EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSCSAVG00000009040 (Gene tree)
Gene ID
-
Gene Symbol
-
Alias
-
Full Name
-
Gene Type
protein_coding
Species
Ciona_savignyi
Status
putative
Strand
Minus strand
Length
17592 bases
Position
chrreftig_17:1671186-1688777
Accession
-
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSAVP00000015413tRNA-synt_1gPF09334.112.4e-1912
ENSCSAVP00000015413tRNA-synt_1gPF09334.112.4e-1922
ENSCSAVP00000015410tRNA-synt_1gPF09334.113.2e-1912
ENSCSAVP00000015410tRNA-synt_1gPF09334.113.2e-1922
ENSCSAVP00000015406tRNA-synt_1gPF09334.116.3e-1912
ENSCSAVP00000015406tRNA-synt_1gPF09334.116.3e-1922
ENSCSAVP00000015407tRNA-synt_1gPF09334.116.6e-1912
ENSCSAVP00000015407tRNA-synt_1gPF09334.116.6e-1922
ENSCSAVP00000015408tRNA-synt_1gPF09334.116.6e-1912
ENSCSAVP00000015408tRNA-synt_1gPF09334.116.6e-1922
ENSCSAVP00000015409tRNA-synt_1gPF09334.119.7e-1912
ENSCSAVP00000015409tRNA-synt_1gPF09334.119.7e-1922
ENSCSAVP00000015412tRNA-synt_1gPF09334.116.7e-1612
ENSCSAVP00000015412tRNA-synt_1gPF09334.116.7e-1622
ENSCSAVP00000015411tRNA-synt_1gPF09334.116.3e-1211
ENSCSAVP00000015407Anticodon_1PF08264.131.1e-1611
ENSCSAVP00000015408Anticodon_1PF08264.131.1e-1611
ENSCSAVP00000015409Anticodon_1PF08264.131.9e-1611
ENSCSAVP00000015406Anticodon_1PF08264.132.6e-1611
ENSCSAVP00000015410Anticodon_1PF08264.134.3e-1411
ENSCSAVP00000015411Anticodon_1PF08264.131.2e-1311
ENSCSAVP00000015412Anticodon_1PF08264.132.8e-1011
ENSCSAVP00000015413Anticodon_1PF08264.132.9e-0911
ENSCSAVP00000015406tRNA-synt_1PF00133.221.3e-4112
ENSCSAVP00000015406tRNA-synt_1PF00133.221.3e-4122
ENSCSAVP00000015407tRNA-synt_1PF00133.221.3e-4112
ENSCSAVP00000015407tRNA-synt_1PF00133.221.3e-4122
ENSCSAVP00000015408tRNA-synt_1PF00133.221.3e-4112
ENSCSAVP00000015408tRNA-synt_1PF00133.221.3e-4122
ENSCSAVP00000015410tRNA-synt_1PF00133.221.7e-3912
ENSCSAVP00000015410tRNA-synt_1PF00133.221.7e-3922
ENSCSAVP00000015409tRNA-synt_1PF00133.221.5e-3811
ENSCSAVP00000015412tRNA-synt_1PF00133.227.7e-3611
ENSCSAVP00000015413tRNA-synt_1PF00133.224.6e-3412
ENSCSAVP00000015413tRNA-synt_1PF00133.224.6e-3422
ENSCSAVP00000015411tRNA-synt_1PF00133.224.5e-2912
ENSCSAVP00000015411tRNA-synt_1PF00133.224.5e-2922
ENSCSAVP00000015414tRNA-synt_1PF00133.221.5e-2511
ENSCSAVP00000015409tRNA-synt_1ePF01406.194.2e-0711
ENSCSAVP00000015413tRNA-synt_1ePF01406.194.3e-0711
ENSCSAVP00000015410tRNA-synt_1ePF01406.194.7e-0711
ENSCSAVP00000015406tRNA-synt_1ePF01406.195.6e-0711
ENSCSAVP00000015407tRNA-synt_1ePF01406.195.6e-0711
ENSCSAVP00000015408tRNA-synt_1ePF01406.195.6e-0711
ENSCSAVP00000015412tRNA-synt_1ePF01406.191.6e-0511
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSAVT00000015590-2838-ENSCSAVP00000015413946 (aa)-H2ZCU7
ENSCSAVT00000015589-2403-ENSCSAVP00000015412801 (aa)-H2ZCU6
ENSCSAVT00000015588-2127-ENSCSAVP00000015411709 (aa)-H2ZCU5
ENSCSAVT00000015583-3602-ENSCSAVP000000154061175 (aa)-H2ZCU0
ENSCSAVT00000015591-1761-ENSCSAVP00000015414587 (aa)-H2ZCU8
