EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000008514 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 19397 bases
Position: chrreftig_117:1130009-1149405
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000014547	GTP_EFTU	PF00009.27	8.7e-65	1	1
ENSCSAVP00000014545	GTP_EFTU	PF00009.27	9.3e-65	1	1
ENSCSAVP00000014548	GTP_EFTU	PF00009.27	9.3e-65	1	1
ENSCSAVP00000014546	GTP_EFTU	PF00009.27	1e-64	1	1
ENSCSAVP00000014549	GTP_EFTU	PF00009.27	2e-64	1	1
ENSCSAVP00000014547	MMR_HSR1	PF01926.23	4.2e-05	1	1
ENSCSAVP00000014546	MMR_HSR1	PF01926.23	4.3e-05	1	1
ENSCSAVP00000014549	MMR_HSR1	PF01926.23	4.4e-05	1	1
ENSCSAVP00000014545	MMR_HSR1	PF01926.23	4.5e-05	1	1
ENSCSAVP00000014548	MMR_HSR1	PF01926.23	4.5e-05	1	1
ENSCSAVP00000014545	GTP_EFTU_D2	PF03144.25	1.3e-10	1	1
ENSCSAVP00000014548	GTP_EFTU_D2	PF03144.25	1.3e-10	1	1
ENSCSAVP00000014547	GTP_EFTU_D2	PF03144.25	1.3e-10	1	1
ENSCSAVP00000014546	GTP_EFTU_D2	PF03144.25	1.3e-10	1	1
ENSCSAVP00000014549	GTP_EFTU_D2	PF03144.25	1.4e-10	1	1
ENSCSAVP00000014547	EFG_IV	PF03764.18	8e-35	1	1
ENSCSAVP00000014549	EFG_IV	PF03764.18	8.5e-35	1	1
ENSCSAVP00000014545	EFG_IV	PF03764.18	8.6e-35	1	1
ENSCSAVP00000014548	EFG_IV	PF03764.18	8.6e-35	1	1
ENSCSAVP00000014546	EFG_IV	PF03764.18	9.6e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000014711	-	2348	-	ENSCSAVP00000014545	728 (aa)	-	H2ZAD0
ENSCSAVT00000014713	-	2177	-	ENSCSAVP00000014547	705 (aa)	-	H2ZAD2
ENSCSAVT00000014712	-	2296	-	ENSCSAVP00000014546	711 (aa)	-	H2ZAD1
ENSCSAVT00000014715	-	2151	-	ENSCSAVP00000014549	717 (aa)	-	H2ZAD4
ENSCSAVT00000014714	-	2280	-	ENSCSAVP00000014548	728 (aa)	-	H2ZAD0

Gene Model

Click here to download ENSCSAVG00000008514's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000008514's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000008514	-	99	30.447	ENSCSAVG00000002108	-	99	31.492
ENSCSAVG00000008514	-	78	37.584	ENSCSAVG00000003974	-	90	35.766
ENSCSAVG00000008514	-	59	36.269	ENSCSAVG00000004563	-	59	36.269
ENSCSAVG00000008514	-	60	33.974	ENSCSAVG00000004985	-	53	37.500
ENSCSAVG00000008514	-	77	40.580	ENSCSAVG00000001787	-	77	40.580

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000008514	-	99	59.778	ENSG00000168827	GFM1	100	80.000	Homo_sapiens
ENSCSAVG00000008514	-	97	58.046	ENSAPOG00000016489	gfm1	96	60.921	Acanthochromis_polyacanthus
ENSCSAVG00000008514	-	99	60.055	ENSAMEG00000013542	GFM1	95	60.055	Ailuropoda_melanoleuca
ENSCSAVG00000008514	-	99	55.062	ENSACIG00000014465	gfm1	93	55.062	Amphilophus_citrinellus
ENSCSAVG00000008514	-	99	59.744	ENSAOCG00000006023	gfm1	96	59.639	Amphiprion_ocellaris
ENSCSAVG00000008514	-	99	59.639	ENSAPEG00000024499	gfm1	99	59.388	Amphiprion_percula
ENSCSAVG00000008514	-	99	59.583	ENSATEG00000013789	gfm1	95	59.583	Anabas_testudineus
