EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000008353 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 438 bases
Position: chrreftig_49:1247641-1248078
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000014255	RNA_pol_Rpb4	PF03874.16	2.5e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000014420	-	438	-	ENSCSAVP00000014255	145 (aa)	-	H2Z9J0

Gene Model

Click here to download ENSCSAVG00000008353's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000008353's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000008353	-	88	86.719	ENSG00000144231	POLR2D	99	87.379	Homo_sapiens
ENSCSAVG00000008353	-	99	81.944	ENSAPOG00000023553	polr2d	99	81.944	Acanthochromis_polyacanthus
ENSCSAVG00000008353	-	88	85.385	ENSAMEG00000011746	POLR2D	90	85.385	Ailuropoda_melanoleuca
ENSCSAVG00000008353	-	99	81.944	ENSAOCG00000007295	polr2d	99	81.944	Amphiprion_ocellaris
ENSCSAVG00000008353	-	99	81.944	ENSAPEG00000018714	polr2d	99	81.944	Amphiprion_percula
ENSCSAVG00000008353	-	99	79.861	ENSATEG00000020416	polr2d	99	79.861	Anabas_testudineus
ENSCSAVG00000008353	-	88	87.500	ENSACAG00000005255	POLR2D	90	87.500	Anolis_carolinensis
ENSCSAVG00000008353	-	88	86.719	ENSANAG00000019959	POLR2D	90	86.719	Aotus_nancymaae
ENSCSAVG00000008353	-	99	81.250	ENSACLG00000009919	polr2d	99	61.111	Astatotilapia_calliptera
ENSCSAVG00000008353	-	91	84.848	ENSAMXG00000008954	polr2d	99	80.556	Astyanax_mexicanus
ENSCSAVG00000008353	-	88	86.719	ENSBTAG00000053244	POLR2D	90	86.719	Bos_taurus
ENSCSAVG00000008353	-	88	56.154	WBGene00018391	rpb-4	90	56.154	Caenorhabditis_elegans
ENSCSAVG00000008353	-	88	86.719	ENSCJAG00000042216	-	90	86.719	Callithrix_jacchus
ENSCSAVG00000008353	-	88	85.938	ENSCJAG00000021814	-	90	85.938	Callithrix_jacchus
ENSCSAVG00000008353	-	88	86.719	ENSCAFG00000004311	POLR2D	90	86.719	Canis_familiaris
ENSCSAVG00000008353	-	88	86.719	ENSCAFG00020003617	POLR2D	90	86.719	Canis_lupus_dingo
ENSCSAVG00000008353	-	88	86.719	ENSCHIG00000025995	POLR2D	90	86.719	Capra_hircus
ENSCSAVG00000008353	-	80	87.069	ENSTSYG00000036021	POLR2D	99	87.069	Carlito_syrichta
ENSCSAVG00000008353	-	88	86.719	ENSCPOG00000002571	POLR2D	90	86.719	Cavia_porcellus
ENSCSAVG00000008353	-	88	86.719	ENSCCAG00000037709	POLR2D	90	86.719	Cebus_capucinus
ENSCSAVG00000008353	-	88	86.719	ENSCATG00000036749	POLR2D	90	86.719	Cercocebus_atys
ENSCSAVG00000008353	-	88	86.719	ENSCLAG00000004449	POLR2D	90	86.719	Chinchilla_lanigera
ENSCSAVG00000008353	-	88	86.719	ENSCSAG00000016861	POLR2D	90	86.719	Chlorocebus_sabaeus
