EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000009178 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 6433 bases
Position: chrreftig_4:1442559-1448991
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000015619	PRP4	PF08799.11	7.7e-11	1	1
ENSCSAVP00000015618	PRP4	PF08799.11	9.1e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000015796	-	1877	-	ENSCSAVP00000015618	510 (aa)	-	H2ZDF2
ENSCSAVT00000015797	-	1723	-	ENSCSAVP00000015619	464 (aa)	-	H2ZDF3

Gene Model

Click here to download ENSCSAVG00000009178's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000009178's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000009178	-	64	34.146	ENSCSAVG00000003310	-	96	34.454
ENSCSAVG00000009178	-	74	30.114	ENSCSAVG00000001001	-	66	30.233

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000009178	-	99	58.874	ENSG00000136875	PRPF4	96	57.341	Homo_sapiens
ENSCSAVG00000009178	-	99	59.132	ENSAPOG00000014132	prpf4	98	57.469	Acanthochromis_polyacanthus
ENSCSAVG00000009178	-	99	58.874	ENSAMEG00000013048	PRPF4	94	57.540	Ailuropoda_melanoleuca
ENSCSAVG00000009178	-	99	60.823	ENSACIG00000005579	prpf4	99	58.743	Amphilophus_citrinellus
ENSCSAVG00000009178	-	99	60.823	ENSAOCG00000005457	prpf4	98	58.812	Amphiprion_ocellaris
ENSCSAVG00000009178	-	99	60.823	ENSAPEG00000000776	prpf4	98	58.812	Amphiprion_percula
ENSCSAVG00000009178	-	99	59.957	ENSATEG00000023013	prpf4	99	58.350	Anabas_testudineus
ENSCSAVG00000009178	-	99	59.957	ENSAPLG00000006534	PRPF4	92	59.514	Anas_platyrhynchos
ENSCSAVG00000009178	-	99	59.785	ENSACAG00000015110	PRPF4	95	58.871	Anolis_carolinensis
ENSCSAVG00000009178	-	99	58.874	ENSANAG00000022464	PRPF4	92	57.540	Aotus_nancymaae
ENSCSAVG00000009178	-	99	60.000	ENSACLG00000019031	prpf4	98	58.218	Astatotilapia_calliptera
ENSCSAVG00000009178	-	91	47.134	ENSAMXG00000006756	prpf4	99	52.860	Astyanax_mexicanus
ENSCSAVG00000009178	-	99	58.874	ENSBTAG00000004571	PRPF4	96	57.540	Bos_taurus
ENSCSAVG00000009178	-	99	43.013	WBGene00007972	prp-4	97	42.127	Caenorhabditis_elegans
ENSCSAVG00000009178	-	99	58.874	ENSCJAG00000017856	PRPF4	96	57.540	Callithrix_jacchus
ENSCSAVG00000009178	-	99	58.874	ENSCAFG00000003224	PRPF4	93	57.540	Canis_familiaris
ENSCSAVG00000009178	-	99	58.874	ENSCAFG00020022637	PRPF4	96	57.540	Canis_lupus_dingo
ENSCSAVG00000009178	-	99	58.874	ENSCHIG00000024648	-	96	57.540	Capra_hircus
ENSCSAVG00000009178	-	100	58.874	ENSTSYG00000010366	PRPF4	96	57.540	Carlito_syrichta
ENSCSAVG00000009178	-	99	52.506	ENSCAPG00000008935	PRPF4	94	54.815	Cavia_aperea