ENSCSAVG00000008514	-	99	58.890	ENSAPLG00000005022	GFM1	98	58.832	Anas_platyrhynchos
ENSCSAVG00000008514	-	99	59.544	ENSACAG00000006829	GFM1	97	58.872	Anolis_carolinensis
ENSCSAVG00000008514	-	99	59.501	ENSANAG00000035983	GFM1	95	59.501	Aotus_nancymaae
ENSCSAVG00000008514	-	99	59.829	ENSACLG00000016586	gfm1	96	59.716	Astatotilapia_calliptera
ENSCSAVG00000008514	-	99	58.941	ENSAMXG00000013435	gfm1	95	58.889	Astyanax_mexicanus
ENSCSAVG00000008514	-	99	59.778	ENSBTAG00000027795	GFM1	95	59.778	Bos_taurus
ENSCSAVG00000008514	-	98	52.722	WBGene00009246	gfm-1	93	54.000	Caenorhabditis_elegans
ENSCSAVG00000008514	-	99	59.917	ENSCJAG00000000363	GFM1	95	59.917	Callithrix_jacchus
ENSCSAVG00000008514	-	99	60.194	ENSCAFG00000009006	GFM1	99	60.030	Canis_familiaris
ENSCSAVG00000008514	-	99	60.194	ENSCAFG00020005878	GFM1	98	60.194	Canis_lupus_dingo
ENSCSAVG00000008514	-	99	59.917	ENSCHIG00000015220	GFM1	95	59.917	Capra_hircus
ENSCSAVG00000008514	-	99	59.639	ENSTSYG00000002013	GFM1	95	59.639	Carlito_syrichta
ENSCSAVG00000008514	-	99	51.381	ENSCAPG00000005699	GFM1	97	51.381	Cavia_aperea
ENSCSAVG00000008514	-	99	59.917	ENSCPOG00000001194	GFM1	95	59.917	Cavia_porcellus
ENSCSAVG00000008514	-	99	59.778	ENSCCAG00000025561	GFM1	95	59.778	Cebus_capucinus
ENSCSAVG00000008514	-	99	59.805	ENSCATG00000037622	GFM1	95	59.805	Cercocebus_atys
ENSCSAVG00000008514	-	99	60.610	ENSCLAG00000002503	GFM1	95	60.610	Chinchilla_lanigera
ENSCSAVG00000008514	-	99	58.748	ENSCSAG00000012162	GFM1	95	59.471	Chlorocebus_sabaeus
ENSCSAVG00000008514	-	99	53.814	ENSCHOG00000004867	GFM1	95	53.814	Choloepus_hoffmanni
ENSCSAVG00000008514	-	100	59.749	ENSCPBG00000018367	GFM1	94	62.128	Chrysemys_picta_bellii
ENSCSAVG00000008514	-	99	84.952	ENSCING00000011960	-	95	84.952	Ciona_intestinalis
ENSCSAVG00000008514	-	99	59.175	ENSCANG00000031714	GFM1	95	59.749	Colobus_angolensis_palliatus
ENSCSAVG00000008514	-	99	60.194	ENSCGRG00001022095	GFM1	95	60.194	Cricetulus_griseus_chok1gshd
ENSCSAVG00000008514	-	99	60.194	ENSCGRG00000012043	GFM1	95	60.194	Cricetulus_griseus_crigri
ENSCSAVG00000008514	-	99	55.556	ENSCSEG00000017088	gfm1	98	55.989	Cynoglossus_semilaevis
ENSCSAVG00000008514	-	99	60.313	ENSCVAG00000004126	gfm1	98	59.716	Cyprinodon_variegatus
ENSCSAVG00000008514	-	99	58.587	ENSDARG00000063624	gfm1	96	58.587	Danio_rerio
ENSCSAVG00000008514	-	55	56.543	ENSDNOG00000016385	-	99	56.543	Dasypus_novemcinctus
ENSCSAVG00000008514	-	99	59.085	ENSDORG00000014165	Gfm1	95	59.085	Dipodomys_ordii
ENSCSAVG00000008514	-	99	59.639	FBgn0263133	mEFG1	96	59.639	Drosophila_melanogaster
ENSCSAVG00000008514	-	99	55.177	ENSETEG00000019197	GFM1	95	55.694	Echinops_telfairi
ENSCSAVG00000008514	-	96	52.984	ENSEBUG00000012794	gfm1	99	54.911	Eptatretus_burgeri
ENSCSAVG00000008514	-	99	43.983	ENSEEUG00000000429	GFM1	99	43.983	Erinaceus_europaeus