ENSCSAVG00000008353	-	80	87.931	ENSCHOG00000013850	POLR2D	99	87.931	Choloepus_hoffmanni
ENSCSAVG00000008353	-	99	80.556	ENSCPBG00000019132	POLR2D	50	80.556	Chrysemys_picta_bellii
ENSCSAVG00000008353	-	92	93.985	ENSCING00000011474	-	100	93.985	Ciona_intestinalis
ENSCSAVG00000008353	-	88	86.719	ENSCANG00000043665	POLR2D	90	86.719	Colobus_angolensis_palliatus
ENSCSAVG00000008353	-	88	86.719	ENSCGRG00001013608	Polr2d	90	86.719	Cricetulus_griseus_chok1gshd
ENSCSAVG00000008353	-	80	87.931	ENSCGRG00000012624	Polr2d	99	87.931	Cricetulus_griseus_crigri
ENSCSAVG00000008353	-	99	81.250	ENSCSEG00000006147	polr2d	99	81.250	Cynoglossus_semilaevis
ENSCSAVG00000008353	-	99	79.861	ENSCVAG00000000779	polr2d	99	79.861	Cyprinodon_variegatus
ENSCSAVG00000008353	-	88	88.281	ENSDARG00000076509	polr2d	91	88.281	Danio_rerio
ENSCSAVG00000008353	-	88	86.719	ENSDNOG00000008527	POLR2D	90	86.719	Dasypus_novemcinctus
ENSCSAVG00000008353	-	88	86.719	ENSDORG00000026897	Polr2d	90	86.719	Dipodomys_ordii
ENSCSAVG00000008353	-	88	74.219	FBgn0263757	Rpb4	92	74.219	Drosophila_melanogaster
ENSCSAVG00000008353	-	88	88.281	ENSEBUG00000007675	polr2d	90	88.281	Eptatretus_burgeri
ENSCSAVG00000008353	-	88	86.719	ENSEASG00005007103	POLR2D	90	86.719	Equus_asinus_asinus
ENSCSAVG00000008353	-	88	86.719	ENSECAG00000000556	POLR2D	90	86.719	Equus_caballus
ENSCSAVG00000008353	-	97	81.560	ENSELUG00000005928	polr2d	99	81.560	Esox_lucius
ENSCSAVG00000008353	-	88	86.719	ENSFCAG00000027816	POLR2D	90	86.719	Felis_catus
ENSCSAVG00000008353	-	90	86.260	ENSFALG00000003528	POLR2D	92	86.260	Ficedula_albicollis
ENSCSAVG00000008353	-	88	86.719	ENSFDAG00000007217	POLR2D	90	86.719	Fukomys_damarensis
ENSCSAVG00000008353	-	91	84.848	ENSGMOG00000001823	polr2d	92	84.848	Gadus_morhua
ENSCSAVG00000008353	-	99	80.556	ENSGALG00000002057	POLR2D	99	80.556	Gallus_gallus
ENSCSAVG00000008353	-	99	80.556	ENSGAFG00000016932	polr2d	70	80.556	Gambusia_affinis
ENSCSAVG00000008353	-	99	79.167	ENSGACG00000004639	polr2d	99	79.167	Gasterosteus_aculeatus
ENSCSAVG00000008353	-	91	85.606	ENSGAGG00000021308	POLR2D	93	85.606	Gopherus_agassizii
ENSCSAVG00000008353	-	88	86.719	ENSGGOG00000004723	POLR2D	90	86.719	Gorilla_gorilla
ENSCSAVG00000008353	-	88	86.719	ENSHGLG00000016570	Polr2d	90	86.719	Heterocephalus_glaber_female
ENSCSAVG00000008353	-	88	86.719	ENSHGLG00100013785	Polr2d	90	86.719	Heterocephalus_glaber_male
ENSCSAVG00000008353	-	91	83.333	ENSHCOG00000006425	polr2d	93	83.333	Hippocampus_comes
ENSCSAVG00000008353	-	88	88.281	ENSIPUG00000011192	polr2d	91	88.281	Ictalurus_punctatus
ENSCSAVG00000008353	-	88	85.938	ENSSTOG00000023329	POLR2D	90	85.938	Ictidomys_tridecemlineatus
