EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000007809 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 4758 bases
Position: chrreftig_30:2268881-2273638
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000013306	RRM_1	PF00076.22	1.2e-28	1	2
ENSCSAVP00000013306	RRM_1	PF00076.22	1.2e-28	2	2
ENSCSAVP00000013305	RRM_1	PF00076.22	1.3e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000013456	-	662	-	ENSCSAVP00000013306	188 (aa)	-	H2Z6U4
ENSCSAVT00000013455	-	1337	-	ENSCSAVP00000013305	301 (aa)	-	H2Z6U3

Gene Model

Click here to download ENSCSAVG00000007809's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000007809's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000007809	-	81	36.129	ENSCSAVG00000004246	-	63	37.398
ENSCSAVG00000007809	-	73	33.566	ENSCSAVG00000009321	-	50	33.566
ENSCSAVG00000007809	-	81	37.419	ENSCSAVG00000003102	-	99	41.667
ENSCSAVG00000007809	-	68	30.370	ENSCSAVG00000011781	-	73	30.000
ENSCSAVG00000007809	-	72	31.915	ENSCSAVG00000000472	-	77	31.915
ENSCSAVG00000007809	-	97	33.750	ENSCSAVG00000003440	-	94	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000007809	-	88	89.697	ENSG00000143368	SF3B4	88	89.881	Homo_sapiens
ENSCSAVG00000007809	-	88	89.697	ENSAPOG00000017647	sf3b4	52	91.429	Acanthochromis_polyacanthus
ENSCSAVG00000007809	-	89	89.222	ENSACIG00000018455	sf3b4	60	91.429	Amphilophus_citrinellus
ENSCSAVG00000007809	-	88	89.697	ENSAOCG00000019801	sf3b4	52	91.429	Amphiprion_ocellaris
ENSCSAVG00000007809	-	88	89.697	ENSAPEG00000010365	sf3b4	52	91.429	Amphiprion_percula
ENSCSAVG00000007809	-	88	89.697	ENSATEG00000012844	sf3b4	52	91.429	Anabas_testudineus
ENSCSAVG00000007809	-	89	89.881	ENSACAG00000010019	SF3B4	50	91.429	Anolis_carolinensis
ENSCSAVG00000007809	-	89	89.820	ENSACLG00000014260	sf3b4	52	91.429	Astatotilapia_calliptera
ENSCSAVG00000007809	-	89	89.820	ENSAMXG00000008282	sf3b4	52	91.429	Astyanax_mexicanus
ENSCSAVG00000007809	-	97	74.317	WBGene00004723	sap-49	54	79.286	Caenorhabditis_elegans
ENSCSAVG00000007809	-	89	89.881	ENSCPBG00000008041	SF3B4	50	91.429	Chrysemys_picta_bellii
ENSCSAVG00000007809	-	92	98.266	ENSCING00000002337	-	95	80.743	Ciona_intestinalis
ENSCSAVG00000007809	-	91	89.474	ENSCVAG00000005536	sf3b4	57	86.184	Cyprinodon_variegatus
ENSCSAVG00000007809	-	89	89.881	ENSDARG00000018574	sf3b4	52	91.429	Danio_rerio
ENSCSAVG00000007809	-	90	84.615	FBgn0015818	Spx	61	84.028	Drosophila_melanogaster
ENSCSAVG00000007809	-	88	89.697	ENSELUG00000012876	sf3b4	52	91.429	Esox_lucius
ENSCSAVG00000007809	-	88	89.091	ENSGMOG00000002519	sf3b4	61	90.714	Gadus_morhua
ENSCSAVG00000007809	-	89	89.881	ENSGALG00000013352	SF3B4	50	91.429	Gallus_gallus
ENSCSAVG00000007809	-	88	89.697	ENSGAFG00000010181	sf3b4	53	91.429	Gambusia_affinis
ENSCSAVG00000007809	-	88	89.697	ENSGACG00000003819	sf3b4	53	91.429	Gasterosteus_aculeatus
ENSCSAVG00000007809	-	89	89.820	ENSHBUG00000002028	sf3b4	52	91.429	Haplochromis_burtoni
ENSCSAVG00000007809	-	89	89.222	ENSHCOG00000003014	sf3b4	52	89.286	Hippocampus_comes
ENSCSAVG00000007809	-	88	89.697	ENSIPUG00000012242	Sf3b4	55	91.429	Ictalurus_punctatus
ENSCSAVG00000007809	-	88	89.697	ENSKMAG00000008154	sf3b4	53	91.429	Kryptolebias_marmoratus
ENSCSAVG00000007809	-	88	89.697	ENSLBEG00000026818	sf3b4	52	91.429	Labrus_bergylta