ENSCSAVG00000008514	-	99	57.977	ENSELUG00000014728	gfm1	94	58.807	Esox_lucius
ENSCSAVG00000008514	-	99	59.778	ENSFCAG00000013291	GFM1	95	59.778	Felis_catus
ENSCSAVG00000008514	-	96	57.496	ENSFALG00000007619	GFM1	99	60.030	Ficedula_albicollis
ENSCSAVG00000008514	-	99	60.085	ENSFDAG00000016559	GFM1	95	60.724	Fukomys_damarensis
ENSCSAVG00000008514	-	99	59.687	ENSFHEG00000006091	gfm1	94	60.795	Fundulus_heteroclitus
ENSCSAVG00000008514	-	99	58.840	ENSGMOG00000010161	gfm1	97	60.000	Gadus_morhua
ENSCSAVG00000008514	-	99	58.689	ENSGALG00000009634	GFM1	95	59.375	Gallus_gallus
ENSCSAVG00000008514	-	99	59.687	ENSGAFG00000012527	gfm1	95	59.583	Gambusia_affinis
ENSCSAVG00000008514	-	99	59.861	ENSGACG00000009864	gfm1	95	59.861	Gasterosteus_aculeatus
ENSCSAVG00000008514	-	99	59.778	ENSGGOG00000003085	GFM1	95	59.778	Gorilla_gorilla
ENSCSAVG00000008514	-	99	59.829	ENSHBUG00000002120	gfm1	94	60.653	Haplochromis_burtoni
ENSCSAVG00000008514	-	99	60.333	ENSHGLG00000016855	GFM1	95	60.333	Heterocephalus_glaber_female
ENSCSAVG00000008514	-	99	60.333	ENSHGLG00100013049	GFM1	95	60.333	Heterocephalus_glaber_male
ENSCSAVG00000008514	-	99	59.033	ENSHCOG00000007638	gfm1	95	61.553	Hippocampus_comes
ENSCSAVG00000008514	-	100	57.601	ENSIPUG00000005873	gfm1	94	59.375	Ictalurus_punctatus
ENSCSAVG00000008514	-	99	59.917	ENSSTOG00000010150	GFM1	97	59.917	Ictidomys_tridecemlineatus
ENSCSAVG00000008514	-	99	59.639	ENSJJAG00000016447	Gfm1	95	59.639	Jaculus_jaculus
ENSCSAVG00000008514	-	100	58.159	ENSKMAG00000020768	gfm1	94	60.198	Kryptolebias_marmoratus
ENSCSAVG00000008514	-	98	58.106	ENSLBEG00000021315	gfm1	99	59.429	Labrus_bergylta
ENSCSAVG00000008514	-	99	58.405	ENSLACG00000012295	GFM1	95	59.375	Latimeria_chalumnae
ENSCSAVG00000008514	-	99	55.099	ENSLOCG00000003778	gfm1	96	55.932	Lepisosteus_oculatus
ENSCSAVG00000008514	-	99	59.362	ENSLAFG00000010945	GFM1	99	57.975	Loxodonta_africana
ENSCSAVG00000008514	-	99	59.033	ENSMFAG00000035731	GFM1	95	59.749	Macaca_fascicularis
ENSCSAVG00000008514	-	99	59.033	ENSMMUG00000004961	GFM1	95	59.749	Macaca_mulatta
ENSCSAVG00000008514	-	99	58.748	ENSMNEG00000033245	GFM1	95	59.471	Macaca_nemestrina
ENSCSAVG00000008514	-	99	58.179	ENSMLEG00000030908	GFM1	99	58.209	Mandrillus_leucophaeus
ENSCSAVG00000008514	-	99	59.972	ENSMAMG00000011760	gfm1	94	61.222	Mastacembelus_armatus
ENSCSAVG00000008514	-	99	59.829	ENSMZEG00005016639	gfm1	94	60.653	Maylandia_zebra
ENSCSAVG00000008514	-	100	57.601	ENSMGAG00000010641	GFM1	96	58.635	Meleagris_gallopavo
ENSCSAVG00000008514	-	99	60.194	ENSMAUG00000000611	Gfm1	95	60.194	Mesocricetus_auratus
ENSCSAVG00000008514	-	99	60.055	ENSMICG00000049086	GFM1	95	60.055	Microcebus_murinus
ENSCSAVG00000008514	-	99	60.194	ENSMOCG00000000465	Gfm1	95	60.194	Microtus_ochrogaster
ENSCSAVG00000008514	-	99	59.227	ENSMMOG00000012538	gfm1	95	60.085	Mola_mola
