EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000008623 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 18097 bases
Position: chrreftig_19:1821149-1839245
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000014745	Xpo1	PF08389.12	2.3e-21	1	1
ENSCSAVP00000014744	Xpo1	PF08389.12	2.6e-21	1	1
ENSCSAVP00000014743	Xpo1	PF08389.12	2.9e-21	1	1
ENSCSAVP00000014743	IBN_N	PF03810.19	4.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000014917	-	2817	-	ENSCSAVP00000014745	925 (aa)	-	H2ZAY0
ENSCSAVT00000014916	-	2972	-	ENSCSAVP00000014744	914 (aa)	-	H2ZAX9
ENSCSAVT00000014915	-	1230	-	ENSCSAVP00000014743	290 (aa)	-	H2ZAX8

Gene Model

Click here to download ENSCSAVG00000008623's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000008623's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000008623	-	94	54.182	ENSG00000064419	TNPO3	99	47.219	Homo_sapiens
ENSCSAVG00000008623	-	94	54.909	ENSAPOG00000018347	tnpo3	99	47.655	Acanthochromis_polyacanthus
ENSCSAVG00000008623	-	94	54.182	ENSAMEG00000005135	TNPO3	97	45.877	Ailuropoda_melanoleuca
ENSCSAVG00000008623	-	96	45.885	ENSACIG00000005897	tnpo3	99	45.885	Amphilophus_citrinellus
ENSCSAVG00000008623	-	94	55.273	ENSAOCG00000008264	tnpo3	99	47.874	Amphiprion_ocellaris
ENSCSAVG00000008623	-	96	47.125	ENSAPEG00000024300	tnpo3	100	47.125	Amphiprion_percula
ENSCSAVG00000008623	-	94	54.909	ENSATEG00000003197	tnpo3	99	47.764	Anabas_testudineus
ENSCSAVG00000008623	-	86	50.199	ENSAPLG00000005946	TNPO3	83	46.972	Anas_platyrhynchos
ENSCSAVG00000008623	-	92	54.104	ENSACAG00000013470	TNPO3	95	48.627	Anolis_carolinensis
ENSCSAVG00000008623	-	94	53.818	ENSANAG00000037940	TNPO3	99	47.110	Aotus_nancymaae
ENSCSAVG00000008623	-	94	54.909	ENSACLG00000005561	tnpo3	99	47.874	Astatotilapia_calliptera
ENSCSAVG00000008623	-	94	53.818	ENSAMXG00000016236	tnpo3	99	47.437	Astyanax_mexicanus
ENSCSAVG00000008623	-	94	54.182	ENSBTAG00000004992	TNPO3	99	47.110	Bos_taurus
ENSCSAVG00000008623	-	94	54.182	ENSCJAG00000018085	TNPO3	99	47.110	Callithrix_jacchus
ENSCSAVG00000008623	-	94	54.182	ENSCAFG00000001543	TNPO3	99	47.219	Canis_familiaris
ENSCSAVG00000008623	-	94	54.182	ENSCAFG00020022462	TNPO3	98	47.014	Canis_lupus_dingo
ENSCSAVG00000008623	-	94	54.182	ENSCHIG00000011721	TNPO3	99	47.110	Capra_hircus
ENSCSAVG00000008623	-	94	54.182	ENSTSYG00000002989	TNPO3	99	47.219	Carlito_syrichta
ENSCSAVG00000008623	-	66	54.630	ENSCAPG00000005843	TNPO3	91	54.630	Cavia_aperea
ENSCSAVG00000008623	-	94	54.182	ENSCPOG00000039784	TNPO3	99	47.001	Cavia_porcellus
ENSCSAVG00000008623	-	94	54.182	ENSCCAG00000033826	TNPO3	99	47.219	Cebus_capucinus
ENSCSAVG00000008623	-	94	54.182	ENSCATG00000030018	TNPO3	99	47.219	Cercocebus_atys
ENSCSAVG00000008623	-	94	54.182	ENSCLAG00000016298	TNPO3	99	46.688	Chinchilla_lanigera