ENSCSAVT00000015587-2904-ENSCSAVP00000015410968 (aa)-H2ZCU4
ENSCSAVT00000015586-3258-ENSCSAVP00000015409935 (aa)-H2ZCU3
ENSCSAVT00000015585-3609-ENSCSAVP000000154081183 (aa)-H2ZCU1
ENSCSAVT00000015584-3615-ENSCSAVP000000154071183 (aa)-H2ZCU1
Gene Model
Click here to download ENSCSAVG00000009040's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000009040's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSAVG00000009040-10068.577ENSG00000133706LARS10064.894Homo_sapiens
ENSCSAVG00000009040-10068.081ENSAPOG00000010585larsb9964.942Acanthochromis_polyacanthus
ENSCSAVG00000009040-10068.081ENSAMEG00000017584LARS9963.336Ailuropoda_melanoleuca
ENSCSAVG00000009040-10066.667ENSACIG00000014026larsb9962.005Amphilophus_citrinellus
ENSCSAVG00000009040-10068.187ENSAOCG00000016931larsb9963.499Amphiprion_ocellaris
ENSCSAVG00000009040-10068.187ENSAPEG00000017720larsb9963.499Amphiprion_percula
ENSCSAVG00000009040-10064.544ENSATEG00000010441larsb9960.862Anabas_testudineus
ENSCSAVG00000009040-10067.941ENSAPLG00000008145LARS9964.223Anas_platyrhynchos
ENSCSAVG00000009040-10067.622ENSACAG00000013916LARS9963.104Anolis_carolinensis
ENSCSAVG00000009040-9267.021ENSANAG00000014375LARS9961.651Aotus_nancymaae
ENSCSAVG00000009040-10068.187ENSACLG00000010881larsb9963.499Astatotilapia_calliptera
ENSCSAVG00000009040-10068.684ENSAMXG00000019979larsb9963.983Astyanax_mexicanus
ENSCSAVG00000009040-10068.577ENSBTAG00000006765LARS10063.844Bos_taurus
ENSCSAVG00000009040-9962.500WBGene00003073lars-19955.330Caenorhabditis_elegans
ENSCSAVG00000009040-10068.471ENSCJAG00000021314LARS10064.805Callithrix_jacchus
ENSCSAVG00000009040-10068.259ENSCAFG00000006431LARS9963.444Canis_familiaris
ENSCSAVG00000009040-10068.298ENSCAFG00020025009LARS10063.336Canis_lupus_dingo
ENSCSAVG00000009040-10068.790ENSCHIG00000014949LARS9964.037Capra_hircus
ENSCSAVG00000009040-10067.941ENSTSYG00000001253LARS9963.189Carlito_syrichta
ENSCSAVG00000009040-9364.857ENSCAPG00000015676LARS9655.892Cavia_aperea
ENSCSAVG00000009040-10067.941ENSCPOG00000012329LARS9963.528Cavia_porcellus
ENSCSAVG00000009040-10068.577ENSCCAG00000020789LARS9963.667Cebus_capucinus
ENSCSAVG00000009040-10068.471ENSCATG00000033463LARS10064.805Cercocebus_atys
ENSCSAVG00000009040-10068.047ENSCLAG00000011193LARS9963.783Chinchilla_lanigera
ENSCSAVG00000009040-10068.577ENSCSAG00000012280LARS9763.986Chlorocebus_sabaeus
ENSCSAVG00000009040-9867.012ENSCHOG00000009309LARS8962.557Choloepus_hoffmanni
ENSCSAVG00000009040-10068.790ENSCPBG00000008415LARS9965.058Chrysemys_picta_bellii
ENSCSAVG00000009040-10085.122ENSCING00000008535-9982.840Ciona_intestinalis
ENSCSAVG00000009040-10068.471ENSCANG00000031137LARS10063.590Colobus_angolensis_palliatus
ENSCSAVG00000009040-9662.500ENSCGRG00001004647Lars9959.290Cricetulus_griseus_chok1gshd
ENSCSAVG00000009040-10065.393ENSCGRG00000007284Lars9960.965Cricetulus_griseus_crigri
ENSCSAVG00000009040-10067.975ENSCSEG00000014984larsb10062.318Cynoglossus_semilaevis
