EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000009304 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 9524 bases
Position: chrreftig_48:1003367-1012890
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000015827	rRNA_proc-arch	PF13234.6	7.5e-78	1	1
ENSCSAVP00000015829	rRNA_proc-arch	PF13234.6	7.6e-78	1	1
ENSCSAVP00000015825	rRNA_proc-arch	PF13234.6	8.6e-78	1	1
ENSCSAVP00000015831	rRNA_proc-arch	PF13234.6	1.4e-75	1	1
ENSCSAVP00000015830	rRNA_proc-arch	PF13234.6	2.8e-75	1	1
ENSCSAVP00000015828	rRNA_proc-arch	PF13234.6	2.3e-71	1	1
ENSCSAVP00000015826	rRNA_proc-arch	PF13234.6	3.3e-60	1	1
ENSCSAVP00000015832	rRNA_proc-arch	PF13234.6	2.5e-08	1	1
ENSCSAVP00000015826	DEAD	PF00270.29	6.3e-17	1	1
ENSCSAVP00000015831	DEAD	PF00270.29	8.3e-17	1	1
ENSCSAVP00000015829	DEAD	PF00270.29	9e-17	1	1
ENSCSAVP00000015827	DEAD	PF00270.29	9.1e-17	1	1
ENSCSAVP00000015830	DEAD	PF00270.29	9.3e-17	1	1
ENSCSAVP00000015825	DEAD	PF00270.29	1.1e-16	1	1
ENSCSAVP00000015828	DEAD	PF00270.29	2.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000016009	-	3156	-	ENSCSAVP00000015830	962 (aa)	-	H2ZE14
ENSCSAVT00000016008	-	3150	-	ENSCSAVP00000015829	960 (aa)	-	H2ZE13
ENSCSAVT00000016007	-	3426	-	ENSCSAVP00000015828	1099 (aa)	-	H2ZE12
ENSCSAVT00000016006	-	3117	-	ENSCSAVP00000015827	959 (aa)	-	H2ZE11
ENSCSAVT00000016005	-	2960	-	ENSCSAVP00000015826	927 (aa)	-	H2ZE10
ENSCSAVT00000016004	-	3111	-	ENSCSAVP00000015825	1034 (aa)	-	H2ZE09
ENSCSAVT00000016010	-	2790	-	ENSCSAVP00000015831	929 (aa)	-	H2ZE15
ENSCSAVT00000016011	-	1568	-	ENSCSAVP00000015832	319 (aa)	-	H2ZE16

Gene Model

Click here to download ENSCSAVG00000009304's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000009304's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000009304	-	60	38.776	ENSCSAVG00000007670	-	75	38.710

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000009304	-	100	70.108	ENSG00000039123	MTREX	99	65.396	Homo_sapiens
ENSCSAVG00000009304	-	99	69.710	ENSAPOG00000007814	mtrex	99	64.813	Acanthochromis_polyacanthus
ENSCSAVG00000009304	-	100	69.925	ENSAMEG00000013856	MTREX	99	65.209	Ailuropoda_melanoleuca
ENSCSAVG00000009304	-	100	69.066	ENSACIG00000015117	mtrex	96	68.158	Amphilophus_citrinellus
ENSCSAVG00000009304	-	99	69.710	ENSAOCG00000011884	mtrex	99	64.938	Amphiprion_ocellaris
ENSCSAVG00000009304	-	99	69.603	ENSAPEG00000019384	mtrex	99	64.841	Amphiprion_percula
ENSCSAVG00000009304	-	100	69.313	ENSATEG00000015117	mtrex	99	64.457	Anabas_testudineus
ENSCSAVG00000009304	-	100	69.570	ENSAPLG00000009694	MTREX	98	67.485	Anas_platyrhynchos
ENSCSAVG00000009304	-	100	71.290	ENSACAG00000015200	MTREX	96	66.667	Anolis_carolinensis
ENSCSAVG00000009304	-	100	70.000	ENSANAG00000023095	MTREX	99	65.553	Aotus_nancymaae
ENSCSAVG00000009304	-	99	69.173	ENSACLG00000001921	mtrex	99	64.265	Astatotilapia_calliptera
ENSCSAVG00000009304	-	97	68.036	ENSAMXG00000018751	mtrex	99	63.911	Astyanax_mexicanus
ENSCSAVG00000009304	-	100	70.108	ENSBTAG00000010518	MTREX	99	65.583	Bos_taurus