ENSCSAVG00000008623	-	94	54.182	ENSCSAG00000009966	TNPO3	99	47.219	Chlorocebus_sabaeus
ENSCSAVG00000008623	-	56	66.667	ENSCHOG00000011547	TNPO3	86	35.628	Choloepus_hoffmanni
ENSCSAVG00000008623	-	93	45.993	ENSCPBG00000017497	TNPO3	100	45.993	Chrysemys_picta_bellii
ENSCSAVG00000008623	-	100	85.616	ENSCING00000005042	-	99	84.848	Ciona_intestinalis
ENSCSAVG00000008623	-	94	54.182	ENSCANG00000033070	TNPO3	99	47.219	Colobus_angolensis_palliatus
ENSCSAVG00000008623	-	94	54.182	ENSCGRG00001015925	Tnpo3	99	47.219	Cricetulus_griseus_chok1gshd
ENSCSAVG00000008623	-	94	54.182	ENSCGRG00000010379	Tnpo3	99	47.219	Cricetulus_griseus_crigri
ENSCSAVG00000008623	-	94	54.545	ENSCSEG00000005952	tnpo3	96	53.207	Cynoglossus_semilaevis
ENSCSAVG00000008623	-	95	55.235	ENSCVAG00000020285	tnpo3	99	48.205	Cyprinodon_variegatus
ENSCSAVG00000008623	-	94	54.545	ENSDARG00000045680	tnpo3	99	48.092	Danio_rerio
ENSCSAVG00000008623	-	94	54.182	ENSDNOG00000002556	TNPO3	99	47.219	Dasypus_novemcinctus
ENSCSAVG00000008623	-	94	54.182	ENSDORG00000002433	Tnpo3	91	50.540	Dipodomys_ordii
ENSCSAVG00000008623	-	99	37.972	FBgn0031456	Tnpo-SR	99	37.972	Drosophila_melanogaster
ENSCSAVG00000008623	-	94	54.182	ENSETEG00000002101	TNPO3	89	52.928	Echinops_telfairi
ENSCSAVG00000008623	-	94	54.545	ENSEBUG00000016931	tnpo3	99	48.310	Eptatretus_burgeri
ENSCSAVG00000008623	-	94	54.182	ENSEASG00005008677	TNPO3	99	47.219	Equus_asinus_asinus
ENSCSAVG00000008623	-	94	54.182	ENSECAG00000012815	TNPO3	99	47.219	Equus_caballus
ENSCSAVG00000008623	-	94	52.727	ENSEEUG00000005178	TNPO3	97	45.075	Erinaceus_europaeus
ENSCSAVG00000008623	-	94	56.000	ENSELUG00000012153	tnpo3	99	48.201	Esox_lucius
ENSCSAVG00000008623	-	94	54.182	ENSFCAG00000018186	TNPO3	99	47.219	Felis_catus
ENSCSAVG00000008623	-	96	45.333	ENSFALG00000010667	TNPO3	100	45.333	Ficedula_albicollis
ENSCSAVG00000008623	-	94	54.182	ENSFDAG00000019578	TNPO3	99	47.225	Fukomys_damarensis
ENSCSAVG00000008623	-	98	53.873	ENSFHEG00000012859	tnpo3	100	47.840	Fundulus_heteroclitus
ENSCSAVG00000008623	-	94	55.636	ENSGMOG00000007324	tnpo3	99	48.310	Gadus_morhua
ENSCSAVG00000008623	-	94	54.182	ENSGALG00000039420	TNPO3	97	50.270	Gallus_gallus
ENSCSAVG00000008623	-	95	53.791	ENSGAFG00000017639	tnpo3	97	54.417	Gambusia_affinis
ENSCSAVG00000008623	-	96	54.839	ENSGACG00000000699	tnpo3	99	47.557	Gasterosteus_aculeatus
ENSCSAVG00000008623	-	93	46.109	ENSGAGG00000006777	TNPO3	100	46.109	Gopherus_agassizii
ENSCSAVG00000008623	-	94	54.182	ENSGGOG00000008339	TNPO3	99	47.219	Gorilla_gorilla
ENSCSAVG00000008623	-	94	54.909	ENSHBUG00000008351	tnpo3	99	47.874	Haplochromis_burtoni
ENSCSAVG00000008623	-	94	54.182	ENSHGLG00000004463	TNPO3	99	47.219	Heterocephalus_glaber_female
ENSCSAVG00000008623	-	94	54.182	ENSHGLG00100005509	TNPO3	99	47.219	Heterocephalus_glaber_male