ENSCSAVG00000008514	-	100	59.135	ENSMODG00000015673	GFM1	94	61.560	Monodelphis_domestica
ENSCSAVG00000008514	-	99	60.556	ENSMALG00000012508	gfm1	95	60.556	Monopterus_albus
ENSCSAVG00000008514	-	99	59.778	MGP_CAROLIEiJ_G0025052	Gfm1	95	59.778	Mus_caroli
ENSCSAVG00000008514	-	99	60.333	ENSMUSG00000027774	Gfm1	95	60.333	Mus_musculus
ENSCSAVG00000008514	-	99	60.194	MGP_PahariEiJ_G0026495	Gfm1	94	61.341	Mus_pahari
ENSCSAVG00000008514	-	99	60.333	MGP_SPRETEiJ_G0025994	Gfm1	95	60.333	Mus_spretus
ENSCSAVG00000008514	-	99	60.610	ENSMPUG00000002859	GFM1	95	60.864	Mustela_putorius_furo
ENSCSAVG00000008514	-	99	59.501	ENSMLUG00000000452	GFM1	95	59.501	Myotis_lucifugus
ENSCSAVG00000008514	-	99	60.111	ENSNGAG00000012375	Gfm1	95	60.111	Nannospalax_galili
ENSCSAVG00000008514	-	99	59.544	ENSNBRG00000004631	gfm1	96	60.369	Neolamprologus_brichardi
ENSCSAVG00000008514	-	99	59.917	ENSNLEG00000004176	GFM1	95	59.917	Nomascus_leucogenys
ENSCSAVG00000008514	-	96	52.098	ENSMEUG00000007784	GFM1	99	53.421	Notamacropus_eugenii
ENSCSAVG00000008514	-	99	59.444	ENSOPRG00000009860	GFM1	96	59.444	Ochotona_princeps
ENSCSAVG00000008514	-	99	60.472	ENSODEG00000004316	GFM1	95	60.472	Octodon_degus
ENSCSAVG00000008514	-	99	59.829	ENSONIG00000003772	gfm1	94	60.653	Oreochromis_niloticus
ENSCSAVG00000008514	-	99	59.917	ENSOCUG00000013561	GFM1	95	59.917	Oryctolagus_cuniculus
ENSCSAVG00000008514	-	100	57.880	ENSORLG00000006487	gfm1	99	59.659	Oryzias_latipes
ENSCSAVG00000008514	-	99	58.889	ENSORLG00020003362	gfm1	95	58.889	Oryzias_latipes_hni
ENSCSAVG00000008514	-	99	58.750	ENSORLG00015005829	gfm1	95	58.750	Oryzias_latipes_hsok
ENSCSAVG00000008514	-	99	59.402	ENSOMEG00000012894	gfm1	95	59.306	Oryzias_melastigma
ENSCSAVG00000008514	-	99	59.778	ENSOGAG00000008298	GFM1	95	59.778	Otolemur_garnettii
ENSCSAVG00000008514	-	99	59.392	ENSOARG00000002409	GFM1	99	59.392	Ovis_aries
ENSCSAVG00000008514	-	99	59.778	ENSPPAG00000033881	GFM1	95	59.778	Pan_paniscus
ENSCSAVG00000008514	-	99	59.778	ENSPPRG00000009281	GFM1	95	59.778	Panthera_pardus
ENSCSAVG00000008514	-	99	59.778	ENSPTIG00000012416	GFM1	95	59.778	Panthera_tigris_altaica
ENSCSAVG00000008514	-	99	59.778	ENSPTRG00000015570	GFM1	95	59.778	Pan_troglodytes
ENSCSAVG00000008514	-	99	59.033	ENSPANG00000016512	GFM1	95	59.749	Papio_anubis
ENSCSAVG00000008514	-	99	59.167	ENSPKIG00000004876	gfm1	95	59.167	Paramormyrops_kingsleyae
ENSCSAVG00000008514	-	100	58.717	ENSPSIG00000012567	GFM1	94	61.080	Pelodiscus_sinensis
ENSCSAVG00000008514	-	99	58.974	ENSPMGG00000014068	gfm1	98	59.249	Periophthalmus_magnuspinnatus
ENSCSAVG00000008514	-	99	60.055	ENSPEMG00000008942	Gfm1	95	60.055	Peromyscus_maniculatus_bairdii
ENSCSAVG00000008514	-	86	58.699	ENSPCIG00000020195	GFM1	91	61.815	Phascolarctos_cinereus
ENSCSAVG00000008514	-	99	59.583	ENSPFOG00000011022	gfm1	95	59.583	Poecilia_formosa