ENSCSAVG00000009040-10068.081ENSCVAG00000014685larsb9963.468Cyprinodon_variegatus
ENSCSAVG00000009040-6468.534ENSDARG00000019280larsb10062.219Danio_rerio
ENSCSAVG00000009040-10068.499ENSDNOG00000017963LARS9964.732Dasypus_novemcinctus
ENSCSAVG00000009040-9669.542ENSDORG00000014913Lars10060.540Dipodomys_ordii
ENSCSAVG00000009040-9865.630FBgn0284253LeuRS9955.939Drosophila_melanogaster
ENSCSAVG00000009040-9462.195ENSETEG00000003145LARS7789.583Echinops_telfairi
ENSCSAVG00000009040-9864.846ENSEBUG00000014985larsb9856.301Eptatretus_burgeri
ENSCSAVG00000009040-10067.903ENSEASG00005020569LARS10063.327Equus_asinus_asinus
ENSCSAVG00000009040-10068.047ENSECAG00000008963LARS10064.184Equus_caballus
ENSCSAVG00000009040-8186.765ENSEEUG00000014854LARS6584.722Erinaceus_europaeus
ENSCSAVG00000009040-10068.153ENSELUG00000023311larsb10063.598Esox_lucius
ENSCSAVG00000009040-10067.941ENSFCAG00000008715LARS9965.789Felis_catus
ENSCSAVG00000009040-10068.365ENSFALG00000003209LARS9263.698Ficedula_albicollis
ENSCSAVG00000009040-10067.410ENSFDAG00000020764LARS9963.020Fukomys_damarensis
ENSCSAVG00000009040-9770.157ENSFHEG00000010437larsb10067.067Fundulus_heteroclitus
ENSCSAVG00000009040-10067.585ENSGMOG00000013645larsb9962.584Gadus_morhua
ENSCSAVG00000009040-10069.002ENSGALG00000007494LARS9963.868Gallus_gallus
ENSCSAVG00000009040-10067.869ENSGAFG00000005029larsb10062.247Gambusia_affinis
ENSCSAVG00000009040-10066.949ENSGACG00000020720larsb9962.722Gasterosteus_aculeatus
ENSCSAVG00000009040-10068.684ENSGAGG00000002353LARS10063.590Gopherus_agassizii
ENSCSAVG00000009040-10068.684ENSGGOG00000004103LARS9963.783Gorilla_gorilla
ENSCSAVG00000009040-10068.187ENSHBUG00000003051larsb9965.339Haplochromis_burtoni
ENSCSAVG00000009040-10068.471ENSHGLG00000006937LARS9963.953Heterocephalus_glaber_female
ENSCSAVG00000009040-10068.471ENSHGLG00100002801LARS9963.953Heterocephalus_glaber_male
ENSCSAVG00000009040-10067.975ENSHCOG00000003651larsb9962.932Hippocampus_comes
ENSCSAVG00000009040-10068.365ENSIPUG00000010756lars9964.280Ictalurus_punctatus
ENSCSAVG00000009040-10068.153ENSSTOG00000002356LARS9963.359Ictidomys_tridecemlineatus
ENSCSAVG00000009040-10067.834ENSJJAG00000015265Lars9962.935Jaculus_jaculus
ENSCSAVG00000009040-10067.550ENSKMAG00000009903larsb9962.426Kryptolebias_marmoratus
ENSCSAVG00000009040-10067.762ENSLBEG00000025237larsb9963.162Labrus_bergylta
ENSCSAVG00000009040-10068.577ENSLACG00000009321LARS9963.020Latimeria_chalumnae
ENSCSAVG00000009040-9868.966ENSLOCG00000010442larsb9963.305Lepisosteus_oculatus
ENSCSAVG00000009040-10067.834ENSLAFG00000000318LARS10062.860Loxodonta_africana
ENSCSAVG00000009040-10068.577ENSMFAG00000038685LARS10063.675Macaca_fascicularis
ENSCSAVG00000009040-10068.471ENSMMUG00000029787LARS9963.698Macaca_mulatta
ENSCSAVG00000009040-10066.312ENSMNEG00000044014LARS10061.864Macaca_nemestrina
ENSCSAVG00000009040-10068.471ENSMLEG00000037563LARS10063.421Mandrillus_leucophaeus
ENSCSAVG00000009040-10067.267ENSMAMG00000021385larsb9963.384Mastacembelus_armatus