ENSCSAVG00000008353	-	88	86.719	ENSJJAG00000015053	-	90	86.719	Jaculus_jaculus
ENSCSAVG00000008353	-	80	83.621	ENSJJAG00000005723	-	93	83.621	Jaculus_jaculus
ENSCSAVG00000008353	-	99	72.222	ENSJJAG00000000783	-	99	72.222	Jaculus_jaculus
ENSCSAVG00000008353	-	81	88.034	ENSKMAG00000010677	polr2d	66	88.034	Kryptolebias_marmoratus
ENSCSAVG00000008353	-	92	85.821	ENSLACG00000017253	POLR2D	94	85.821	Latimeria_chalumnae
ENSCSAVG00000008353	-	99	79.861	ENSLOCG00000009106	polr2d	99	79.861	Lepisosteus_oculatus
ENSCSAVG00000008353	-	88	86.719	ENSLAFG00000001848	POLR2D	90	86.719	Loxodonta_africana
ENSCSAVG00000008353	-	88	86.719	ENSMFAG00000031937	POLR2D	90	86.719	Macaca_fascicularis
ENSCSAVG00000008353	-	88	86.719	ENSMMUG00000001989	POLR2D	90	86.719	Macaca_mulatta
ENSCSAVG00000008353	-	88	86.719	ENSMNEG00000035505	POLR2D	90	86.719	Macaca_nemestrina
ENSCSAVG00000008353	-	88	86.719	ENSMLEG00000035827	POLR2D	90	86.719	Mandrillus_leucophaeus
ENSCSAVG00000008353	-	99	80.556	ENSMGAG00000001248	POLR2D	99	80.556	Meleagris_gallopavo
ENSCSAVG00000008353	-	88	85.938	ENSMAUG00000014518	Polr2d	90	85.938	Mesocricetus_auratus
ENSCSAVG00000008353	-	88	86.719	ENSMICG00000009931	POLR2D	90	86.719	Microcebus_murinus
ENSCSAVG00000008353	-	88	84.375	ENSMOCG00000019367	Polr2d	90	84.375	Microtus_ochrogaster
ENSCSAVG00000008353	-	88	76.562	ENSMODG00000025033	-	90	76.562	Monodelphis_domestica
ENSCSAVG00000008353	-	88	76.562	ENSMODG00000025036	-	90	76.562	Monodelphis_domestica
ENSCSAVG00000008353	-	88	87.500	ENSMODG00000018653	-	90	87.500	Monodelphis_domestica
ENSCSAVG00000008353	-	88	76.562	ENSMODG00000025031	-	90	76.562	Monodelphis_domestica
ENSCSAVG00000008353	-	88	77.344	ENSMODG00000025030	-	90	77.344	Monodelphis_domestica
ENSCSAVG00000008353	-	88	75.781	ENSMODG00000025032	-	90	75.781	Monodelphis_domestica
ENSCSAVG00000008353	-	88	76.562	ENSMODG00000025035	-	90	76.562	Monodelphis_domestica
ENSCSAVG00000008353	-	88	76.562	ENSMODG00000025034	-	90	76.562	Monodelphis_domestica
ENSCSAVG00000008353	-	88	77.344	ENSMODG00000025026	-	90	77.344	Monodelphis_domestica
ENSCSAVG00000008353	-	88	77.344	ENSMODG00000025027	-	90	77.344	Monodelphis_domestica
ENSCSAVG00000008353	-	88	77.344	ENSMODG00000025028	-	90	77.344	Monodelphis_domestica
ENSCSAVG00000008353	-	88	76.562	ENSMODG00000025029	-	90	76.562	Monodelphis_domestica
ENSCSAVG00000008353	-	99	81.250	ENSMALG00000018266	polr2d	99	81.250	Monopterus_albus
ENSCSAVG00000008353	-	88	86.719	MGP_CAROLIEiJ_G0022066	Polr2d	90	86.719	Mus_caroli