ENSCSAVG00000008623	-	94	53.455	ENSHCOG00000007221	tnpo3	99	47.764	Hippocampus_comes
ENSCSAVG00000008623	-	94	54.182	ENSIPUG00000014979	TNPO3	99	47.874	Ictalurus_punctatus
ENSCSAVG00000008623	-	94	54.182	ENSSTOG00000004885	TNPO3	99	47.219	Ictidomys_tridecemlineatus
ENSCSAVG00000008623	-	99	43.974	ENSJJAG00000013530	Tnpo3	99	43.831	Jaculus_jaculus
ENSCSAVG00000008623	-	94	54.545	ENSKMAG00000010497	tnpo3	99	47.546	Kryptolebias_marmoratus
ENSCSAVG00000008623	-	96	45.209	ENSLBEG00000016595	tnpo3	100	45.209	Labrus_bergylta
ENSCSAVG00000008623	-	96	44.457	ENSLBEG00000011988	-	99	44.457	Labrus_bergylta
ENSCSAVG00000008623	-	83	58.791	ENSLACG00000002351	TNPO3	99	58.791	Latimeria_chalumnae
ENSCSAVG00000008623	-	94	55.273	ENSLOCG00000015556	tnpo3	99	47.874	Lepisosteus_oculatus
ENSCSAVG00000008623	-	94	54.182	ENSLAFG00000002738	TNPO3	99	47.014	Loxodonta_africana
ENSCSAVG00000008623	-	94	54.182	ENSMFAG00000032385	TNPO3	99	47.219	Macaca_fascicularis
ENSCSAVG00000008623	-	94	54.182	ENSMMUG00000004311	TNPO3	99	47.219	Macaca_mulatta
ENSCSAVG00000008623	-	94	54.182	ENSMNEG00000045277	TNPO3	99	47.219	Macaca_nemestrina
ENSCSAVG00000008623	-	94	54.182	ENSMLEG00000037881	TNPO3	99	47.219	Mandrillus_leucophaeus
ENSCSAVG00000008623	-	94	56.000	ENSMAMG00000021096	tnpo3	99	48.092	Mastacembelus_armatus
ENSCSAVG00000008623	-	94	54.909	ENSMZEG00005015084	tnpo3	99	47.874	Maylandia_zebra
ENSCSAVG00000008623	-	84	52.653	ENSMGAG00000002839	TNPO3	99	47.469	Meleagris_gallopavo
ENSCSAVG00000008623	-	94	54.182	ENSMAUG00000013463	Tnpo3	99	47.219	Mesocricetus_auratus
ENSCSAVG00000008623	-	85	37.273	ENSMICG00000011003	IPO13	95	33.889	Microcebus_murinus
ENSCSAVG00000008623	-	94	54.182	ENSMICG00000000140	TNPO3	99	47.219	Microcebus_murinus
ENSCSAVG00000008623	-	94	54.545	ENSMOCG00000013264	Tnpo3	99	47.219	Microtus_ochrogaster
ENSCSAVG00000008623	-	96	53.405	ENSMMOG00000005887	tnpo3	99	47.231	Mola_mola
ENSCSAVG00000008623	-	94	54.545	ENSMODG00000014700	TNPO3	99	47.764	Monodelphis_domestica
ENSCSAVG00000008623	-	94	54.545	ENSMALG00000006675	tnpo3	99	47.328	Monopterus_albus
ENSCSAVG00000008623	-	94	54.182	MGP_CAROLIEiJ_G0028176	Tnpo3	99	47.110	Mus_caroli
ENSCSAVG00000008623	-	94	54.182	ENSMUSG00000012535	Tnpo3	99	47.110	Mus_musculus
ENSCSAVG00000008623	-	94	54.182	MGP_PahariEiJ_G0021934	Tnpo3	99	47.110	Mus_pahari
ENSCSAVG00000008623	-	94	54.182	MGP_SPRETEiJ_G0029176	Tnpo3	99	47.110	Mus_spretus
ENSCSAVG00000008623	-	94	54.182	ENSMPUG00000006021	TNPO3	99	47.219	Mustela_putorius_furo
ENSCSAVG00000008623	-	94	54.182	ENSMLUG00000000947	TNPO3	92	55.655	Myotis_lucifugus
ENSCSAVG00000008623	-	94	54.182	ENSNGAG00000008722	Tnpo3	99	47.219	Nannospalax_galili
ENSCSAVG00000008623	-	94	54.909	ENSNBRG00000019001	tnpo3	99	48.292	Neolamprologus_brichardi