ENSCSAVG00000009304	-	100	52.258	WBGene00012342	mtr-4	93	51.603	Caenorhabditis_elegans
ENSCSAVG00000009304	-	100	70.000	ENSCJAG00000001773	MTREX	99	65.085	Callithrix_jacchus
ENSCSAVG00000009304	-	100	70.108	ENSCAFG00000006818	MTREX	99	65.271	Canis_familiaris
ENSCSAVG00000009304	-	100	70.108	ENSCAFG00020024352	MTREX	99	65.271	Canis_lupus_dingo
ENSCSAVG00000009304	-	100	70.108	ENSCHIG00000024413	MTREX	99	65.553	Capra_hircus
ENSCSAVG00000009304	-	92	80.351	ENSTSYG00000007389	MTREX	87	80.351	Carlito_syrichta
ENSCSAVG00000009304	-	76	89.697	ENSCAPG00000008696	MTREX	82	89.697	Cavia_aperea
ENSCSAVG00000009304	-	100	70.108	ENSCPOG00000009797	MTREX	99	65.810	Cavia_porcellus
ENSCSAVG00000009304	-	100	70.000	ENSCCAG00000014177	MTREX	99	65.458	Cebus_capucinus
ENSCSAVG00000009304	-	100	70.108	ENSCATG00000042153	MTREX	99	65.586	Cercocebus_atys
ENSCSAVG00000009304	-	100	70.108	ENSCLAG00000006622	MTREX	99	65.744	Chinchilla_lanigera
ENSCSAVG00000009304	-	100	67.203	ENSCSAG00000016445	MTREX	99	63.023	Chlorocebus_sabaeus
ENSCSAVG00000009304	-	60	94.444	ENSCHOG00000010936	-	61	94.444	Choloepus_hoffmanni
ENSCSAVG00000009304	-	100	70.538	ENSCPBG00000026551	MTREX	93	66.412	Chrysemys_picta_bellii
ENSCSAVG00000009304	-	100	92.708	ENSCING00000003239	-	100	90.173	Ciona_intestinalis
ENSCSAVG00000009304	-	100	70.108	ENSCANG00000035770	MTREX	99	65.494	Colobus_angolensis_palliatus
ENSCSAVG00000009304	-	100	69.892	ENSCGRG00001024680	Mtrex	99	65.076	Cricetulus_griseus_chok1gshd
ENSCSAVG00000009304	-	100	69.892	ENSCGRG00000000307	Mtrex	99	65.076	Cricetulus_griseus_crigri
ENSCSAVG00000009304	-	100	69.313	ENSCSEG00000018621	mtrex	98	64.593	Cynoglossus_semilaevis
ENSCSAVG00000009304	-	99	69.462	ENSCVAG00000004556	mtrex	99	64.593	Cyprinodon_variegatus
ENSCSAVG00000009304	-	100	69.957	ENSDARG00000013457	mtrex	99	65.388	Danio_rerio
ENSCSAVG00000009304	-	100	70.108	ENSDNOG00000015375	MTREX	99	64.957	Dasypus_novemcinctus
ENSCSAVG00000009304	-	100	69.892	ENSDORG00000006782	Mtrex	99	65.363	Dipodomys_ordii
ENSCSAVG00000009304	-	100	61.123	FBgn0001986	Mtr4	95	59.095	Drosophila_melanogaster
ENSCSAVG00000009304	-	85	63.811	ENSETEG00000000727	MTREX	74	65.062	Echinops_telfairi
ENSCSAVG00000009304	-	100	69.107	ENSEBUG00000012869	mtrex	100	64.655	Eptatretus_burgeri
ENSCSAVG00000009304	-	100	69.892	ENSEASG00005013270	MTREX	99	69.507	Equus_asinus_asinus
ENSCSAVG00000009304	-	100	70.000	ENSECAG00000023723	MTREX	99	69.507	Equus_caballus
ENSCSAVG00000009304	-	81	86.432	ENSEEUG00000000527	MTREX	79	86.432	Erinaceus_europaeus
ENSCSAVG00000009304	-	100	70.494	ENSELUG00000004898	mtrex	100	69.697	Esox_lucius
ENSCSAVG00000009304	-	100	70.000	ENSFCAG00000010575	MTREX	99	65.209	Felis_catus
ENSCSAVG00000009304	-	100	70.215	ENSFALG00000010850	MTREX	99	65.962	Ficedula_albicollis
ENSCSAVG00000009304	-	100	69.785	ENSFDAG00000011199	MTREX	99	65.201	Fukomys_damarensis
ENSCSAVG00000009304	-	100	69.528	ENSFHEG00000023014	mtrex	93	68.711	Fundulus_heteroclitus
