EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000007923 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 18080 bases
Position: chrreftig_49:793803-811882
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000013511	Tho2	PF11262.8	3.5e-105	1	1
ENSCSAVP00000013512	Thoc2	PF11732.8	2e-36	1	1
ENSCSAVP00000013511	Thoc2	PF11732.8	2.1e-35	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000013668	-	891	-	ENSCSAVP00000013512	188 (aa)	-	H2Z7F0
ENSCSAVT00000013667	-	2979	-	ENSCSAVP00000013511	993 (aa)	-	H2Z7E9

Gene Model

Click here to download ENSCSAVG00000007923's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000007923's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000007923	-	99	76.882	ENSG00000125676	THOC2	75	62.937	Homo_sapiens
ENSCSAVG00000007923	-	100	74.468	ENSAPOG00000003459	thoc2	73	56.444	Acanthochromis_polyacanthus
ENSCSAVG00000007923	-	99	75.269	ENSAMEG00000014841	THOC2	62	58.030	Ailuropoda_melanoleuca
ENSCSAVG00000007923	-	100	69.681	ENSACIG00000015022	thoc2	73	55.544	Amphilophus_citrinellus
ENSCSAVG00000007923	-	100	74.468	ENSAOCG00000013305	thoc2	70	56.643	Amphiprion_ocellaris
ENSCSAVG00000007923	-	100	74.468	ENSAPEG00000004792	thoc2	69	56.543	Amphiprion_percula
ENSCSAVG00000007923	-	100	74.468	ENSATEG00000013110	thoc2	64	57.243	Anabas_testudineus
ENSCSAVG00000007923	-	99	77.419	ENSAPLG00000010614	THOC2	65	60.100	Anas_platyrhynchos
ENSCSAVG00000007923	-	100	76.064	ENSACAG00000011585	THOC2	62	59.300	Anolis_carolinensis
ENSCSAVG00000007923	-	100	76.064	ENSANAG00000034037	-	70	57.058	Aotus_nancymaae
ENSCSAVG00000007923	-	100	73.936	ENSANAG00000022505	-	69	57.525	Aotus_nancymaae
ENSCSAVG00000007923	-	100	73.936	ENSACLG00000012036	thoc2	68	56.886	Astatotilapia_calliptera
ENSCSAVG00000007923	-	100	74.468	ENSAMXG00000014184	thoc2	66	58.016	Astyanax_mexicanus
ENSCSAVG00000007923	-	99	76.344	ENSBTAG00000008388	THOC2	62	58.185	Bos_taurus
ENSCSAVG00000007923	-	100	75.000	ENSBTAG00000047341	-	63	57.594	Bos_taurus
ENSCSAVG00000007923	-	96	47.222	WBGene00015813	thoc-2	69	35.957	Caenorhabditis_elegans
ENSCSAVG00000007923	-	100	76.064	ENSCJAG00000016157	THOC2	70	59.481	Callithrix_jacchus
ENSCSAVG00000007923	-	100	76.064	ENSCAFG00000018574	THOC2	66	58.847	Canis_familiaris
ENSCSAVG00000007923	-	100	76.064	ENSCAFG00020002284	THOC2	68	58.325	Canis_lupus_dingo
ENSCSAVG00000007923	-	100	73.936	ENSCHIG00000025851	-	63	59.300	Capra_hircus
ENSCSAVG00000007923	-	99	76.344	ENSCHIG00000017733	-	62	58.185	Capra_hircus
ENSCSAVG00000007923	-	100	76.064	ENSTSYG00000012292	THOC2	64	58.325	Carlito_syrichta
ENSCSAVG00000007923	-	100	76.064	ENSCPOG00000038670	THOC2	62	56.663	Cavia_porcellus
ENSCSAVG00000007923	-	100	76.064	ENSCCAG00000021906	THOC2	63	58.284	Cebus_capucinus
ENSCSAVG00000007923	-	99	76.882	ENSCATG00000003183	THOC2	63	57.869	Cercocebus_atys
ENSCSAVG00000007923	-	100	76.064	ENSCLAG00000002641	THOC2	66	59.681	Chinchilla_lanigera