ENSCSAVG00000008623	-	94	54.182	ENSNLEG00000012491	TNPO3	99	46.154	Nomascus_leucogenys
ENSCSAVG00000008623	-	92	43.723	ENSMEUG00000002445	TNPO3	91	43.723	Notamacropus_eugenii
ENSCSAVG00000008623	-	78	58.621	ENSOPRG00000006163	TNPO3	77	58.621	Ochotona_princeps
ENSCSAVG00000008623	-	97	53.191	ENSODEG00000012826	TNPO3	99	47.098	Octodon_degus
ENSCSAVG00000008623	-	94	54.909	ENSONIG00000007604	tnpo3	99	47.764	Oreochromis_niloticus
ENSCSAVG00000008623	-	82	32.129	ENSOANG00000006305	-	90	32.129	Ornithorhynchus_anatinus
ENSCSAVG00000008623	-	96	45.405	ENSOANG00000011451	TNPO3	100	45.405	Ornithorhynchus_anatinus
ENSCSAVG00000008623	-	94	54.545	ENSOCUG00000010105	TNPO3	97	45.763	Oryctolagus_cuniculus
ENSCSAVG00000008623	-	96	53.047	ENSORLG00000029369	tnpo3	99	47.231	Oryzias_latipes
ENSCSAVG00000008623	-	96	53.047	ENSORLG00020003464	tnpo3	99	47.231	Oryzias_latipes_hni
ENSCSAVG00000008623	-	96	53.047	ENSORLG00015002610	tnpo3	99	47.231	Oryzias_latipes_hsok
ENSCSAVG00000008623	-	94	54.182	ENSOMEG00000021006	tnpo3	99	47.655	Oryzias_melastigma
ENSCSAVG00000008623	-	70	31.132	ENSOMEG00000001924	ipo13	82	31.250	Oryzias_melastigma
ENSCSAVG00000008623	-	73	30.000	ENSOMEG00000009109	-	85	30.000	Oryzias_melastigma
ENSCSAVG00000008623	-	94	54.182	ENSOGAG00000015340	TNPO3	99	47.110	Otolemur_garnettii
ENSCSAVG00000008623	-	94	54.182	ENSOARG00000004026	TNPO3	99	47.110	Ovis_aries
ENSCSAVG00000008623	-	94	54.182	ENSPPAG00000034975	TNPO3	99	47.219	Pan_paniscus
ENSCSAVG00000008623	-	94	54.182	ENSPPRG00000002050	TNPO3	99	47.219	Panthera_pardus
ENSCSAVG00000008623	-	94	54.182	ENSPTIG00000016167	TNPO3	99	47.219	Panthera_tigris_altaica
ENSCSAVG00000008623	-	94	54.182	ENSPTRG00000019676	TNPO3	99	47.219	Pan_troglodytes
ENSCSAVG00000008623	-	94	54.182	ENSPANG00000022226	TNPO3	98	47.098	Papio_anubis
ENSCSAVG00000008623	-	94	53.091	ENSPKIG00000023234	tnpo3	99	47.328	Paramormyrops_kingsleyae
ENSCSAVG00000008623	-	94	53.091	ENSPKIG00000008628	-	99	45.978	Paramormyrops_kingsleyae
ENSCSAVG00000008623	-	74	51.152	ENSPSIG00000006156	-	92	51.801	Pelodiscus_sinensis
ENSCSAVG00000008623	-	94	54.182	ENSPMGG00000009763	tnpo3	97	47.387	Periophthalmus_magnuspinnatus
ENSCSAVG00000008623	-	94	54.182	ENSPEMG00000000422	Tnpo3	99	47.219	Peromyscus_maniculatus_bairdii
ENSCSAVG00000008623	-	95	47.351	ENSPMAG00000008621	tnpo3	100	47.351	Petromyzon_marinus
ENSCSAVG00000008623	-	94	54.545	ENSPCIG00000011366	TNPO3	99	47.546	Phascolarctos_cinereus
ENSCSAVG00000008623	-	95	54.152	ENSPFOG00000013592	tnpo3	99	47.769	Poecilia_formosa
ENSCSAVG00000008623	-	95	54.152	ENSPLAG00000010188	tnpo3	99	47.769	Poecilia_latipinna
ENSCSAVG00000008623	-	95	54.152	ENSPMEG00000022731	tnpo3	99	47.769	Poecilia_mexicana
ENSCSAVG00000008623	-	95	54.152	ENSPREG00000019847	tnpo3	97	54.770	Poecilia_reticulata