ENSCSAVG00000008514	-	99	59.444	ENSPLAG00000019585	gfm1	96	59.507	Poecilia_latipinna
ENSCSAVG00000008514	-	99	59.444	ENSPMEG00000012376	gfm1	95	59.444	Poecilia_mexicana
ENSCSAVG00000008514	-	99	59.167	ENSPREG00000001332	gfm1	91	59.167	Poecilia_reticulata
ENSCSAVG00000008514	-	99	59.639	ENSPPYG00000014244	GFM1	95	59.639	Pongo_abelii
ENSCSAVG00000008514	-	99	56.443	ENSPCAG00000008934	GFM1	99	58.429	Procavia_capensis
ENSCSAVG00000008514	-	99	60.055	ENSPCOG00000022259	GFM1	95	60.055	Propithecus_coquereli
ENSCSAVG00000008514	-	99	59.917	ENSPVAG00000013605	GFM1	95	59.917	Pteropus_vampyrus
ENSCSAVG00000008514	-	99	59.687	ENSPNYG00000006037	gfm1	95	60.511	Pundamilia_nyererei
ENSCSAVG00000008514	-	100	58.717	ENSPNAG00000001237	gfm1	96	59.583	Pygocentrus_nattereri
ENSCSAVG00000008514	-	99	60.194	ENSRNOG00000012873	Gfm1	95	60.194	Rattus_norvegicus
ENSCSAVG00000008514	-	99	58.890	ENSRBIG00000031363	GFM1	95	59.610	Rhinopithecus_bieti
ENSCSAVG00000008514	-	99	59.033	ENSRROG00000031081	GFM1	95	59.749	Rhinopithecus_roxellana
ENSCSAVG00000008514	-	99	52.507	YLR069C	-	90	54.089	Saccharomyces_cerevisiae
ENSCSAVG00000008514	-	99	59.917	ENSSBOG00000023252	GFM1	95	59.917	Saimiri_boliviensis_boliviensis
ENSCSAVG00000008514	-	100	58.856	ENSSHAG00000017772	GFM1	94	61.222	Sarcophilus_harrisii
ENSCSAVG00000008514	-	99	59.544	ENSSFOG00015003117	gfm1	97	59.944	Scleropages_formosus
ENSCSAVG00000008514	-	99	59.444	ENSSMAG00000013221	gfm1	95	59.444	Scophthalmus_maximus
ENSCSAVG00000008514	-	99	59.544	ENSSDUG00000018665	gfm1	94	60.482	Seriola_dumerili
ENSCSAVG00000008514	-	99	59.544	ENSSLDG00000020606	gfm1	94	60.482	Seriola_lalandi_dorsalis
ENSCSAVG00000008514	-	100	57.880	ENSSPUG00000018686	GFM1	97	58.322	Sphenodon_punctatus
ENSCSAVG00000008514	-	99	60.139	ENSSPAG00000008800	gfm1	95	60.139	Stegastes_partitus
ENSCSAVG00000008514	-	99	60.055	ENSSSCG00000025651	GFM1	95	60.055	Sus_scrofa
ENSCSAVG00000008514	-	99	59.972	ENSTRUG00000009244	gfm1	94	60.938	Takifugu_rubripes
ENSCSAVG00000008514	-	99	59.829	ENSTNIG00000007729	gfm1	95	59.722	Tetraodon_nigroviridis
ENSCSAVG00000008514	-	95	52.915	ENSTBEG00000017404	GFM1	89	55.506	Tupaia_belangeri
ENSCSAVG00000008514	-	99	59.085	ENSTTRG00000001735	GFM1	94	59.085	Tursiops_truncatus
ENSCSAVG00000008514	-	99	60.055	ENSUAMG00000026381	GFM1	95	60.055	Ursus_americanus
ENSCSAVG00000008514	-	99	60.055	ENSUMAG00000011268	GFM1	95	60.055	Ursus_maritimus
ENSCSAVG00000008514	-	99	58.547	ENSVPAG00000009444	GFM1	95	57.559	Vicugna_pacos
ENSCSAVG00000008514	-	99	59.917	ENSVVUG00000020091	GFM1	99	59.733	Vulpes_vulpes
ENSCSAVG00000008514	-	100	59.554	ENSXETG00000032551	GFM1	95	61.142	Xenopus_tropicalis
ENSCSAVG00000008514	-	53	60.743	ENSXCOG00000012590	gfm1	90	58.883	Xiphophorus_couchianus
ENSCSAVG00000008514	-	99	59.028	ENSXMAG00000000261	gfm1	95	59.028	Xiphophorus_maculatus