ENSCSAVG00000008353	-	88	86.719	ENSMUSG00000024258	Polr2d	90	86.719	Mus_musculus
ENSCSAVG00000008353	-	88	86.719	MGP_PahariEiJ_G0018800	Polr2d	90	86.719	Mus_pahari
ENSCSAVG00000008353	-	88	86.719	MGP_SPRETEiJ_G0022977	Polr2d	90	86.719	Mus_spretus
ENSCSAVG00000008353	-	88	86.719	ENSMPUG00000016685	POLR2D	90	86.719	Mustela_putorius_furo
ENSCSAVG00000008353	-	81	88.034	ENSMLUG00000006862	POLR2D	99	88.034	Myotis_lucifugus
ENSCSAVG00000008353	-	88	86.719	ENSNGAG00000014862	Polr2d	90	86.719	Nannospalax_galili
ENSCSAVG00000008353	-	88	86.719	ENSNLEG00000027191	POLR2D	90	86.719	Nomascus_leucogenys
ENSCSAVG00000008353	-	80	87.069	ENSOPRG00000005327	POLR2D	99	87.069	Ochotona_princeps
ENSCSAVG00000008353	-	88	86.719	ENSODEG00000005262	POLR2D	90	86.719	Octodon_degus
ENSCSAVG00000008353	-	99	81.250	ENSONIG00000017290	polr2d	99	81.250	Oreochromis_niloticus
ENSCSAVG00000008353	-	81	88.889	ENSOANG00000013216	POLR2D	99	88.889	Ornithorhynchus_anatinus
ENSCSAVG00000008353	-	88	85.827	ENSOCUG00000023403	-	89	85.827	Oryctolagus_cuniculus
ENSCSAVG00000008353	-	88	79.845	ENSOCUG00000021449	-	90	79.845	Oryctolagus_cuniculus
ENSCSAVG00000008353	-	98	79.577	ENSORLG00000005266	polr2d	99	79.577	Oryzias_latipes
ENSCSAVG00000008353	-	98	79.577	ENSORLG00020006647	polr2d	99	79.577	Oryzias_latipes_hni
ENSCSAVG00000008353	-	98	79.577	ENSORLG00015003222	polr2d	99	79.577	Oryzias_latipes_hsok
ENSCSAVG00000008353	-	98	80.282	ENSOMEG00000018915	polr2d	99	80.282	Oryzias_melastigma
ENSCSAVG00000008353	-	88	85.385	ENSOGAG00000017118	POLR2D	90	85.385	Otolemur_garnettii
ENSCSAVG00000008353	-	88	86.719	ENSOARG00000015995	POLR2D	90	86.719	Ovis_aries
ENSCSAVG00000008353	-	88	86.719	ENSPPRG00000020222	POLR2D	90	86.719	Panthera_pardus
ENSCSAVG00000008353	-	88	86.719	ENSPTIG00000018618	POLR2D	90	86.719	Panthera_tigris_altaica
ENSCSAVG00000008353	-	88	86.719	ENSPTRG00000012436	POLR2D	90	86.719	Pan_troglodytes
ENSCSAVG00000008353	-	88	86.719	ENSPANG00000018602	POLR2D	90	86.719	Papio_anubis
ENSCSAVG00000008353	-	92	85.075	ENSPKIG00000012166	polr2d	93	85.075	Paramormyrops_kingsleyae
ENSCSAVG00000008353	-	81	88.889	ENSPSIG00000002873	POLR2D	99	88.889	Pelodiscus_sinensis
ENSCSAVG00000008353	-	88	86.719	ENSPEMG00000018244	Polr2d	90	86.719	Peromyscus_maniculatus_bairdii
ENSCSAVG00000008353	-	97	79.286	ENSPMAG00000005021	polr2d	98	79.286	Petromyzon_marinus
ENSCSAVG00000008353	-	99	80.556	ENSPFOG00000008969	polr2d	99	80.556	Poecilia_formosa
ENSCSAVG00000008353	-	99	80.556	ENSPLAG00000017210	polr2d	99	80.556	Poecilia_latipinna
ENSCSAVG00000008353	-	99	80.556	ENSPMEG00000005160	polr2d	99	80.556	Poecilia_mexicana