ENSCSAVG00000009304	-	99	68.387	ENSGMOG00000014702	mtrex	91	69.206	Gadus_morhua
ENSCSAVG00000009304	-	100	69.968	ENSGALG00000014709	MTREX	86	65.351	Gallus_gallus
ENSCSAVG00000009304	-	100	69.124	ENSGAFG00000012425	mtrex	99	67.141	Gambusia_affinis
ENSCSAVG00000009304	-	99	68.784	ENSGACG00000016260	mtrex	96	69.156	Gasterosteus_aculeatus
ENSCSAVG00000009304	-	100	70.323	ENSGAGG00000020036	MTREX	99	66.126	Gopherus_agassizii
ENSCSAVG00000009304	-	100	70.108	ENSGGOG00000001867	MTREX	99	65.396	Gorilla_gorilla
ENSCSAVG00000009304	-	99	69.173	ENSHBUG00000006229	mtrex	99	64.265	Haplochromis_burtoni
ENSCSAVG00000009304	-	100	70.000	ENSHGLG00000019445	SKIV2L2	99	65.491	Heterocephalus_glaber_female
ENSCSAVG00000009304	-	100	70.000	ENSHGLG00100011833	SKIV2L2	99	65.491	Heterocephalus_glaber_male
ENSCSAVG00000009304	-	99	67.188	ENSHCOG00000019995	mtrex	100	66.160	Hippocampus_comes
ENSCSAVG00000009304	-	100	69.817	ENSIPUG00000024348	skiv2l2	99	65.451	Ictalurus_punctatus
ENSCSAVG00000009304	-	100	70.108	ENSSTOG00000010802	MTREX	99	65.491	Ictidomys_tridecemlineatus
ENSCSAVG00000009304	-	100	66.846	ENSJJAG00000020975	Mtrex	99	62.668	Jaculus_jaculus
ENSCSAVG00000009304	-	99	69.892	ENSKMAG00000012642	mtrex	99	65.477	Kryptolebias_marmoratus
ENSCSAVG00000009304	-	99	69.388	ENSLBEG00000019367	mtrex	99	67.809	Labrus_bergylta
ENSCSAVG00000009304	-	100	70.538	ENSLACG00000009075	MTREX	99	66.346	Latimeria_chalumnae
ENSCSAVG00000009304	-	100	70.936	ENSLOCG00000010186	mtrex	99	66.763	Lepisosteus_oculatus
ENSCSAVG00000009304	-	99	68.065	ENSLAFG00000010497	MTREX	99	63.645	Loxodonta_africana
ENSCSAVG00000009304	-	100	70.108	ENSMFAG00000031610	MTREX	99	65.586	Macaca_fascicularis
ENSCSAVG00000009304	-	100	70.000	ENSMMUG00000010379	MTREX	99	65.337	Macaca_mulatta
ENSCSAVG00000009304	-	100	70.108	ENSMNEG00000032746	MTREX	99	65.586	Macaca_nemestrina
ENSCSAVG00000009304	-	100	70.108	ENSMLEG00000041051	MTREX	99	65.586	Mandrillus_leucophaeus
ENSCSAVG00000009304	-	99	69.570	ENSMAMG00000016753	mtrex	99	66.935	Mastacembelus_armatus
ENSCSAVG00000009304	-	99	69.173	ENSMZEG00005000414	mtrex	99	64.265	Maylandia_zebra
ENSCSAVG00000009304	-	100	51.927	ENSMGAG00000003980	MTREX	98	50.821	Meleagris_gallopavo
ENSCSAVG00000009304	-	100	69.892	ENSMAUG00000010727	Mtrex	99	65.267	Mesocricetus_auratus
ENSCSAVG00000009304	-	100	70.108	ENSMICG00000012779	MTREX	99	65.396	Microcebus_murinus
ENSCSAVG00000009304	-	100	69.785	ENSMOCG00000019886	Mtrex	99	65.205	Microtus_ochrogaster
ENSCSAVG00000009304	-	99	68.851	ENSMMOG00000002476	mtrex	99	66.398	Mola_mola
ENSCSAVG00000009304	-	100	70.430	ENSMODG00000019494	MTREX	99	65.643	Monodelphis_domestica
ENSCSAVG00000009304	-	100	66.105	ENSMALG00000002917	mtrex	98	65.373	Monopterus_albus
ENSCSAVG00000009304	-	100	69.677	MGP_CAROLIEiJ_G0018896	Mtrex	99	64.795	Mus_caroli
ENSCSAVG00000009304	-	100	69.570	ENSMUSG00000016018	Mtrex	99	65.138	Mus_musculus
ENSCSAVG00000009304	-	100	69.892	MGP_PahariEiJ_G0015967	Mtrex	99	65.425	Mus_pahari
