EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000008124 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 13146 bases
Position: chrreftig_9:107432-120577
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000013852	RtcB	PF01139.17	8.1e-149	1	1
ENSCSAVP00000013853	RtcB	PF01139.17	9.1e-135	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000014012	-	1527	-	ENSCSAVP00000013852	508 (aa)	-	H2Z8E0
ENSCSAVT00000014013	-	1320	-	ENSCSAVP00000013853	439 (aa)	-	H2Z8E1

Gene Model

Click here to download ENSCSAVG00000008124's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000008124's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000008124	-	99	82.178	ENSG00000100220	RTCB	100	82.178	Homo_sapiens
ENSCSAVG00000008124	-	99	83.564	ENSAPOG00000006040	rtcb	100	83.564	Acanthochromis_polyacanthus
ENSCSAVG00000008124	-	99	82.178	ENSAMEG00000016152	RTCB	100	82.178	Ailuropoda_melanoleuca
ENSCSAVG00000008124	-	100	81.777	ENSACIG00000009083	rtcb	100	78.968	Amphilophus_citrinellus
ENSCSAVG00000008124	-	99	83.366	ENSAOCG00000005662	rtcb	100	85.870	Amphiprion_ocellaris
ENSCSAVG00000008124	-	99	83.366	ENSAPEG00000024701	rtcb	100	83.366	Amphiprion_percula
ENSCSAVG00000008124	-	100	79.043	ENSAPEG00000024653	rtcb	100	80.287	Amphiprion_percula
ENSCSAVG00000008124	-	100	82.460	ENSATEG00000000618	rtcb	100	83.168	Anabas_testudineus
ENSCSAVG00000008124	-	100	81.549	ENSACAG00000014817	RTCB	100	80.732	Anolis_carolinensis
ENSCSAVG00000008124	-	99	69.307	ENSANAG00000018191	-	91	69.307	Aotus_nancymaae
ENSCSAVG00000008124	-	72	83.333	ENSANAG00000023724	-	84	83.333	Aotus_nancymaae
ENSCSAVG00000008124	-	99	82.772	ENSACLG00000008367	rtcb	100	85.217	Astatotilapia_calliptera
ENSCSAVG00000008124	-	100	82.005	ENSAMXG00000042320	rtcb	100	82.772	Astyanax_mexicanus
ENSCSAVG00000008124	-	99	82.178	ENSBTAG00000011070	RTCB	100	82.178	Bos_taurus
ENSCSAVG00000008124	-	99	75.248	WBGene00008877	rtcb-1	100	75.248	Caenorhabditis_elegans
ENSCSAVG00000008124	-	99	81.980	ENSCJAG00000006128	RTCB	100	81.980	Callithrix_jacchus
ENSCSAVG00000008124	-	99	82.178	ENSCAFG00000001785	RTCB	100	82.178	Canis_familiaris
ENSCSAVG00000008124	-	100	77.221	ENSCAFG00000010789	-	100	78.020	Canis_familiaris
ENSCSAVG00000008124	-	99	82.178	ENSCAFG00020004890	-	100	82.178	Canis_lupus_dingo
ENSCSAVG00000008124	-	86	78.409	ENSCAFG00020018953	-	99	78.636	Canis_lupus_dingo
ENSCSAVG00000008124	-	54	60.338	ENSCHIG00000017428	-	100	64.192	Capra_hircus
ENSCSAVG00000008124	-	99	82.178	ENSCHIG00000027009	-	100	82.178	Capra_hircus
ENSCSAVG00000008124	-	99	82.178	ENSTSYG00000012320	RTCB	100	82.178	Carlito_syrichta
ENSCSAVG00000008124	-	100	81.093	ENSCAPG00000011647	RTCB	96	83.857	Cavia_aperea
ENSCSAVG00000008124	-	99	81.980	ENSCCAG00000000618	RTCB	100	81.980	Cebus_capucinus
