EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000007812 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 5201 bases
Position: chrreftig_13:2272482-2277682
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000013309	PseudoU_synth_2	PF00849.22	1.5e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000013459	-	1114	-	ENSCSAVP00000013309	293 (aa)	-	H2Z6U7

Gene Model

Click here to download ENSCSAVG00000007812's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000007812's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000007812	-	73	45.652	ENSCSAVG00000007814	-	53	45.652

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000007812	-	69	47.549	ENSAPLG00000004723	RPUSD2	52	46.759	Anas_platyrhynchos
ENSCSAVG00000007812	-	99	30.841	WBGene00019498	K07E8.7	84	30.841	Caenorhabditis_elegans
ENSCSAVG00000007812	-	63	48.387	ENSCAPG00000006895	-	64	48.387	Cavia_aperea
ENSCSAVG00000007812	-	74	44.495	ENSDORG00000009092	Rpusd2	50	44.495	Dipodomys_ordii
ENSCSAVG00000007812	-	99	30.252	ENSEBUG00000012149	rpusd2	71	30.252	Eptatretus_burgeri
ENSCSAVG00000007812	-	92	39.146	ENSELUG00000016786	rpusd2	50	39.146	Esox_lucius
ENSCSAVG00000007812	-	85	40.637	ENSGMOG00000011014	rpusd2	51	40.637	Gadus_morhua
ENSCSAVG00000007812	-	99	35.756	ENSGAFG00000003390	rpusd2	63	35.756	Gambusia_affinis
ENSCSAVG00000007812	-	84	41.339	ENSLOCG00000014755	rpusd2	51	41.339	Lepisosteus_oculatus
ENSCSAVG00000007812	-	99	34.278	ENSMODG00000000300	RPUSD2	65	34.278	Monodelphis_domestica
ENSCSAVG00000007812	-	99	34.091	ENSNGAG00000014126	Rpusd2	64	34.091	Nannospalax_galili
ENSCSAVG00000007812	-	72	44.340	ENSOANG00000011262	-	82	44.340	Ornithorhynchus_anatinus
ENSCSAVG00000007812	-	99	34.270	ENSOCUG00000015745	RPUSD2	63	34.270	Oryctolagus_cuniculus
ENSCSAVG00000007812	-	99	33.898	ENSOARG00000020235	RPUSD2	65	33.898	Ovis_aries
ENSCSAVG00000007812	-	67	48.485	ENSPSIG00000012680	RPUSD2	55	48.485	Pelodiscus_sinensis
ENSCSAVG00000007812	-	99	38.762	ENSPMGG00000018165	rpusd2	60	38.762	Periophthalmus_magnuspinnatus
ENSCSAVG00000007812	-	99	36.858	ENSPCIG00000023199	RPUSD2	63	36.858	Phascolarctos_cinereus
ENSCSAVG00000007812	-	99	35.632	ENSPFOG00000006829	rpusd2	63	35.632	Poecilia_formosa
ENSCSAVG00000007812	-	99	35.632	ENSPLAG00000022914	rpusd2	72	35.632	Poecilia_latipinna
ENSCSAVG00000007812	-	99	35.345	ENSPMEG00000009835	rpusd2	72	35.345	Poecilia_mexicana
ENSCSAVG00000007812	-	99	35.920	ENSPREG00000016441	rpusd2	61	35.920	Poecilia_reticulata
ENSCSAVG00000007812	-	99	35.072	ENSPNYG00000021507	rpusd2	69	35.072	Pundamilia_nyererei
ENSCSAVG00000007812	-	99	33.807	ENSRNOG00000010528	LOC100911166	63	33.807	Rattus_norvegicus
ENSCSAVG00000007812	-	99	33.807	ENSRNOG00000046797	Rpusd2	63	33.807	Rattus_norvegicus
ENSCSAVG00000007812	-	88	38.095	YDL036C	-	59	38.182	Saccharomyces_cerevisiae
ENSCSAVG00000007812	-	99	35.806	YOL066C	RIB2	52	35.806	Saccharomyces_cerevisiae
ENSCSAVG00000007812	-	90	40.824	ENSTRUG00000025880	rpusd2	50	40.824	Takifugu_rubripes
ENSCSAVG00000007812	-	90	41.199	ENSTNIG00000017329	rpusd2	53	41.199	Tetraodon_nigroviridis
ENSCSAVG00000007812	-	85	41.176	ENSXETG00000015973	rpusd2	54	41.176	Xenopus_tropicalis
ENSCSAVG00000007812	-	99	36.919	ENSXMAG00000021821	rpusd2	72	36.919	Xiphophorus_maculatus