ENSCSAVG00000007809	-	95	86.592	ENSLACG00000004436	SF3B4	57	90.714	Latimeria_chalumnae
ENSCSAVG00000007809	-	89	89.820	ENSMAMG00000014692	sf3b4	52	91.429	Mastacembelus_armatus
ENSCSAVG00000007809	-	89	89.820	ENSMZEG00005026741	sf3b4	52	91.429	Maylandia_zebra
ENSCSAVG00000007809	-	89	89.881	ENSMGAG00000000653	SF3B4	50	91.429	Meleagris_gallopavo
ENSCSAVG00000007809	-	89	87.500	ENSMOCG00000014155	-	50	88.571	Microtus_ochrogaster
ENSCSAVG00000007809	-	89	89.881	ENSMMOG00000018032	sf3b4	53	91.429	Mola_mola
ENSCSAVG00000007809	-	89	89.820	ENSMALG00000006174	sf3b4	52	91.429	Monopterus_albus
ENSCSAVG00000007809	-	88	89.697	ENSNBRG00000013865	sf3b4	52	91.429	Neolamprologus_brichardi
ENSCSAVG00000007809	-	94	79.188	ENSONIG00000002730	sf3b4	52	91.429	Oreochromis_niloticus
ENSCSAVG00000007809	-	82	57.419	ENSOANG00000020581	-	98	57.419	Ornithorhynchus_anatinus
ENSCSAVG00000007809	-	89	89.881	ENSORLG00000003062	sf3b4	54	91.429	Oryzias_latipes
ENSCSAVG00000007809	-	89	89.881	ENSORLG00020000687	sf3b4	52	91.429	Oryzias_latipes_hni
ENSCSAVG00000007809	-	89	89.881	ENSORLG00015010989	sf3b4	52	91.429	Oryzias_latipes_hsok
ENSCSAVG00000007809	-	89	89.881	ENSOMEG00000013694	sf3b4	52	91.429	Oryzias_melastigma
ENSCSAVG00000007809	-	95	70.225	ENSOARG00000007368	-	50	74.820	Ovis_aries
ENSCSAVG00000007809	-	88	89.697	ENSPKIG00000020669	sf3b4	55	91.429	Paramormyrops_kingsleyae
ENSCSAVG00000007809	-	89	89.881	ENSPSIG00000009565	SF3B4	62	89.881	Pelodiscus_sinensis
ENSCSAVG00000007809	-	57	63.415	ENSPMGG00000023148	-	93	51.923	Periophthalmus_magnuspinnatus
ENSCSAVG00000007809	-	89	89.820	ENSPFOG00000005754	sf3b4	53	91.429	Poecilia_formosa
ENSCSAVG00000007809	-	89	89.820	ENSPLAG00000001401	sf3b4	57	91.429	Poecilia_latipinna
ENSCSAVG00000007809	-	88	89.697	ENSPREG00000011076	sf3b4	52	91.429	Poecilia_reticulata
ENSCSAVG00000007809	-	89	89.820	ENSPNYG00000012700	sf3b4	52	91.429	Pundamilia_nyererei
ENSCSAVG00000007809	-	89	89.820	ENSPNAG00000000686	sf3b4	53	91.429	Pygocentrus_nattereri
ENSCSAVG00000007809	-	79	33.951	YOR319W	-	75	33.951	Saccharomyces_cerevisiae
ENSCSAVG00000007809	-	88	89.697	ENSSFOG00015008864	sf3b4	51	91.429	Scleropages_formosus
ENSCSAVG00000007809	-	88	89.697	ENSSMAG00000006837	sf3b4	52	91.429	Scophthalmus_maximus
ENSCSAVG00000007809	-	88	89.697	ENSSDUG00000012064	sf3b4	52	91.429	Seriola_dumerili
ENSCSAVG00000007809	-	88	89.697	ENSSLDG00000014226	sf3b4	52	91.429	Seriola_lalandi_dorsalis
ENSCSAVG00000007809	-	89	89.881	ENSSPUG00000001028	SF3B4	52	91.429	Sphenodon_punctatus
ENSCSAVG00000007809	-	88	89.697	ENSSPAG00000019219	sf3b4	52	91.429	Stegastes_partitus
ENSCSAVG00000007809	-	88	89.697	ENSTGUG00000004470	SF3B4	82	91.429	Taeniopygia_guttata
ENSCSAVG00000007809	-	91	89.474	ENSTRUG00000004516	sf3b4	52	89.881	Takifugu_rubripes
ENSCSAVG00000007809	-	88	89.697	ENSTNIG00000009156	sf3b4	53	91.429	Tetraodon_nigroviridis
ENSCSAVG00000007809	-	88	89.697	ENSVVUG00000007732	-	53	91.429	Vulpes_vulpes
ENSCSAVG00000007809	-	89	89.820	ENSXETG00000011038	sf3b4	54	91.429	Xenopus_tropicalis
ENSCSAVG00000007809	-	88	89.697	ENSXCOG00000019895	sf3b4	53	91.429	Xiphophorus_couchianus
ENSCSAVG00000007809	-	88	89.697	ENSXMAG00000003772	sf3b4	53	91.429	Xiphophorus_maculatus