ENSCSAVG00000008124	-	99	81.980	ENSCATG00000033424	RTCB	100	81.980	Cercocebus_atys
ENSCSAVG00000008124	-	99	82.178	ENSCLAG00000007997	RTCB	100	82.178	Chinchilla_lanigera
ENSCSAVG00000008124	-	99	81.980	ENSCSAG00000008351	RTCB	100	81.980	Chlorocebus_sabaeus
ENSCSAVG00000008124	-	99	69.703	ENSCHOG00000009123	RTCB	100	69.703	Choloepus_hoffmanni
ENSCSAVG00000008124	-	100	80.638	ENSCPBG00000023184	RTCB	100	81.584	Chrysemys_picta_bellii
ENSCSAVG00000008124	-	99	94.643	ENSCING00000003830	-	100	94.643	Ciona_intestinalis
ENSCSAVG00000008124	-	99	78.812	ENSCANG00000001891	RTCB	100	78.812	Colobus_angolensis_palliatus
ENSCSAVG00000008124	-	99	81.782	ENSCGRG00001011173	Rtcb	100	81.782	Cricetulus_griseus_chok1gshd
ENSCSAVG00000008124	-	100	80.866	ENSCGRG00000009587	-	96	84.255	Cricetulus_griseus_crigri
ENSCSAVG00000008124	-	100	81.549	ENSCSEG00000003986	rtcb	100	82.178	Cynoglossus_semilaevis
ENSCSAVG00000008124	-	90	84.304	ENSCVAG00000000569	rtcb	93	85.610	Cyprinodon_variegatus
ENSCSAVG00000008124	-	100	81.549	ENSDARG00000101047	rtcb	100	82.376	Danio_rerio
ENSCSAVG00000008124	-	80	78.870	ENSDNOG00000012425	RTCB	99	78.870	Dasypus_novemcinctus
ENSCSAVG00000008124	-	100	81.321	ENSDORG00000010855	Rtcb	100	82.178	Dipodomys_ordii
ENSCSAVG00000008124	-	100	78.132	FBgn0032781	RtcB	99	79.125	Drosophila_melanogaster
ENSCSAVG00000008124	-	99	77.426	ENSETEG00000001988	RTCB	100	77.426	Echinops_telfairi
ENSCSAVG00000008124	-	99	77.624	ENSEBUG00000014235	rtcb	100	77.624	Eptatretus_burgeri
ENSCSAVG00000008124	-	99	82.178	ENSEASG00005019059	RTCB	100	82.178	Equus_asinus_asinus
ENSCSAVG00000008124	-	99	82.178	ENSECAG00000023998	RTCB	100	82.178	Equus_caballus
ENSCSAVG00000008124	-	100	72.665	ENSEEUG00000006251	RTCB	99	77.354	Erinaceus_europaeus
ENSCSAVG00000008124	-	99	71.645	ENSELUG00000009275	rtcb	100	71.645	Esox_lucius
ENSCSAVG00000008124	-	99	82.178	ENSFCAG00000026480	RTCB	100	82.178	Felis_catus
ENSCSAVG00000008124	-	100	80.866	ENSFALG00000013334	RTCB	100	81.782	Ficedula_albicollis
ENSCSAVG00000008124	-	100	81.093	ENSFDAG00000018150	RTCB	100	81.980	Fukomys_damarensis
ENSCSAVG00000008124	-	99	82.772	ENSFHEG00000009595	rtcb	100	82.772	Fundulus_heteroclitus
ENSCSAVG00000008124	-	99	81.782	ENSGMOG00000018882	rtcb	100	81.782	Gadus_morhua
ENSCSAVG00000008124	-	100	80.866	ENSGALG00000012611	RTCB	100	81.782	Gallus_gallus
ENSCSAVG00000008124	-	100	82.005	ENSGAFG00000004198	rtcb	100	82.970	Gambusia_affinis
ENSCSAVG00000008124	-	100	81.321	ENSGACG00000000586	rtcb	100	81.980	Gasterosteus_aculeatus
ENSCSAVG00000008124	-	92	80.851	ENSGAGG00000019133	RTCB	98	80.851	Gopherus_agassizii
ENSCSAVG00000008124	-	99	82.178	ENSGGOG00000011402	RTCB	100	82.178	Gorilla_gorilla
ENSCSAVG00000008124	-	99	82.772	ENSHBUG00000020571	rtcb	100	82.772	Haplochromis_burtoni