ENSCSAVG00000009178	-	99	55.411	ENSCPOG00000014729	-	96	54.134	Cavia_porcellus
ENSCSAVG00000009178	-	99	58.874	ENSCPOG00000010747	-	96	57.540	Cavia_porcellus
ENSCSAVG00000009178	-	99	58.874	ENSCCAG00000028990	PRPF4	96	57.540	Cebus_capucinus
ENSCSAVG00000009178	-	99	58.874	ENSCATG00000021552	PRPF4	96	57.540	Cercocebus_atys
ENSCSAVG00000009178	-	99	59.307	ENSCLAG00000013448	PRPF4	96	57.937	Chinchilla_lanigera
ENSCSAVG00000009178	-	99	57.792	ENSCHOG00000007233	PRPF4	99	60.045	Choloepus_hoffmanni
ENSCSAVG00000009178	-	99	60.173	ENSCPBG00000019136	PRPF4	71	59.717	Chrysemys_picta_bellii
ENSCSAVG00000009178	-	99	85.281	ENSCING00000001299	-	97	88.057	Ciona_intestinalis
ENSCSAVG00000009178	-	100	58.874	ENSCANG00000003246	PRPF4	96	57.540	Colobus_angolensis_palliatus
ENSCSAVG00000009178	-	100	58.658	ENSCGRG00001016992	Prpf4	96	57.341	Cricetulus_griseus_chok1gshd
ENSCSAVG00000009178	-	100	58.658	ENSCGRG00000017560	Prpf4	96	57.341	Cricetulus_griseus_crigri
ENSCSAVG00000009178	-	99	60.345	ENSCSEG00000020451	prpf4	98	59.046	Cynoglossus_semilaevis
ENSCSAVG00000009178	-	99	61.290	ENSDARG00000067639	prpf4	99	59.608	Danio_rerio
ENSCSAVG00000009178	-	99	58.658	ENSDNOG00000013203	PRPF4	96	57.540	Dasypus_novemcinctus
ENSCSAVG00000009178	-	99	59.091	ENSDORG00000026275	Prpf4	96	57.738	Dipodomys_ordii
ENSCSAVG00000009178	-	99	52.052	FBgn0036733	U4-U6-60K	82	53.145	Drosophila_melanogaster
ENSCSAVG00000009178	-	99	58.658	ENSETEG00000020389	PRPF4	96	57.540	Echinops_telfairi
ENSCSAVG00000009178	-	99	60.401	ENSEBUG00000015229	prpf4	89	59.101	Eptatretus_burgeri
ENSCSAVG00000009178	-	99	58.874	ENSEASG00005022678	PRPF4	96	57.540	Equus_asinus_asinus
ENSCSAVG00000009178	-	99	58.874	ENSECAG00000007072	PRPF4	96	57.540	Equus_caballus
ENSCSAVG00000009178	-	80	65.690	ENSEEUG00000007480	PRPF4	94	45.833	Erinaceus_europaeus
ENSCSAVG00000009178	-	99	59.091	ENSELUG00000007510	prpf4	99	57.791	Esox_lucius
ENSCSAVG00000009178	-	99	58.874	ENSFCAG00000005514	PRPF4	96	57.540	Felis_catus
ENSCSAVG00000009178	-	99	58.396	ENSFALG00000005423	PRPF4	83	58.005	Ficedula_albicollis
ENSCSAVG00000009178	-	99	59.091	ENSFDAG00000005839	PRPF4	96	57.738	Fukomys_damarensis
ENSCSAVG00000009178	-	99	60.860	ENSFHEG00000001300	prpf4	98	60.236	Fundulus_heteroclitus
ENSCSAVG00000009178	-	99	59.957	ENSGALG00000008857	PRPF4	91	59.312	Gallus_gallus
ENSCSAVG00000009178	-	89	54.448	ENSGAFG00000012164	prpf4	69	53.049	Gambusia_affinis
ENSCSAVG00000009178	-	99	55.292	ENSGACG00000015476	prpf4	99	55.078	Gasterosteus_aculeatus
ENSCSAVG00000009178	-	99	60.173	ENSGAGG00000025029	PRPF4	91	59.514	Gopherus_agassizii
