EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000008584 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 29999 bases
Position: chrreftig_77:3174900-3204898
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000014690	XRN_N	PF03159.18	9.1e-98	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000014858	-	3783	-	ENSCSAVP00000014690	1261 (aa)	-	H2ZAS5
ENSCSAVT00000014859	-	741	-	ENSCSAVP00000014691	235 (aa)	-	H2ZAS6

Gene Model

Click here to download ENSCSAVG00000008584's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000008584's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000008584	-	98	44.917	ENSG00000114127	XRN1	96	86.408	Homo_sapiens
ENSCSAVG00000008584	-	93	50.305	ENSAPOG00000000622	xrn1	93	56.223	Acanthochromis_polyacanthus
ENSCSAVG00000008584	-	98	44.868	ENSAMEG00000012538	XRN1	69	45.179	Ailuropoda_melanoleuca
ENSCSAVG00000008584	-	93	50.349	ENSACIG00000001057	xrn1	73	50.349	Amphilophus_citrinellus
ENSCSAVG00000008584	-	93	50.450	ENSAOCG00000014097	xrn1	98	54.059	Amphiprion_ocellaris
ENSCSAVG00000008584	-	93	50.100	ENSAPEG00000006620	xrn1	76	50.200	Amphiprion_percula
ENSCSAVG00000008584	-	94	49.055	ENSATEG00000009752	xrn1	76	48.904	Anabas_testudineus
ENSCSAVG00000008584	-	96	44.010	ENSAPLG00000004905	XRN1	68	44.205	Anas_platyrhynchos
ENSCSAVG00000008584	-	98	45.067	ENSACAG00000004985	XRN1	67	45.304	Anolis_carolinensis
ENSCSAVG00000008584	-	98	44.505	ENSANAG00000029013	XRN1	99	45.462	Aotus_nancymaae
ENSCSAVG00000008584	-	93	51.096	ENSACLG00000004806	xrn1	69	51.295	Astatotilapia_calliptera
ENSCSAVG00000008584	-	94	48.998	ENSAMXG00000019370	xrn1	95	87.379	Astyanax_mexicanus
ENSCSAVG00000008584	-	98	44.895	ENSBTAG00000011524	XRN1	70	45.207	Bos_taurus
ENSCSAVG00000008584	-	76	37.226	WBGene00012730	xrn-1	67	37.226	Caenorhabditis_elegans
ENSCSAVG00000008584	-	98	44.453	ENSCJAG00000001872	XRN1	73	44.930	Callithrix_jacchus
ENSCSAVG00000008584	-	98	44.884	ENSCAFG00000007783	XRN1	71	45.039	Canis_familiaris
ENSCSAVG00000008584	-	98	44.556	ENSCAFG00020009120	XRN1	84	59.625	Canis_lupus_dingo
ENSCSAVG00000008584	-	98	44.817	ENSCHIG00000019192	XRN1	69	45.121	Capra_hircus
ENSCSAVG00000008584	-	98	44.836	ENSTSYG00000002705	XRN1	70	45.305	Carlito_syrichta
ENSCSAVG00000008584	-	60	48.036	ENSCAPG00000004604	-	85	47.027	Cavia_aperea
ENSCSAVG00000008584	-	98	44.496	ENSCCAG00000034800	XRN1	84	61.368	Cebus_capucinus
ENSCSAVG00000008584	-	98	44.739	ENSCATG00000041794	XRN1	71	45.327	Cercocebus_atys
ENSCSAVG00000008584	-	98	44.895	ENSCLAG00000001451	XRN1	84	61.026	Chinchilla_lanigera
ENSCSAVG00000008584	-	98	44.739	ENSCSAG00000011265	XRN1	70	45.327	Chlorocebus_sabaeus
ENSCSAVG00000008584	-	98	45.070	ENSCANG00000037495	XRN1	84	61.368	Colobus_angolensis_palliatus
ENSCSAVG00000008584	-	98	44.914	ENSCGRG00001019411	Xrn1	84	61.538	Cricetulus_griseus_chok1gshd