ENSCSAVG00000008124	-	99	58.219	ENSHGLG00000001066	-	99	61.966	Heterocephalus_glaber_female
ENSCSAVG00000008124	-	100	81.093	ENSHGLG00000004492	RTCB	100	81.980	Heterocephalus_glaber_female
ENSCSAVG00000008124	-	100	81.093	ENSHGLG00100008965	RTCB	100	81.980	Heterocephalus_glaber_male
ENSCSAVG00000008124	-	99	81.854	ENSHCOG00000006450	rtcb	100	81.854	Hippocampus_comes
ENSCSAVG00000008124	-	99	83.564	ENSIPUG00000015443	rtcb	100	83.564	Ictalurus_punctatus
ENSCSAVG00000008124	-	99	82.376	ENSSTOG00000003878	RTCB	100	82.376	Ictidomys_tridecemlineatus
ENSCSAVG00000008124	-	99	81.782	ENSJJAG00000010667	Rtcb	100	81.782	Jaculus_jaculus
ENSCSAVG00000008124	-	100	82.232	ENSKMAG00000013178	rtcb	100	82.970	Kryptolebias_marmoratus
ENSCSAVG00000008124	-	100	82.232	ENSLBEG00000010566	RTCB	100	82.772	Labrus_bergylta
ENSCSAVG00000008124	-	100	81.093	ENSLBEG00000000214	rtcb	100	81.782	Labrus_bergylta
ENSCSAVG00000008124	-	100	80.638	ENSLACG00000013033	RTCB	100	81.386	Latimeria_chalumnae
ENSCSAVG00000008124	-	100	81.093	ENSLOCG00000016515	rtcb	100	82.016	Lepisosteus_oculatus
ENSCSAVG00000008124	-	99	81.980	ENSLAFG00000002082	RTCB	100	81.980	Loxodonta_africana
ENSCSAVG00000008124	-	99	81.980	ENSMFAG00000034419	RTCB	100	81.980	Macaca_fascicularis
ENSCSAVG00000008124	-	99	81.980	ENSMMUG00000006720	RTCB	100	81.980	Macaca_mulatta
ENSCSAVG00000008124	-	99	81.980	ENSMNEG00000040669	RTCB	100	81.980	Macaca_nemestrina
ENSCSAVG00000008124	-	99	81.980	ENSMLEG00000040505	RTCB	100	81.980	Mandrillus_leucophaeus
ENSCSAVG00000008124	-	100	81.777	ENSMAMG00000020676	rtcb	100	82.574	Mastacembelus_armatus
ENSCSAVG00000008124	-	99	82.772	ENSMZEG00005018942	rtcb	100	82.772	Maylandia_zebra
ENSCSAVG00000008124	-	100	80.499	ENSMGAG00000012805	RTCB	100	81.460	Meleagris_gallopavo
ENSCSAVG00000008124	-	59	87.611	ENSMAUG00000008301	Rtcb	100	87.611	Mesocricetus_auratus
ENSCSAVG00000008124	-	99	82.178	ENSMICG00000013303	-	100	82.178	Microcebus_murinus
ENSCSAVG00000008124	-	97	66.531	ENSMICG00000036677	-	98	66.531	Microcebus_murinus
ENSCSAVG00000008124	-	99	81.980	ENSMOCG00000002440	Rtcb	100	81.980	Microtus_ochrogaster
ENSCSAVG00000008124	-	100	81.321	ENSMMOG00000005987	rtcb	100	82.178	Mola_mola
ENSCSAVG00000008124	-	100	80.638	ENSMODG00000001414	RTCB	100	81.584	Monodelphis_domestica
ENSCSAVG00000008124	-	100	81.777	ENSMALG00000007603	rtcb	100	82.574	Monopterus_albus
ENSCSAVG00000008124	-	99	81.980	MGP_CAROLIEiJ_G0015689	Rtcb	100	81.980	Mus_caroli
ENSCSAVG00000008124	-	99	81.980	ENSMUSG00000001783	Rtcb	100	81.980	Mus_musculus
ENSCSAVG00000008124	-	99	81.980	MGP_PahariEiJ_G0031396	Rtcb	100	81.980	Mus_pahari
ENSCSAVG00000008124	-	99	81.980	MGP_SPRETEiJ_G0016507	Rtcb	100	81.980	Mus_spretus