ENSCSAVG00000009178	-	99	58.874	ENSGGOG00000006943	PRPF4	96	57.341	Gorilla_gorilla
ENSCSAVG00000009178	-	99	59.957	ENSHBUG00000000562	prpf4	98	58.218	Haplochromis_burtoni
ENSCSAVG00000009178	-	99	50.647	ENSHGLG00000016628	-	92	51.158	Heterocephalus_glaber_female
ENSCSAVG00000009178	-	99	58.874	ENSHGLG00000015191	PRPF4	96	57.540	Heterocephalus_glaber_female
ENSCSAVG00000009178	-	98	49.453	ENSHGLG00000003838	-	94	48.898	Heterocephalus_glaber_female
ENSCSAVG00000009178	-	98	49.453	ENSHGLG00100005571	-	94	48.898	Heterocephalus_glaber_male
ENSCSAVG00000009178	-	99	59.698	ENSIPUG00000017956	PRPF4	99	58.185	Ictalurus_punctatus
ENSCSAVG00000009178	-	99	58.658	ENSSTOG00000027833	PRPF4	96	57.341	Ictidomys_tridecemlineatus
ENSCSAVG00000009178	-	99	59.091	ENSJJAG00000008838	Prpf4	96	57.738	Jaculus_jaculus
ENSCSAVG00000009178	-	99	60.606	ENSKMAG00000013236	prpf4	99	58.743	Kryptolebias_marmoratus
ENSCSAVG00000009178	-	99	59.355	ENSLBEG00000020611	prpf4	99	58.185	Labrus_bergylta
ENSCSAVG00000009178	-	100	57.328	ENSLACG00000016317	PRPF4	96	56.445	Latimeria_chalumnae
ENSCSAVG00000009178	-	99	60.776	ENSLOCG00000000581	prpf4	99	58.847	Lepisosteus_oculatus
ENSCSAVG00000009178	-	99	58.874	ENSLAFG00000018225	PRPF4	96	57.540	Loxodonta_africana
ENSCSAVG00000009178	-	99	58.658	ENSMFAG00000039397	PRPF4	96	57.341	Macaca_fascicularis
ENSCSAVG00000009178	-	99	58.874	ENSMMUG00000005844	PRPF4	96	57.540	Macaca_mulatta
ENSCSAVG00000009178	-	99	51.515	ENSMNEG00000033737	PRPF4	96	50.794	Macaca_nemestrina
ENSCSAVG00000009178	-	100	58.874	ENSMLEG00000040284	PRPF4	96	57.540	Mandrillus_leucophaeus
ENSCSAVG00000009178	-	99	59.740	ENSMAMG00000020141	prpf4	99	57.957	Mastacembelus_armatus
ENSCSAVG00000009178	-	99	60.000	ENSMZEG00005023205	prpf4	98	58.218	Maylandia_zebra
ENSCSAVG00000009178	-	99	59.957	ENSMGAG00000001796	PRPF4	92	58.990	Meleagris_gallopavo
ENSCSAVG00000009178	-	100	58.658	ENSMAUG00000018022	Prpf4	96	57.341	Mesocricetus_auratus
ENSCSAVG00000009178	-	100	59.091	ENSMICG00000015022	PRPF4	96	57.738	Microcebus_murinus
ENSCSAVG00000009178	-	100	58.225	ENSMOCG00000018273	Prpf4	96	56.944	Microtus_ochrogaster
ENSCSAVG00000009178	-	99	58.621	ENSMMOG00000021177	prpf4	99	57.760	Mola_mola
ENSCSAVG00000009178	-	99	59.307	ENSMODG00000025096	-	94	57.647	Monodelphis_domestica
ENSCSAVG00000009178	-	99	59.091	ENSMODG00000004444	-	97	57.339	Monodelphis_domestica
ENSCSAVG00000009178	-	99	59.785	ENSMALG00000013624	prpf4	99	58.153	Monopterus_albus
ENSCSAVG00000009178	-	100	58.658	MGP_CAROLIEiJ_G0026078	Prpf4	96	57.341	Mus_caroli