ENSCSAVG00000008584	-	98	44.914	ENSCGRG00000012464	Xrn1	84	61.538	Cricetulus_griseus_crigri
ENSCSAVG00000008584	-	88	50.398	ENSCSEG00000021285	xrn1	94	86.538	Cynoglossus_semilaevis
ENSCSAVG00000008584	-	86	51.025	ENSCVAG00000013089	xrn1	96	51.434	Cyprinodon_variegatus
ENSCSAVG00000008584	-	91	51.195	ENSDARG00000091652	xrn1	98	58.351	Danio_rerio
ENSCSAVG00000008584	-	91	50.596	ENSDORG00000013833	Xrn1	69	50.795	Dipodomys_ordii
ENSCSAVG00000008584	-	76	41.540	FBgn0020261	pcm	59	41.667	Drosophila_melanogaster
ENSCSAVG00000008584	-	98	45.051	ENSEASG00005002687	XRN1	84	61.054	Equus_asinus_asinus
ENSCSAVG00000008584	-	98	44.919	ENSECAG00000008301	XRN1	70	44.958	Equus_caballus
ENSCSAVG00000008584	-	70	61.285	ENSEEUG00000011323	XRN1	53	62.676	Erinaceus_europaeus
ENSCSAVG00000008584	-	94	50.891	ENSELUG00000000169	xrn1	69	50.990	Esox_lucius
ENSCSAVG00000008584	-	86	47.557	ENSFCAG00000027589	XRN1	98	62.335	Felis_catus
ENSCSAVG00000008584	-	98	45.625	ENSFALG00000007021	XRN1	67	45.859	Ficedula_albicollis
ENSCSAVG00000008584	-	98	45.093	ENSFDAG00000020494	XRN1	84	61.538	Fukomys_damarensis
ENSCSAVG00000008584	-	92	51.277	ENSGMOG00000006396	xrn1	67	51.531	Gadus_morhua
ENSCSAVG00000008584	-	98	44.887	ENSGALG00000002706	XRN1	67	45.121	Gallus_gallus
ENSCSAVG00000008584	-	91	49.552	ENSGACG00000014328	xrn1	67	49.652	Gasterosteus_aculeatus
ENSCSAVG00000008584	-	99	44.488	ENSGAGG00000017535	XRN1	72	44.410	Gopherus_agassizii
ENSCSAVG00000008584	-	98	44.681	ENSGGOG00000008047	XRN1	70	44.847	Gorilla_gorilla
ENSCSAVG00000008584	-	93	50.896	ENSHBUG00000005908	xrn1	95	58.263	Haplochromis_burtoni
ENSCSAVG00000008584	-	98	45.234	ENSHGLG00000014476	XRN1	84	61.538	Heterocephalus_glaber_female
ENSCSAVG00000008584	-	98	45.234	ENSHGLG00100015130	XRN1	84	61.538	Heterocephalus_glaber_male
ENSCSAVG00000008584	-	94	49.551	ENSHCOG00000014062	xrn1	75	50.199	Hippocampus_comes
ENSCSAVG00000008584	-	93	50.250	ENSIPUG00000015229	xrn1	71	50.250	Ictalurus_punctatus
ENSCSAVG00000008584	-	98	45.192	ENSSTOG00000013552	XRN1	84	61.395	Ictidomys_tridecemlineatus
ENSCSAVG00000008584	-	96	43.384	ENSJJAG00000010863	Xrn1	83	59.034	Jaculus_jaculus
ENSCSAVG00000008584	-	93	50.820	ENSKMAG00000021356	xrn1	99	56.033	Kryptolebias_marmoratus
ENSCSAVG00000008584	-	93	51.327	ENSLBEG00000018656	xrn1	97	87.379	Labrus_bergylta
ENSCSAVG00000008584	-	98	45.788	ENSLACG00000009020	XRN1	69	45.788	Latimeria_chalumnae
ENSCSAVG00000008584	-	99	45.209	ENSLOCG00000007944	xrn1	71	45.370	Lepisosteus_oculatus
ENSCSAVG00000008584	-	76	50.847	ENSLAFG00000015426	XRN1	99	54.135	Loxodonta_africana
ENSCSAVG00000008584	-	98	44.739	ENSMFAG00000032599	XRN1	71	45.171	Macaca_fascicularis
ENSCSAVG00000008584	-	98	44.739	ENSMMUG00000014038	XRN1	71	45.327	Macaca_mulatta
ENSCSAVG00000008584	-	98	44.669	ENSMNEG00000034217	XRN1	71	45.093	Macaca_nemestrina