ENSCSAVG00000007923	-	99	76.882	ENSCSAG00000018332	THOC2	62	58.325	Chlorocebus_sabaeus
ENSCSAVG00000007923	-	100	76.596	ENSCPBG00000012863	THOC2	79	59.033	Chrysemys_picta_bellii
ENSCSAVG00000007923	-	100	96.277	ENSCING00000007364	-	83	88.800	Ciona_intestinalis
ENSCSAVG00000007923	-	100	76.064	ENSCANG00000035077	THOC2	63	58.325	Colobus_angolensis_palliatus
ENSCSAVG00000007923	-	100	76.596	ENSCGRG00001009811	BC005561	62	59.880	Cricetulus_griseus_chok1gshd
ENSCSAVG00000007923	-	100	76.596	ENSCGRG00001015509	Thoc2	62	58.325	Cricetulus_griseus_chok1gshd
ENSCSAVG00000007923	-	99	76.471	ENSCGRG00000001226	Thoc2	63	55.961	Cricetulus_griseus_crigri
ENSCSAVG00000007923	-	100	76.596	ENSCGRG00000000980	BC005561	62	59.880	Cricetulus_griseus_crigri
ENSCSAVG00000007923	-	100	73.936	ENSCSEG00000019946	thoc2	74	57.271	Cynoglossus_semilaevis
ENSCSAVG00000007923	-	100	71.277	ENSCVAG00000021509	thoc2	65	55.589	Cyprinodon_variegatus
ENSCSAVG00000007923	-	100	74.468	ENSDARG00000037503	thoc2	65	58.583	Danio_rerio
ENSCSAVG00000007923	-	100	74.479	ENSDNOG00000012487	THOC2	62	58.194	Dasypus_novemcinctus
ENSCSAVG00000007923	-	100	58.511	FBgn0031390	tho2	61	47.976	Drosophila_melanogaster
ENSCSAVG00000007923	-	100	52.144	ENSETEG00000016183	THOC2	60	63.344	Echinops_telfairi
ENSCSAVG00000007923	-	100	76.064	ENSEASG00005017399	THOC2	66	58.325	Equus_asinus_asinus
ENSCSAVG00000007923	-	100	76.064	ENSECAG00000010431	THOC2	70	58.018	Equus_caballus
ENSCSAVG00000007923	-	75	61.859	ENSEEUG00000015598	THOC2	50	61.859	Erinaceus_europaeus
ENSCSAVG00000007923	-	100	73.936	ENSELUG00000007778	thoc2	69	56.591	Esox_lucius
ENSCSAVG00000007923	-	100	76.064	ENSFCAG00000008301	THOC2	62	58.325	Felis_catus
ENSCSAVG00000007923	-	100	67.290	ENSFALG00000001519	THOC2	63	58.480	Ficedula_albicollis
ENSCSAVG00000007923	-	100	76.064	ENSFDAG00000017237	THOC2	67	58.227	Fukomys_damarensis
ENSCSAVG00000007923	-	100	73.404	ENSFHEG00000001695	thoc2	69	56.387	Fundulus_heteroclitus
ENSCSAVG00000007923	-	100	73.936	ENSGMOG00000000069	thoc2	66	57.487	Gadus_morhua
ENSCSAVG00000007923	-	100	76.064	ENSGALG00000008507	THOC2	67	60.200	Gallus_gallus
ENSCSAVG00000007923	-	100	71.277	ENSGAFG00000005902	thoc2	65	55.633	Gambusia_affinis
ENSCSAVG00000007923	-	100	74.468	ENSGACG00000020367	thoc2	65	56.643	Gasterosteus_aculeatus
ENSCSAVG00000007923	-	99	77.957	ENSGAGG00000024263	THOC2	64	59.681	Gopherus_agassizii
ENSCSAVG00000007923	-	100	76.064	ENSGGOG00000000486	THOC2	63	58.325	Gorilla_gorilla
ENSCSAVG00000007923	-	100	75.532	ENSHBUG00000003516	thoc2	68	57.585	Haplochromis_burtoni
ENSCSAVG00000007923	-	100	76.064	ENSHGLG00000004222	THOC2	62	59.681	Heterocephalus_glaber_female
ENSCSAVG00000007923	-	100	76.064	ENSHGLG00100011595	THOC2	63	59.780	Heterocephalus_glaber_male
ENSCSAVG00000007923	-	100	73.404	ENSHCOG00000006276	thoc2	65	56.444	Hippocampus_comes
ENSCSAVG00000007923	-	100	74.468	ENSIPUG00000015876	thoc2	72	58.717	Ictalurus_punctatus