ENSCSAVG00000009040-10068.081ENSMZEG00005002662larsb9963.421Maylandia_zebra
ENSCSAVG00000009040-10068.577ENSMGAG00000009388LARS9964.841Meleagris_gallopavo
ENSCSAVG00000009040-9960.267ENSMAUG00000003063Lars10054.890Mesocricetus_auratus
ENSCSAVG00000009040-9956.652ENSMICG00000035435-9952.498Microcebus_murinus
ENSCSAVG00000009040-10068.259ENSMICG00000035589-10063.251Microcebus_murinus
ENSCSAVG00000009040-10067.516ENSMOCG00000002092Lars9962.743Microtus_ochrogaster
ENSCSAVG00000009040-9769.110ENSMMOG00000013802larsb9960.947Mola_mola
ENSCSAVG00000009040-10064.369ENSMODG00000010231LARS9960.390Monodelphis_domestica
ENSCSAVG00000009040-10065.121ENSMALG00000018444larsb9961.817Monopterus_albus
ENSCSAVG00000009040-10066.667MGP_CAROLIEiJ_G0022225Lars9962.066Mus_caroli
ENSCSAVG00000009040-10066.667ENSMUSG00000024493Lars9961.929Mus_musculus
ENSCSAVG00000009040-10066.773MGP_PahariEiJ_G0018958Lars9962.235Mus_pahari
ENSCSAVG00000009040-10066.985MGP_SPRETEiJ_G0023135Lars9962.320Mus_spretus
ENSCSAVG00000009040-10067.722ENSMPUG00000007844LARS9963.207Mustela_putorius_furo
ENSCSAVG00000009040-10067.903ENSMLUG00000001125LARS9962.712Myotis_lucifugus
ENSCSAVG00000009040-10067.834ENSNGAG00000011596Lars10062.828Nannospalax_galili
ENSCSAVG00000009040-10068.399ENSNBRG00000005764larsb9963.675Neolamprologus_brichardi
ENSCSAVG00000009040-10068.259ENSNLEG00000009816LARS10063.336Nomascus_leucogenys
ENSCSAVG00000009040-7973.786ENSOPRG00000003076LARS8368.783Ochotona_princeps
ENSCSAVG00000009040-9769.056ENSODEG00000004882LARS9961.290Octodon_degus
ENSCSAVG00000009040-10068.505ENSONIG00000008493larsb9963.583Oreochromis_niloticus
ENSCSAVG00000009040-9968.421ENSOANG00000005755LARS9962.194Ornithorhynchus_anatinus
ENSCSAVG00000009040-10068.577ENSOCUG00000015684LARS9963.590Oryctolagus_cuniculus
ENSCSAVG00000009040-10067.762ENSORLG00000001622larsb10062.179Oryzias_latipes
ENSCSAVG00000009040-10067.762ENSORLG00020019950larsb9963.388Oryzias_latipes_hni
ENSCSAVG00000009040-10067.762ENSORLG00015003895larsb9963.047Oryzias_latipes_hsok
ENSCSAVG00000009040-10067.869ENSOMEG00000005677larsb9963.319Oryzias_melastigma
ENSCSAVG00000009040-9867.986ENSOGAG00000008750LARS9962.160Otolemur_garnettii
ENSCSAVG00000009040-10068.717ENSOARG00000002454-9963.983Ovis_aries
ENSCSAVG00000009040-10068.684ENSOARG00000015911-9963.953Ovis_aries
ENSCSAVG00000009040-10068.684ENSPPAG00000027964LARS9963.868Pan_paniscus
ENSCSAVG00000009040-10067.691ENSPPRG00000023492LARS9963.189Panthera_pardus
ENSCSAVG00000009040-10067.585ENSPTIG00000013110LARS9963.104Panthera_tigris_altaica
ENSCSAVG00000009040-10068.684ENSPTRG00000017372LARS9963.868Pan_troglodytes
ENSCSAVG00000009040-10068.471ENSPANG00000002663LARS10063.506Papio_anubis
ENSCSAVG00000009040-9871.057ENSPKIG00000006650larsb10061.824Paramormyrops_kingsleyae
ENSCSAVG00000009040-10068.047ENSPSIG00000015641LARS9963.359Pelodiscus_sinensis
ENSCSAVG00000009040-6469.357ENSPMGG00000019556LARS10063.636Periophthalmus_magnuspinnatus