ENSCSAVG00000008353	-	71	88.350	ENSPREG00000021862	polr2d	99	88.350	Poecilia_reticulata
ENSCSAVG00000008353	-	88	86.719	ENSPPYG00000012759	POLR2D	90	86.719	Pongo_abelii
ENSCSAVG00000008353	-	88	86.719	ENSPCAG00000001396	POLR2D	90	86.719	Procavia_capensis
ENSCSAVG00000008353	-	88	86.719	ENSPCOG00000022076	POLR2D	90	86.719	Propithecus_coquereli
ENSCSAVG00000008353	-	88	86.719	ENSPVAG00000004002	POLR2D	90	86.719	Pteropus_vampyrus
ENSCSAVG00000008353	-	99	81.944	ENSPNAG00000018246	polr2d	99	81.944	Pygocentrus_nattereri
ENSCSAVG00000008353	-	88	86.719	ENSRNOG00000016231	Polr2d	90	86.719	Rattus_norvegicus
ENSCSAVG00000008353	-	88	86.719	ENSRBIG00000039326	POLR2D	90	86.719	Rhinopithecus_bieti
ENSCSAVG00000008353	-	88	86.719	ENSRROG00000023289	POLR2D	90	86.719	Rhinopithecus_roxellana
ENSCSAVG00000008353	-	88	87.500	ENSSHAG00000014817	-	90	87.500	Sarcophilus_harrisii
ENSCSAVG00000008353	-	88	88.281	ENSSFOG00015024204	polr2d	94	84.444	Scleropages_formosus
ENSCSAVG00000008353	-	99	80.556	ENSSDUG00000006060	polr2d	99	80.556	Seriola_dumerili
ENSCSAVG00000008353	-	91	84.848	ENSSLDG00000024485	polr2d	99	79.861	Seriola_lalandi_dorsalis
ENSCSAVG00000008353	-	80	87.069	ENSSARG00000009037	POLR2D	99	87.069	Sorex_araneus
ENSCSAVG00000008353	-	99	80.556	ENSSPUG00000014915	POLR2D	99	80.556	Sphenodon_punctatus
ENSCSAVG00000008353	-	99	81.250	ENSSPAG00000013386	polr2d	99	81.250	Stegastes_partitus
ENSCSAVG00000008353	-	88	86.719	ENSSSCG00000039230	POLR2D	90	86.719	Sus_scrofa
ENSCSAVG00000008353	-	99	80.556	ENSTGUG00000005773	POLR2D	99	80.556	Taeniopygia_guttata
ENSCSAVG00000008353	-	93	82.963	ENSTRUG00000004740	polr2d	95	82.963	Takifugu_rubripes
ENSCSAVG00000008353	-	93	84.444	ENSTNIG00000011210	polr2d	95	84.444	Tetraodon_nigroviridis
ENSCSAVG00000008353	-	80	87.931	ENSTBEG00000006081	POLR2D	99	87.931	Tupaia_belangeri
ENSCSAVG00000008353	-	80	87.931	ENSTTRG00000010055	POLR2D	99	87.931	Tursiops_truncatus
ENSCSAVG00000008353	-	88	86.719	ENSUAMG00000024374	POLR2D	97	86.719	Ursus_americanus
ENSCSAVG00000008353	-	80	87.931	ENSUMAG00000008280	POLR2D	99	87.379	Ursus_maritimus
ENSCSAVG00000008353	-	80	87.931	ENSVPAG00000007239	POLR2D	99	87.931	Vicugna_pacos
ENSCSAVG00000008353	-	88	86.719	ENSVVUG00000008616	POLR2D	90	86.719	Vulpes_vulpes
ENSCSAVG00000008353	-	99	77.083	ENSXETG00000002955	polr2d	99	77.083	Xenopus_tropicalis
ENSCSAVG00000008353	-	71	88.350	ENSXCOG00000012668	polr2d	99	88.350	Xiphophorus_couchianus
ENSCSAVG00000008353	-	71	88.350	ENSXMAG00000014031	polr2d	99	88.350	Xiphophorus_maculatus