ENSCSAVG00000007923	-	100	75.532	ENSSTOG00000009134	THOC2	62	58.325	Ictidomys_tridecemlineatus
ENSCSAVG00000007923	-	100	77.128	ENSJJAG00000017282	Thoc2	62	58.916	Jaculus_jaculus
ENSCSAVG00000007923	-	99	76.344	ENSJJAG00000008784	BC005561	62	57.833	Jaculus_jaculus
ENSCSAVG00000007923	-	100	74.468	ENSKMAG00000012263	thoc2	72	56.843	Kryptolebias_marmoratus
ENSCSAVG00000007923	-	100	74.468	ENSLBEG00000003049	thoc2	70	56.466	Labrus_bergylta
ENSCSAVG00000007923	-	100	77.660	ENSLACG00000016494	THOC2	65	58.777	Latimeria_chalumnae
ENSCSAVG00000007923	-	100	75.000	ENSLOCG00000014546	thoc2	63	59.441	Lepisosteus_oculatus
ENSCSAVG00000007923	-	100	76.064	ENSLAFG00000003146	THOC2	62	58.325	Loxodonta_africana
ENSCSAVG00000007923	-	99	76.882	ENSMFAG00000042215	THOC2	63	57.869	Macaca_fascicularis
ENSCSAVG00000007923	-	100	76.064	ENSMMUG00000003745	THOC2	67	58.325	Macaca_mulatta
ENSCSAVG00000007923	-	99	76.882	ENSMNEG00000033627	THOC2	63	57.869	Macaca_nemestrina
ENSCSAVG00000007923	-	100	76.064	ENSMLEG00000034817	THOC2	64	58.325	Mandrillus_leucophaeus
ENSCSAVG00000007923	-	100	74.468	ENSMAMG00000012993	thoc2	70	56.943	Mastacembelus_armatus
ENSCSAVG00000007923	-	100	75.532	ENSMZEG00005015842	thoc2	63	57.585	Maylandia_zebra
ENSCSAVG00000007923	-	99	76.882	ENSMGAG00000007345	THOC2	63	60.140	Meleagris_gallopavo
ENSCSAVG00000007923	-	100	76.596	ENSMAUG00000002356	Thoc2	62	58.325	Mesocricetus_auratus
ENSCSAVG00000007923	-	100	76.064	ENSMICG00000011840	THOC2	62	58.563	Microcebus_murinus
ENSCSAVG00000007923	-	100	76.596	ENSMOCG00000009946	Thoc2	64	58.128	Microtus_ochrogaster
ENSCSAVG00000007923	-	100	76.596	ENSMOCG00000019406	BC005561	62	59.581	Microtus_ochrogaster
ENSCSAVG00000007923	-	100	74.468	ENSMMOG00000016313	thoc2	73	57.143	Mola_mola
ENSCSAVG00000007923	-	99	77.957	ENSMODG00000014984	THOC2	62	59.113	Monodelphis_domestica
ENSCSAVG00000007923	-	100	68.421	ENSMALG00000019718	thoc2	69	54.865	Monopterus_albus
ENSCSAVG00000007923	-	100	76.596	MGP_CAROLIEiJ_G0027482	BC005561	62	59.681	Mus_caroli
ENSCSAVG00000007923	-	99	76.882	MGP_CAROLIEiJ_G0033023	Thoc2	62	58.325	Mus_caroli
ENSCSAVG00000007923	-	100	76.064	ENSMUSG00000037475	Thoc2	62	58.325	Mus_musculus
ENSCSAVG00000007923	-	100	76.064	ENSMUSG00000079065	BC005561	62	58.284	Mus_musculus
ENSCSAVG00000007923	-	100	76.064	MGP_PahariEiJ_G0017260	BC005561	62	58.185	Mus_pahari
ENSCSAVG00000007923	-	100	76.064	MGP_PahariEiJ_G0031569	Thoc2	62	58.325	Mus_pahari
ENSCSAVG00000007923	-	100	76.064	MGP_SPRETEiJ_G0028479	BC005561	62	58.284	Mus_spretus
ENSCSAVG00000007923	-	100	76.064	MGP_SPRETEiJ_G0034181	Thoc2	62	58.325	Mus_spretus
ENSCSAVG00000007923	-	100	76.064	ENSMPUG00000001357	THOC2	62	57.869	Mustela_putorius_furo
ENSCSAVG00000007923	-	100	72.340	ENSMLUG00000026072	-	67	56.587	Myotis_lucifugus
ENSCSAVG00000007923	-	99	75.263	ENSMLUG00000013656	-	63	57.998	Myotis_lucifugus
ENSCSAVG00000007923	-	99	65.591	ENSMLUG00000028256	-	67	54.382	Myotis_lucifugus
