSPVAG00000017286	UPF2	79	44.270	Pteropus_vampyrus
ENSCSAVG00000007772	-	99	46.673	ENSPNYG00000017096	UPF2	78	47.685	Pundamilia_nyererei
ENSCSAVG00000007772	-	99	47.088	ENSPNAG00000009357	UPF2	79	47.679	Pygocentrus_nattereri
ENSCSAVG00000007772	-	99	47.685	ENSRNOG00000023593	Upf2	99	55.017	Rattus_norvegicus
ENSCSAVG00000007772	-	79	50.446	ENSRBIG00000037780	UPF2	79	49.264	Rhinopithecus_bieti
ENSCSAVG00000007772	-	79	50.446	ENSRROG00000043547	UPF2	79	49.264	Rhinopithecus_roxellana
ENSCSAVG00000007772	-	79	50.191	ENSSBOG00000020012	UPF2	79	49.166	Saimiri_boliviensis_boliviensis
ENSCSAVG00000007772	-	99	48.982	ENSSFOG00015023788	upf2	79	49.709	Scleropages_formosus
ENSCSAVG00000007772	-	99	46.744	ENSSMAG00000007637	UPF2	78	48.123	Scophthalmus_maximus
ENSCSAVG00000007772	-	99	48.715	ENSSDUG00000017244	UPF2	78	49.609	Seriola_dumerili
ENSCSAVG00000007772	-	78	51.166	ENSSLDG00000016866	UPF2	78	49.308	Seriola_lalandi_dorsalis
ENSCSAVG00000007772	-	99	46.927	ENSSARG00000008615	UPF2	79	48.625	Sorex_araneus
ENSCSAVG00000007772	-	99	47.379	ENSSPUG00000014544	UPF2	78	47.788	Sphenodon_punctatus
ENSCSAVG00000007772	-	66	50.536	ENSSSCG00000011117	-	99	48.750	Sus_scrofa
ENSCSAVG00000007772	-	99	49.010	ENSTGUG00000002163	-	79	49.407	Taeniopygia_guttata
ENSCSAVG00000007772	-	99	47.941	ENSTRUG00000007519	UPF2	78	48.728	Takifugu_rubripes
ENSCSAVG00000007772	-	99	48.780	ENSTNIG00000004453	UPF2	81	48.188	Tetraodon_nigroviridis
ENSCSAVG00000007772	-	79	42.857	ENSTBEG00000012679	UPF2	71	42.888	Tupaia_belangeri
ENSCSAVG00000007772	-	79	50.127	ENSTTRG00000016388	UPF2	79	48.766	Tursiops_truncatus
ENSCSAVG00000007772	-	88	52.450	ENSUAMG00000023560	UPF2	75	52.809	Ursus_americanus
ENSCSAVG00000007772	-	79	50.318	ENSUMAG00000012953	UPF2	75	48.963	Ursus_maritimus
ENSCSAVG00000007772	-	78	79.310	ENSVPAG00000006763	UPF2	64	79.310	Vicugna_pacos
ENSCSAVG00000007772	-	79	50.382	ENSVVUG00000006166	UPF2	79	48.963	Vulpes_vulpes
ENSCSAVG00000007772	-	99	49.604	ENSXETG00000033103	UPF2	79	49.753	Xenopus_tropicalis
ENSCSAVG00000007772	-	99	48.381	ENSXCOG00000011604	UPF2	79	49.263	Xiphophorus_couchianus
ENSCSAVG00000007772	-	99	48.134	ENSXMAG00000017209	UPF2	79	49.361	Xiphophorus_maculatus