ENSCSAVG00000008623	-	94	54.182	ENSPPYG00000017990	TNPO3	99	47.219	Pongo_abelii
ENSCSAVG00000008623	-	99	42.450	ENSPCAG00000010158	TNPO3	97	42.450	Procavia_capensis
ENSCSAVG00000008623	-	94	49.455	ENSPCOG00000023901	TNPO3	95	42.490	Propithecus_coquereli
ENSCSAVG00000008623	-	94	54.182	ENSPVAG00000015757	TNPO3	97	44.397	Pteropus_vampyrus
ENSCSAVG00000008623	-	94	54.909	ENSPNYG00000002349	tnpo3	99	47.874	Pundamilia_nyererei
ENSCSAVG00000008623	-	96	54.122	ENSPNAG00000001142	tnpo3	99	47.991	Pygocentrus_nattereri
ENSCSAVG00000008623	-	94	54.182	ENSRNOG00000021758	Tnpo3	99	47.110	Rattus_norvegicus
ENSCSAVG00000008623	-	94	54.182	ENSRBIG00000042549	TNPO3	99	47.219	Rhinopithecus_bieti
ENSCSAVG00000008623	-	94	54.182	ENSRROG00000039264	TNPO3	99	47.219	Rhinopithecus_roxellana
ENSCSAVG00000008623	-	94	45.985	ENSSBOG00000029642	TNPO3	99	39.429	Saimiri_boliviensis_boliviensis
ENSCSAVG00000008623	-	96	47.125	ENSSHAG00000006837	TNPO3	100	47.125	Sarcophilus_harrisii
ENSCSAVG00000008623	-	94	55.273	ENSSFOG00015004256	tnpo3	99	46.344	Scleropages_formosus
ENSCSAVG00000008623	-	94	53.818	ENSSFOG00015001474	tnpo3	99	47.764	Scleropages_formosus
ENSCSAVG00000008623	-	96	55.197	ENSSMAG00000010422	tnpo3	96	47.991	Scophthalmus_maximus
ENSCSAVG00000008623	-	94	55.273	ENSSDUG00000004850	tnpo3	99	47.874	Seriola_dumerili
ENSCSAVG00000008623	-	94	55.273	ENSSLDG00000016927	tnpo3	99	47.874	Seriola_lalandi_dorsalis
ENSCSAVG00000008623	-	84	52.653	ENSSARG00000013893	TNPO3	93	42.674	Sorex_araneus
ENSCSAVG00000008623	-	96	53.047	ENSSPUG00000007457	TNPO3	98	44.420	Sphenodon_punctatus
ENSCSAVG00000008623	-	94	55.273	ENSSPAG00000014209	tnpo3	96	50.850	Stegastes_partitus
ENSCSAVG00000008623	-	94	54.182	ENSSSCG00000016572	TNPO3	99	47.219	Sus_scrofa
ENSCSAVG00000008623	-	66	55.208	ENSTGUG00000016200	-	99	55.208	Taeniopygia_guttata
ENSCSAVG00000008623	-	94	49.638	ENSTRUG00000025251	tnpo3	96	50.890	Takifugu_rubripes
ENSCSAVG00000008623	-	94	54.182	ENSTNIG00000003347	tnpo3	99	46.957	Tetraodon_nigroviridis
ENSCSAVG00000008623	-	94	46.545	ENSTBEG00000007220	TNPO3	88	45.298	Tupaia_belangeri
ENSCSAVG00000008623	-	94	42.545	ENSTTRG00000014618	TNPO3	85	43.201	Tursiops_truncatus
ENSCSAVG00000008623	-	94	54.182	ENSUAMG00000021281	TNPO3	99	47.219	Ursus_americanus
ENSCSAVG00000008623	-	94	54.182	ENSUMAG00000006882	TNPO3	99	47.219	Ursus_maritimus
ENSCSAVG00000008623	-	85	41.200	ENSVPAG00000006166	TNPO3	88	41.200	Vicugna_pacos
ENSCSAVG00000008623	-	94	54.182	ENSVVUG00000011004	TNPO3	98	47.116	Vulpes_vulpes
ENSCSAVG00000008623	-	94	53.455	ENSXETG00000015009	tnpo3	99	43.293	Xenopus_tropicalis
ENSCSAVG00000008623	-	95	53.791	ENSXCOG00000011552	tnpo3	97	54.417	Xiphophorus_couchianus
ENSCSAVG00000008623	-	95	53.791	ENSXMAG00000013062	tnpo3	99	47.661	Xiphophorus_maculatus