ENSCSAVG00000009178	-	100	58.658	ENSMUSG00000066148	Prpf4	96	57.341	Mus_musculus
ENSCSAVG00000009178	-	100	58.658	MGP_PahariEiJ_G0028413	Prpf4	96	57.341	Mus_pahari
ENSCSAVG00000009178	-	100	58.658	MGP_SPRETEiJ_G0027042	Prpf4	96	57.341	Mus_spretus
ENSCSAVG00000009178	-	99	58.874	ENSMPUG00000007883	PRPF4	96	57.540	Mustela_putorius_furo
ENSCSAVG00000009178	-	99	58.009	ENSMLUG00000008626	-	93	56.634	Myotis_lucifugus
ENSCSAVG00000009178	-	99	58.874	ENSMLUG00000015309	-	93	57.540	Myotis_lucifugus
ENSCSAVG00000009178	-	99	53.896	ENSNGAG00000000468	Prpf4	96	52.976	Nannospalax_galili
ENSCSAVG00000009178	-	99	60.215	ENSNBRG00000007972	prpf4	98	58.416	Neolamprologus_brichardi
ENSCSAVG00000009178	-	99	58.874	ENSNLEG00000016647	PRPF4	96	57.540	Nomascus_leucogenys
ENSCSAVG00000009178	-	99	59.307	ENSMEUG00000013256	PRPF4	98	57.534	Notamacropus_eugenii
ENSCSAVG00000009178	-	99	59.091	ENSOPRG00000005302	PRPF4	96	57.738	Ochotona_princeps
ENSCSAVG00000009178	-	99	59.091	ENSODEG00000018147	PRPF4	96	57.738	Octodon_degus
ENSCSAVG00000009178	-	99	60.000	ENSONIG00000012671	prpf4	98	58.218	Oreochromis_niloticus
ENSCSAVG00000009178	-	99	59.091	ENSOCUG00000005046	PRPF4	96	57.738	Oryctolagus_cuniculus
ENSCSAVG00000009178	-	99	60.560	ENSORLG00000019641	prpf4	99	59.136	Oryzias_latipes
ENSCSAVG00000009178	-	99	60.560	ENSORLG00020019438	prpf4	99	59.136	Oryzias_latipes_hni
ENSCSAVG00000009178	-	99	59.725	ENSOMEG00000020941	prpf4	99	58.546	Oryzias_melastigma
ENSCSAVG00000009178	-	99	55.411	ENSOGAG00000007802	PRPF4	94	54.365	Otolemur_garnettii
ENSCSAVG00000009178	-	100	58.874	ENSOARG00000006319	PRPF4	93	57.540	Ovis_aries
ENSCSAVG00000009178	-	99	58.874	ENSPPAG00000041797	PRPF4	96	57.341	Pan_paniscus
ENSCSAVG00000009178	-	99	58.874	ENSPPRG00000014360	PRPF4	96	57.540	Panthera_pardus
ENSCSAVG00000009178	-	99	58.874	ENSPTIG00000009574	PRPF4	96	57.540	Panthera_tigris_altaica
ENSCSAVG00000009178	-	99	58.874	ENSPTRG00000021274	PRPF4	96	57.341	Pan_troglodytes
ENSCSAVG00000009178	-	100	58.874	ENSPANG00000025776	PRPF4	92	57.540	Papio_anubis
ENSCSAVG00000009178	-	99	60.430	ENSPKIG00000017259	prpf4	99	59.289	Paramormyrops_kingsleyae
ENSCSAVG00000009178	-	99	59.524	ENSPSIG00000010713	PRPF4	86	59.109	Pelodiscus_sinensis
ENSCSAVG00000009178	-	99	43.704	ENSPMGG00000000997	prpf4	97	43.704	Periophthalmus_magnuspinnatus
ENSCSAVG00000009178	-	100	58.658	ENSPEMG00000024115	Prpf4	96	57.341	Peromyscus_maniculatus_bairdii
ENSCSAVG00000009178	-	99	59.307	ENSPCIG00000003821	PRPF4	98	57.534	Phascolarctos_cinereus
ENSCSAVG00000009178	-	99	55.365	ENSPFOG00000013524	prpf4	99	54.386	Poecilia_formosa