ENSCSAVG00000008124	-	99	82.178	ENSMPUG00000012285	RTCB	100	82.178	Mustela_putorius_furo
ENSCSAVG00000008124	-	100	81.093	ENSMLUG00000007803	RTCB	100	80.473	Myotis_lucifugus
ENSCSAVG00000008124	-	72	85.333	ENSNGAG00000005093	Rtcb	100	85.333	Nannospalax_galili
ENSCSAVG00000008124	-	99	82.970	ENSNBRG00000017202	rtcb	100	82.970	Neolamprologus_brichardi
ENSCSAVG00000008124	-	99	82.178	ENSNLEG00000004960	RTCB	100	82.178	Nomascus_leucogenys
ENSCSAVG00000008124	-	76	87.500	ENSMEUG00000007809	-	76	87.500	Notamacropus_eugenii
ENSCSAVG00000008124	-	72	85.000	ENSOPRG00000003488	RTCB	79	85.000	Ochotona_princeps
ENSCSAVG00000008124	-	99	54.455	ENSODEG00000005042	-	100	54.455	Octodon_degus
ENSCSAVG00000008124	-	74	86.792	ENSODEG00000013033	-	100	86.792	Octodon_degus
ENSCSAVG00000008124	-	99	82.970	ENSONIG00000007474	rtcb	100	82.970	Oreochromis_niloticus
ENSCSAVG00000008124	-	100	81.093	ENSOANG00000005524	RTCB	100	81.980	Ornithorhynchus_anatinus
ENSCSAVG00000008124	-	92	81.702	ENSOCUG00000008270	RTCB	96	81.702	Oryctolagus_cuniculus
ENSCSAVG00000008124	-	100	81.777	ENSORLG00000020093	rtcb	100	82.574	Oryzias_latipes
ENSCSAVG00000008124	-	100	81.777	ENSORLG00020003706	rtcb	99	85.053	Oryzias_latipes_hni
ENSCSAVG00000008124	-	100	81.777	ENSORLG00015002968	rtcb	100	82.574	Oryzias_latipes_hsok
ENSCSAVG00000008124	-	100	81.549	ENSOMEG00000021278	rtcb	100	82.376	Oryzias_melastigma
ENSCSAVG00000008124	-	99	82.178	ENSOGAG00000001425	RTCB	100	82.178	Otolemur_garnettii
ENSCSAVG00000008124	-	99	82.178	ENSOARG00000018008	RTCB	100	82.178	Ovis_aries
ENSCSAVG00000008124	-	99	82.178	ENSPPAG00000028667	RTCB	100	82.178	Pan_paniscus
ENSCSAVG00000008124	-	99	82.178	ENSPPRG00000004038	RTCB	100	82.178	Panthera_pardus
ENSCSAVG00000008124	-	100	76.765	ENSPTIG00000020499	RTCB	99	78.732	Panthera_tigris_altaica
ENSCSAVG00000008124	-	99	82.178	ENSPTRG00000014287	RTCB	100	82.178	Pan_troglodytes
ENSCSAVG00000008124	-	99	81.980	ENSPANG00000016035	RTCB	100	81.980	Papio_anubis
ENSCSAVG00000008124	-	100	82.460	ENSPKIG00000001881	rtcb	100	83.168	Paramormyrops_kingsleyae
ENSCSAVG00000008124	-	100	80.410	ENSPSIG00000011690	RTCB	100	83.913	Pelodiscus_sinensis
ENSCSAVG00000008124	-	100	81.777	ENSPMGG00000016672	rtcb	100	82.178	Periophthalmus_magnuspinnatus
ENSCSAVG00000008124	-	99	81.980	ENSPEMG00000019548	Rtcb	100	81.980	Peromyscus_maniculatus_bairdii
ENSCSAVG00000008124	-	99	82.574	ENSPMAG00000005657	rtcb	100	82.574	Petromyzon_marinus
ENSCSAVG00000008124	-	100	81.093	ENSPCIG00000009467	RTCB	100	81.980	Phascolarctos_cinereus
ENSCSAVG00000008124	-	99	83.168	ENSPFOG00000003058	rtcb	100	83.168	Poecilia_formosa
ENSCSAVG00000008124	-	99	83.168	ENSPLAG00000017663	rtcb	100	83.168	Poecilia_latipinna
ENSCSAVG00000008124	-	99	83.168	ENSPMEG00000006227	rtcb	100	83.168	Poecilia_mexicana