ENSCSAVG00000008584	-	93	51.548	ENSMAMG00000013219	xrn1	92	60.043	Mastacembelus_armatus
ENSCSAVG00000008584	-	93	50.996	ENSMZEG00005015099	xrn1	69	50.996	Maylandia_zebra
ENSCSAVG00000008584	-	96	42.903	ENSMGAG00000006333	XRN1	68	43.108	Meleagris_gallopavo
ENSCSAVG00000008584	-	98	45.106	ENSMICG00000048948	XRN1	96	86.408	Microcebus_murinus
ENSCSAVG00000008584	-	62	61.026	ENSMOCG00000008665	Xrn1	83	61.026	Microtus_ochrogaster
ENSCSAVG00000008584	-	98	44.868	ENSMODG00000021236	XRN1	70	45.101	Monodelphis_domestica
ENSCSAVG00000008584	-	100	42.113	ENSMALG00000004098	xrn1	72	42.496	Monopterus_albus
ENSCSAVG00000008584	-	90	61.905	MGP_CAROLIEiJ_G0032535	Xrn1	100	85.000	Mus_caroli
ENSCSAVG00000008584	-	98	44.796	ENSMUSG00000032410	Xrn1	100	85.000	Mus_musculus
ENSCSAVG00000008584	-	87	51.093	MGP_PahariEiJ_G0015404	Xrn1	100	85.000	Mus_pahari
ENSCSAVG00000008584	-	98	44.950	MGP_SPRETEiJ_G0033678	Xrn1	100	85.000	Mus_spretus
ENSCSAVG00000008584	-	98	44.774	ENSMPUG00000012040	XRN1	70	45.164	Mustela_putorius_furo
ENSCSAVG00000008584	-	98	44.809	ENSMLUG00000016885	XRN1	69	45.234	Myotis_lucifugus
ENSCSAVG00000008584	-	62	57.607	ENSNGAG00000023964	Xrn1	84	57.534	Nannospalax_galili
ENSCSAVG00000008584	-	98	44.874	ENSNLEG00000004726	XRN1	71	45.207	Nomascus_leucogenys
ENSCSAVG00000008584	-	93	50.896	ENSONIG00000016673	xrn1	78	50.896	Oreochromis_niloticus
ENSCSAVG00000008584	-	87	40.227	ENSOANG00000006735	XRN1	67	40.453	Ornithorhynchus_anatinus
ENSCSAVG00000008584	-	99	44.804	ENSOCUG00000001861	XRN1	69	44.992	Oryctolagus_cuniculus
ENSCSAVG00000008584	-	93	51.616	ENSORLG00000013005	xrn1	72	51.515	Oryzias_latipes
ENSCSAVG00000008584	-	93	51.626	ENSORLG00020005559	xrn1	72	51.626	Oryzias_latipes_hni
ENSCSAVG00000008584	-	93	51.524	ENSORLG00015022523	xrn1	75	51.524	Oryzias_latipes_hsok
ENSCSAVG00000008584	-	93	50.856	ENSOMEG00000015397	xrn1	75	51.060	Oryzias_melastigma
ENSCSAVG00000008584	-	98	43.258	ENSOGAG00000000170	XRN1	70	43.604	Otolemur_garnettii
ENSCSAVG00000008584	-	98	44.895	ENSOARG00000006343	XRN1	70	45.199	Ovis_aries
ENSCSAVG00000008584	-	98	44.917	ENSPPAG00000010180	XRN1	70	45.083	Pan_paniscus
ENSCSAVG00000008584	-	98	45.000	ENSPPRG00000007125	XRN1	70	45.242	Panthera_pardus
ENSCSAVG00000008584	-	98	45.086	ENSPTIG00000021081	XRN1	70	45.320	Panthera_tigris_altaica
ENSCSAVG00000008584	-	98	44.917	ENSPTRG00000015482	XRN1	70	45.154	Pan_troglodytes
ENSCSAVG00000008584	-	98	44.739	ENSPANG00000010638	XRN1	71	45.327	Papio_anubis
ENSCSAVG00000008584	-	98	44.766	ENSPSIG00000018050	XRN1	68	45.078	Pelodiscus_sinensis
ENSCSAVG00000008584	-	61	63.492	ENSPMGG00000002648	xrn1	82	63.845	Periophthalmus_magnuspinnatus
ENSCSAVG00000008584	-	62	61.026	ENSPEMG00000020610	Xrn1	84	61.197	Peromyscus_maniculatus_bairdii
ENSCSAVG00000008584	-	82	69.429	ENSPMAG00000002975	xrn1	91	69.429	Petromyzon_marinus