ENSCSAVG00000007923	-	88	64.855	ENSMLUG00000027559	-	60	64.855	Myotis_lucifugus
ENSCSAVG00000007923	-	100	76.596	ENSNGAG00000016184	Thoc2	62	58.621	Nannospalax_galili
ENSCSAVG00000007923	-	100	76.064	ENSNGAG00000010936	BC005561	62	58.498	Nannospalax_galili
ENSCSAVG00000007923	-	100	75.532	ENSNBRG00000018089	thoc2	71	56.786	Neolamprologus_brichardi
ENSCSAVG00000007923	-	94	70.950	ENSNLEG00000015055	THOC2	61	56.375	Nomascus_leucogenys
ENSCSAVG00000007923	-	76	67.293	ENSMEUG00000003533	THOC2	50	66.788	Notamacropus_eugenii
ENSCSAVG00000007923	-	100	76.064	ENSODEG00000002478	THOC2	62	58.383	Octodon_degus
ENSCSAVG00000007923	-	100	75.532	ENSONIG00000004348	thoc2	63	57.585	Oreochromis_niloticus
ENSCSAVG00000007923	-	100	76.596	ENSOANG00000004054	THOC2	64	58.325	Ornithorhynchus_anatinus
ENSCSAVG00000007923	-	100	76.596	ENSOCUG00000005996	THOC2	62	58.325	Oryctolagus_cuniculus
ENSCSAVG00000007923	-	100	73.404	ENSORLG00000008692	thoc2	63	57.200	Oryzias_latipes
ENSCSAVG00000007923	-	100	73.404	ENSORLG00020002321	thoc2	72	57.100	Oryzias_latipes_hni
ENSCSAVG00000007923	-	100	73.404	ENSORLG00015000665	thoc2	73	57.100	Oryzias_latipes_hsok
ENSCSAVG00000007923	-	100	73.936	ENSOMEG00000004006	thoc2	63	57.300	Oryzias_melastigma
ENSCSAVG00000007923	-	100	76.064	ENSOGAG00000000302	THOC2	62	58.383	Otolemur_garnettii
ENSCSAVG00000007923	-	100	73.936	ENSOARG00000003614	-	52	80.000	Ovis_aries
ENSCSAVG00000007923	-	99	76.344	ENSOARG00000013665	-	63	58.185	Ovis_aries
ENSCSAVG00000007923	-	100	76.064	ENSPPAG00000040720	THOC2	71	58.424	Pan_paniscus
ENSCSAVG00000007923	-	99	76.882	ENSPPRG00000023137	THOC2	62	58.325	Panthera_pardus
ENSCSAVG00000007923	-	100	75.532	ENSPTIG00000006983	THOC2	62	58.227	Panthera_tigris_altaica
ENSCSAVG00000007923	-	100	76.064	ENSPTRG00000022246	THOC2	65	57.088	Pan_troglodytes
ENSCSAVG00000007923	-	100	65.957	ENSPANG00000004038	THOC2	63	56.453	Papio_anubis
ENSCSAVG00000007923	-	100	74.468	ENSPKIG00000021719	thoc2	68	58.541	Paramormyrops_kingsleyae
ENSCSAVG00000007923	-	99	77.419	ENSPSIG00000015352	THOC2	61	59.033	Pelodiscus_sinensis
ENSCSAVG00000007923	-	100	69.681	ENSPMGG00000002688	thoc2	68	55.500	Periophthalmus_magnuspinnatus
ENSCSAVG00000007923	-	100	76.596	ENSPEMG00000007626	Thoc2	62	58.227	Peromyscus_maniculatus_bairdii
ENSCSAVG00000007923	-	100	76.064	ENSPEMG00000011125	BC005561	62	59.681	Peromyscus_maniculatus_bairdii
ENSCSAVG00000007923	-	100	75.000	ENSPMAG00000007219	-	87	57.200	Petromyzon_marinus
ENSCSAVG00000007923	-	100	77.128	ENSPCIG00000007574	THOC2	88	57.449	Phascolarctos_cinereus
ENSCSAVG00000007923	-	100	72.872	ENSPFOG00000019556	thoc2	64	57.143	Poecilia_formosa
ENSCSAVG00000007923	-	100	71.809	ENSPLAG00000005761	thoc2	64	55.932	Poecilia_latipinna
ENSCSAVG00000007923	-	100	71.809	ENSPMEG00000002951	thoc2	64	55.932	Poecilia_mexicana
ENSCSAVG00000007923	-	100	73.936	ENSPREG00000021746	thoc2	64	57.143	Poecilia_reticulata