ENSCSAVG00000008124	-	99	83.366	ENSPREG00000018467	rtcb	100	83.366	Poecilia_reticulata
ENSCSAVG00000008124	-	99	82.178	ENSPPYG00000011752	RTCB	100	82.178	Pongo_abelii
ENSCSAVG00000008124	-	92	65.605	ENSPCAG00000013641	RTCB	100	65.605	Procavia_capensis
ENSCSAVG00000008124	-	99	82.178	ENSPCOG00000017243	RTCB	100	82.178	Propithecus_coquereli
ENSCSAVG00000008124	-	92	81.450	ENSPVAG00000002380	RTCB	100	81.450	Pteropus_vampyrus
ENSCSAVG00000008124	-	99	82.772	ENSPNYG00000022760	rtcb	100	82.772	Pundamilia_nyererei
ENSCSAVG00000008124	-	100	81.777	ENSPNAG00000009209	rtcb	100	82.772	Pygocentrus_nattereri
ENSCSAVG00000008124	-	99	81.980	ENSRNOG00000004813	Rtcb	100	81.980	Rattus_norvegicus
ENSCSAVG00000008124	-	99	74.556	ENSRBIG00000042090	RTCB	100	74.556	Rhinopithecus_bieti
ENSCSAVG00000008124	-	100	77.449	ENSSBOG00000020085	-	100	77.822	Saimiri_boliviensis_boliviensis
ENSCSAVG00000008124	-	100	81.093	ENSSHAG00000016277	RTCB	100	84.388	Sarcophilus_harrisii
ENSCSAVG00000008124	-	99	80.594	ENSSFOG00015011572	RTCB	100	80.594	Scleropages_formosus
ENSCSAVG00000008124	-	100	82.005	ENSSFOG00015000763	rtcb	100	82.970	Scleropages_formosus
ENSCSAVG00000008124	-	100	81.093	ENSSMAG00000005096	rtcb	100	79.802	Scophthalmus_maximus
ENSCSAVG00000008124	-	100	82.005	ENSSDUG00000012605	rtcb	100	82.772	Seriola_dumerili
ENSCSAVG00000008124	-	100	82.005	ENSSLDG00000019458	rtcb	100	82.574	Seriola_lalandi_dorsalis
ENSCSAVG00000008124	-	66	85.714	ENSSARG00000004799	-	70	85.714	Sorex_araneus
ENSCSAVG00000008124	-	100	80.638	ENSSPUG00000012814	RTCB	100	81.584	Sphenodon_punctatus
ENSCSAVG00000008124	-	99	83.366	ENSSPAG00000004623	rtcb	100	83.366	Stegastes_partitus
ENSCSAVG00000008124	-	99	82.178	ENSSSCG00000000158	RTCB	100	82.178	Sus_scrofa
ENSCSAVG00000008124	-	100	80.866	ENSTGUG00000010947	RTCB	99	81.782	Taeniopygia_guttata
ENSCSAVG00000008124	-	100	82.005	ENSTRUG00000009880	rtcb	100	85.839	Takifugu_rubripes
ENSCSAVG00000008124	-	99	81.386	ENSTNIG00000002484	rtcb	100	81.386	Tetraodon_nigroviridis
ENSCSAVG00000008124	-	99	72.477	ENSTBEG00000004418	RTCB	100	71.089	Tupaia_belangeri
ENSCSAVG00000008124	-	92	82.128	ENSTTRG00000006417	RTCB	100	82.128	Tursiops_truncatus
ENSCSAVG00000008124	-	99	82.178	ENSUAMG00000022792	RTCB	100	82.178	Ursus_americanus
ENSCSAVG00000008124	-	99	82.178	ENSUMAG00000017225	RTCB	100	82.178	Ursus_maritimus
ENSCSAVG00000008124	-	99	81.980	ENSVPAG00000005375	RTCB	100	81.980	Vicugna_pacos
ENSCSAVG00000008124	-	99	82.178	ENSVVUG00000023408	RTCB	100	85.749	Vulpes_vulpes
ENSCSAVG00000008124	-	100	80.638	ENSXETG00000011523	rtcb	100	81.188	Xenopus_tropicalis
ENSCSAVG00000008124	-	54	79.325	ENSXCOG00000011944	rtcb	100	82.969	Xiphophorus_couchianus
ENSCSAVG00000008124	-	99	82.970	ENSXMAG00000002855	rtcb	100	82.970	Xiphophorus_maculatus