ENSCSAVG00000008584	-	98	45.253	ENSPCIG00000028735	XRN1	86	62.261	Phascolarctos_cinereus
ENSCSAVG00000008584	-	93	50.150	ENSPFOG00000013932	xrn1	77	50.249	Poecilia_formosa
ENSCSAVG00000008584	-	93	50.151	ENSPLAG00000021653	xrn1	76	50.151	Poecilia_latipinna
ENSCSAVG00000008584	-	93	49.802	ENSPMEG00000003076	xrn1	75	50.301	Poecilia_mexicana
ENSCSAVG00000008584	-	91	49.850	ENSPREG00000021147	xrn1	71	49.197	Poecilia_reticulata
ENSCSAVG00000008584	-	98	44.646	ENSPPYG00000014172	XRN1	70	45.240	Pongo_abelii
ENSCSAVG00000008584	-	77	59.450	ENSPCAG00000005638	XRN1	70	59.633	Procavia_capensis
ENSCSAVG00000008584	-	98	45.055	ENSPCOG00000013089	XRN1	84	61.538	Propithecus_coquereli
ENSCSAVG00000008584	-	71	72.965	ENSPVAG00000016265	XRN1	63	72.965	Pteropus_vampyrus
ENSCSAVG00000008584	-	93	51.693	ENSPNYG00000010570	xrn1	71	51.098	Pundamilia_nyererei
ENSCSAVG00000008584	-	94	48.152	ENSPNAG00000023531	xrn1	71	48.204	Pygocentrus_nattereri
ENSCSAVG00000008584	-	87	50.649	ENSRNOG00000042951	Xrn1	68	50.749	Rattus_norvegicus
ENSCSAVG00000008584	-	98	44.809	ENSRBIG00000041227	XRN1	71	45.016	Rhinopithecus_bieti
ENSCSAVG00000008584	-	76	34.296	YGL173C	XRN1	69	34.483	Saccharomyces_cerevisiae
ENSCSAVG00000008584	-	98	44.806	ENSSBOG00000029561	XRN1	71	45.271	Saimiri_boliviensis_boliviensis
ENSCSAVG00000008584	-	96	43.651	ENSSHAG00000016207	XRN1	69	44.171	Sarcophilus_harrisii
ENSCSAVG00000008584	-	93	50.554	ENSSFOG00015024211	xrn1	71	51.057	Scleropages_formosus
ENSCSAVG00000008584	-	93	49.950	ENSSMAG00000016534	xrn1	74	50.050	Scophthalmus_maximus
ENSCSAVG00000008584	-	93	50.302	ENSSDUG00000010306	xrn1	75	50.504	Seriola_dumerili
ENSCSAVG00000008584	-	93	50.250	ENSSLDG00000021543	xrn1	75	50.200	Seriola_lalandi_dorsalis
ENSCSAVG00000008584	-	74	46.497	ENSSARG00000007741	-	71	46.524	Sorex_araneus
ENSCSAVG00000008584	-	98	45.184	ENSTGUG00000008498	XRN1	70	45.419	Taeniopygia_guttata
ENSCSAVG00000008584	-	93	49.697	ENSTRUG00000004895	xrn1	96	58.785	Takifugu_rubripes
ENSCSAVG00000008584	-	93	49.395	ENSTNIG00000017615	xrn1	71	50.200	Tetraodon_nigroviridis
ENSCSAVG00000008584	-	76	70.604	ENSTBEG00000003256	XRN1	55	70.604	Tupaia_belangeri
ENSCSAVG00000008584	-	84	50.000	ENSTTRG00000012914	XRN1	70	43.136	Tursiops_truncatus
ENSCSAVG00000008584	-	98	43.927	ENSUAMG00000001608	XRN1	84	58.092	Ursus_americanus
ENSCSAVG00000008584	-	98	44.731	ENSUMAG00000013625	XRN1	70	44.973	Ursus_maritimus
ENSCSAVG00000008584	-	83	50.797	ENSVPAG00000004690	XRN1	63	50.797	Vicugna_pacos
ENSCSAVG00000008584	-	98	45.298	ENSVVUG00000024461	XRN1	99	57.759	Vulpes_vulpes
ENSCSAVG00000008584	-	86	50.000	ENSXETG00000000619	xrn1	96	71.545	Xenopus_tropicalis
ENSCSAVG00000008584	-	91	51.127	ENSXCOG00000007917	xrn1	69	51.127	Xiphophorus_couchianus
ENSCSAVG00000008584	-	93	50.508	ENSXMAG00000018320	xrn1	74	51.022	Xiphophorus_maculatus