ENSCSAVG00000009178	-	87	53.474	ENSPLAG00000011620	prpf4	98	53.191	Poecilia_latipinna
ENSCSAVG00000009178	-	99	56.357	ENSPMEG00000006813	prpf4	99	54.142	Poecilia_mexicana
ENSCSAVG00000009178	-	99	58.658	ENSPCAG00000002561	PRPF4	97	57.341	Procavia_capensis
ENSCSAVG00000009178	-	100	59.091	ENSPCOG00000011975	PRPF4	96	57.738	Propithecus_coquereli
ENSCSAVG00000009178	-	99	55.844	ENSPVAG00000004708	PRPF4	96	54.762	Pteropus_vampyrus
ENSCSAVG00000009178	-	99	60.000	ENSPNYG00000008013	prpf4	98	58.218	Pundamilia_nyererei
ENSCSAVG00000009178	-	99	59.740	ENSPNAG00000000697	prpf4	99	57.988	Pygocentrus_nattereri
ENSCSAVG00000009178	-	100	58.658	ENSRNOG00000014777	Prpf4	96	57.341	Rattus_norvegicus
ENSCSAVG00000009178	-	100	58.874	ENSRBIG00000040221	PRPF4	96	57.540	Rhinopithecus_bieti
ENSCSAVG00000009178	-	100	58.874	ENSRROG00000040240	PRPF4	96	57.540	Rhinopithecus_roxellana
ENSCSAVG00000009178	-	99	59.307	ENSSHAG00000017658	PRPF4	97	57.534	Sarcophilus_harrisii
ENSCSAVG00000009178	-	99	61.075	ENSSFOG00015008963	prpf4	99	60.079	Scleropages_formosus
ENSCSAVG00000009178	-	99	59.140	ENSSMAG00000008889	prpf4	99	57.760	Scophthalmus_maximus
ENSCSAVG00000009178	-	100	58.904	ENSSDUG00000022083	prpf4	93	57.469	Seriola_dumerili
ENSCSAVG00000009178	-	100	58.676	ENSSLDG00000008115	prpf4	95	56.939	Seriola_lalandi_dorsalis
ENSCSAVG00000009178	-	99	59.524	ENSSPUG00000015582	PRPF4	95	58.566	Sphenodon_punctatus
ENSCSAVG00000009178	-	99	55.699	ENSSPAG00000011286	prpf4	99	54.688	Stegastes_partitus
ENSCSAVG00000009178	-	99	58.874	ENSSSCG00000024648	PRPF4	96	57.540	Sus_scrofa
ENSCSAVG00000009178	-	99	59.957	ENSTGUG00000002623	PRPF4	96	60.888	Taeniopygia_guttata
ENSCSAVG00000009178	-	99	60.606	ENSTRUG00000008853	prpf4	98	59.127	Takifugu_rubripes
ENSCSAVG00000009178	-	99	60.173	ENSTNIG00000013250	prpf4	98	58.648	Tetraodon_nigroviridis
ENSCSAVG00000009178	-	100	54.113	ENSTBEG00000000821	PRPF4	96	53.373	Tupaia_belangeri
ENSCSAVG00000009178	-	99	61.628	ENSTTRG00000003246	PRPF4	84	61.628	Tursiops_truncatus
ENSCSAVG00000009178	-	69	46.307	ENSUAMG00000018288	PRPF4	92	47.093	Ursus_americanus
ENSCSAVG00000009178	-	99	58.225	ENSUMAG00000019375	PRPF4	96	56.944	Ursus_maritimus
ENSCSAVG00000009178	-	99	59.091	ENSVPAG00000005281	PRPF4	94	58.468	Vicugna_pacos
ENSCSAVG00000009178	-	99	58.369	ENSVVUG00000002476	PRPF4	99	57.087	Vulpes_vulpes
ENSCSAVG00000009178	-	75	49.435	ENSXCOG00000006101	prpf4	93	50.000	Xiphophorus_couchianus
ENSCSAVG00000009178	-	90	50.827	ENSXMAG00000002750	prpf4	99	51.473	Xiphophorus_maculatus