ENSCSAVG00000007923	-	99	76.882	ENSPPYG00000020695	THOC2	62	58.325	Pongo_abelii
ENSCSAVG00000007923	-	97	58.242	ENSPCAG00000005402	THOC2	67	48.473	Procavia_capensis
ENSCSAVG00000007923	-	100	74.479	ENSPCOG00000001806	THOC2	64	58.489	Propithecus_coquereli
ENSCSAVG00000007923	-	100	72.872	ENSPVAG00000006132	THOC2	67	57.438	Pteropus_vampyrus
ENSCSAVG00000007923	-	100	75.532	ENSPNYG00000019622	thoc2	68	57.000	Pundamilia_nyererei
ENSCSAVG00000007923	-	100	75.000	ENSPNAG00000020593	thoc2	65	56.112	Pygocentrus_nattereri
ENSCSAVG00000007923	-	100	76.596	ENSRNOG00000042340	LOC679894	62	58.284	Rattus_norvegicus
ENSCSAVG00000007923	-	100	76.064	ENSRNOG00000007315	Thoc2	62	58.227	Rattus_norvegicus
ENSCSAVG00000007923	-	100	76.064	ENSRBIG00000044129	THOC2	79	57.978	Rhinopithecus_bieti
ENSCSAVG00000007923	-	100	76.064	ENSRROG00000041515	THOC2	64	58.325	Rhinopithecus_roxellana
ENSCSAVG00000007923	-	100	76.064	ENSSBOG00000007245	THOC2	63	58.284	Saimiri_boliviensis_boliviensis
ENSCSAVG00000007923	-	99	77.957	ENSSHAG00000015987	THOC2	63	59.621	Sarcophilus_harrisii
ENSCSAVG00000007923	-	99	75.269	ENSSFOG00015010127	thoc2	74	57.942	Scleropages_formosus
ENSCSAVG00000007923	-	100	75.000	ENSSFOG00015004767	THOC2	72	54.356	Scleropages_formosus
ENSCSAVG00000007923	-	100	73.936	ENSSMAG00000016574	thoc2	63	56.943	Scophthalmus_maximus
ENSCSAVG00000007923	-	100	73.936	ENSSDUG00000012815	thoc2	66	57.343	Seriola_dumerili
ENSCSAVG00000007923	-	100	73.936	ENSSLDG00000015816	thoc2	63	57.343	Seriola_lalandi_dorsalis
ENSCSAVG00000007923	-	100	76.064	ENSSARG00000005799	THOC2	65	55.862	Sorex_araneus
ENSCSAVG00000007923	-	99	76.882	ENSSPUG00000012889	THOC2	62	58.556	Sphenodon_punctatus
ENSCSAVG00000007923	-	100	74.468	ENSSPAG00000023593	thoc2	70	57.443	Stegastes_partitus
ENSCSAVG00000007923	-	100	76.064	ENSSSCG00000012639	THOC2	70	57.975	Sus_scrofa
ENSCSAVG00000007923	-	99	76.344	ENSTGUG00000003682	THOC2	67	59.740	Taeniopygia_guttata
ENSCSAVG00000007923	-	100	72.872	ENSTRUG00000015122	thoc2	64	56.827	Takifugu_rubripes
ENSCSAVG00000007923	-	100	72.872	ENSTNIG00000011794	thoc2	65	56.757	Tetraodon_nigroviridis
ENSCSAVG00000007923	-	100	75.532	ENSTBEG00000004420	-	73	58.774	Tupaia_belangeri
ENSCSAVG00000007923	-	99	76.882	ENSTTRG00000002762	THOC2	61	67.489	Tursiops_truncatus
ENSCSAVG00000007923	-	100	76.064	ENSUAMG00000008780	THOC2	75	59.182	Ursus_americanus
ENSCSAVG00000007923	-	100	67.553	ENSUMAG00000024014	THOC2	73	57.157	Ursus_maritimus
ENSCSAVG00000007923	-	99	76.882	ENSVPAG00000006247	THOC2	67	58.284	Vicugna_pacos
ENSCSAVG00000007923	-	100	76.064	ENSVVUG00000028282	THOC2	76	59.182	Vulpes_vulpes
ENSCSAVG00000007923	-	100	76.064	ENSXETG00000016195	thoc2	98	68.197	Xenopus_tropicalis
ENSCSAVG00000007923	-	100	71.809	ENSXCOG00000006301	thoc2	65	55.633	Xiphophorus_couchianus
ENSCSAVG00000007923	-	100	73.404	ENSXMAG00000011604	thoc2	71	56.244	Xiphophorus_maculatus