ENSCSAVG00000009040-9767.365ENSPEMG00000010933Lars9959.695Peromyscus_maniculatus_bairdii
ENSCSAVG00000009040-5152.303ENSPMAG00000005301larsb9952.303Petromyzon_marinus
ENSCSAVG00000009040-10068.577ENSPCIG00000030572LARS9963.783Phascolarctos_cinereus
ENSCSAVG00000009040-10067.869ENSPFOG00000002361larsb9963.047Poecilia_formosa
ENSCSAVG00000009040-10068.081ENSPLAG00000016550larsb9963.215Poecilia_latipinna
ENSCSAVG00000009040-10067.869ENSPMEG00000018422larsb9963.131Poecilia_mexicana
ENSCSAVG00000009040-9870.415ENSPREG00000005668larsb9963.215Poecilia_reticulata
ENSCSAVG00000009040-10066.631ENSPPYG00000015908LARS9762.309Pongo_abelii
ENSCSAVG00000009040-9854.217ENSPCAG00000005621LARS9653.543Procavia_capensis
ENSCSAVG00000009040-10066.490ENSPCOG00000019325LARS9962.139Propithecus_coquereli
ENSCSAVG00000009040-10059.640ENSPVAG00000011237LARS9957.344Pteropus_vampyrus
ENSCSAVG00000009040-10067.975ENSPNYG00000015254larsb10063.322Pundamilia_nyererei
ENSCSAVG00000009040-10067.444ENSPNAG00000027191larsb9962.828Pygocentrus_nattereri
ENSCSAVG00000009040-10066.667ENSRNOG00000018304Lars9962.151Rattus_norvegicus
ENSCSAVG00000009040-9670.246ENSRBIG00000043198LARS10063.432Rhinopithecus_bieti
ENSCSAVG00000009040-9946.782YPL160WCDC609943.631Saccharomyces_cerevisiae
ENSCSAVG00000009040-9670.599ENSSBOG00000026661LARS10064.446Saimiri_boliviensis_boliviensis
ENSCSAVG00000009040-10068.929ENSSHAG00000006084LARS9964.237Sarcophilus_harrisii
ENSCSAVG00000009040-9870.740ENSSFOG00015018117larsb8965.636Scleropages_formosus
ENSCSAVG00000009040-10067.762ENSSMAG00000004078larsb9765.870Scophthalmus_maximus
ENSCSAVG00000009040-10067.762ENSSDUG00000021142larsb9963.415Seriola_dumerili
ENSCSAVG00000009040-10067.762ENSSLDG00000007054larsb9963.415Seriola_lalandi_dorsalis
ENSCSAVG00000009040-7985.294ENSSARG00000013481LARS8364.706Sorex_araneus
ENSCSAVG00000009040-10068.471ENSSPUG00000013805LARS9962.997Sphenodon_punctatus
ENSCSAVG00000009040-10068.293ENSSPAG00000012124larsb9963.583Stegastes_partitus
ENSCSAVG00000009040-9769.459ENSSSCG00000014411LARS9960.645Sus_scrofa
ENSCSAVG00000009040-10068.153ENSTGUG00000000092-9963.613Taeniopygia_guttata
ENSCSAVG00000009040-10066.631ENSTRUG00000005358larsb9962.679Takifugu_rubripes
ENSCSAVG00000009040-9769.459ENSTNIG00000018214larsb9960.338Tetraodon_nigroviridis
ENSCSAVG00000009040-9758.813ENSTBEG00000003757LARS9953.975Tupaia_belangeri
ENSCSAVG00000009040-10067.410ENSTTRG00000016712LARS9661.926Tursiops_truncatus
ENSCSAVG00000009040-10067.903ENSUAMG00000019907LARS9964.806Ursus_americanus
ENSCSAVG00000009040-10068.259ENSUMAG00000010585LARS9963.528Ursus_maritimus
ENSCSAVG00000009040-8872.165ENSVPAG00000000557LARS9162.370Vicugna_pacos
ENSCSAVG00000009040-10068.259ENSVVUG00000021124LARS9963.444Vulpes_vulpes
ENSCSAVG00000009040-10067.869ENSXETG00000002320lars9962.797Xenopus_tropicalis
ENSCSAVG00000009040-10068.081ENSXMAG00000001454larsb9963.047Xiphophorus_maculatus

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