ENSCSAVG00000009304	-	100	69.570	MGP_SPRETEiJ_G0019775	Mtrex	99	65.138	Mus_spretus
ENSCSAVG00000009304	-	100	70.000	ENSMPUG00000007619	MTREX	99	65.396	Mustela_putorius_furo
ENSCSAVG00000009304	-	100	69.775	ENSMLUG00000001152	MTREX	99	65.271	Myotis_lucifugus
ENSCSAVG00000009304	-	100	70.108	ENSNGAG00000011938	Mtrex	99	65.521	Nannospalax_galili
ENSCSAVG00000009304	-	99	69.280	ENSNBRG00000011293	mtrex	99	64.361	Neolamprologus_brichardi
ENSCSAVG00000009304	-	100	66.494	ENSNLEG00000001494	MTREX	99	62.678	Nomascus_leucogenys
ENSCSAVG00000009304	-	77	84.314	ENSMEUG00000006496	-	67	84.314	Notamacropus_eugenii
ENSCSAVG00000009304	-	100	56.146	ENSOPRG00000008009	MTREX	92	56.166	Ochotona_princeps
ENSCSAVG00000009304	-	100	69.677	ENSODEG00000017234	MTREX	99	65.267	Octodon_degus
ENSCSAVG00000009304	-	99	69.066	ENSONIG00000007587	mtrex	99	64.169	Oreochromis_niloticus
ENSCSAVG00000009304	-	97	63.548	ENSOANG00000004885	-	99	62.282	Ornithorhynchus_anatinus
ENSCSAVG00000009304	-	100	70.108	ENSOCUG00000004463	MTREX	99	65.616	Oryctolagus_cuniculus
ENSCSAVG00000009304	-	100	68.991	ENSORLG00000005443	mtrex	99	64.340	Oryzias_latipes
ENSCSAVG00000009304	-	100	68.884	ENSORLG00020006329	mtrex	99	64.245	Oryzias_latipes_hni
ENSCSAVG00000009304	-	100	68.991	ENSORLG00015012924	mtrex	99	64.430	Oryzias_latipes_hsok
ENSCSAVG00000009304	-	100	68.556	ENSOMEG00000008825	mtrex	99	63.958	Oryzias_melastigma
ENSCSAVG00000009304	-	100	70.108	ENSOGAG00000002886	MTREX	99	65.649	Otolemur_garnettii
ENSCSAVG00000009304	-	100	69.882	ENSOARG00000007764	MTREX	99	65.366	Ovis_aries
ENSCSAVG00000009304	-	100	70.108	ENSPPAG00000039291	MTREX	99	65.396	Pan_paniscus
ENSCSAVG00000009304	-	100	70.000	ENSPPRG00000019701	MTREX	99	65.209	Panthera_pardus
ENSCSAVG00000009304	-	100	68.387	ENSPTIG00000009313	MTREX	99	63.783	Panthera_tigris_altaica
ENSCSAVG00000009304	-	100	70.108	ENSPTRG00000016878	MTREX	99	65.396	Pan_troglodytes
ENSCSAVG00000009304	-	100	70.108	ENSPANG00000009697	MTREX	99	65.586	Papio_anubis
ENSCSAVG00000009304	-	100	70.708	ENSPKIG00000020833	mtrex	97	69.263	Paramormyrops_kingsleyae
ENSCSAVG00000009304	-	100	70.430	ENSPSIG00000012150	MTREX	99	66.475	Pelodiscus_sinensis
ENSCSAVG00000009304	-	100	68.737	ENSPMGG00000002582	mtrex	99	64.609	Periophthalmus_magnuspinnatus
ENSCSAVG00000009304	-	95	61.023	ENSPMAG00000009668	mtrex	99	57.344	Petromyzon_marinus
ENSCSAVG00000009304	-	100	70.430	ENSPCIG00000024730	MTREX	100	69.634	Phascolarctos_cinereus
ENSCSAVG00000009304	-	90	63.322	ENSPFOG00000003141	mtrex	99	67.803	Poecilia_formosa
ENSCSAVG00000009304	-	100	69.346	ENSPLAG00000021311	mtrex	99	64.813	Poecilia_latipinna
ENSCSAVG00000009304	-	100	68.891	ENSPMEG00000010597	mtrex	99	68.196	Poecilia_mexicana
ENSCSAVG00000009304	-	100	69.239	ENSPREG00000003089	mtrex	99	64.894	Poecilia_reticulata
ENSCSAVG00000009304	-	98	69.989	ENSPPYG00000015469	MTREX	97	65.213	Pongo_abelii
ENSCSAVG00000009304	-	89	62.069	ENSPCAG00000013120	MTREX	94	60.930	Procavia_capensis
ENSCSAVG00000009304	-	99	66.071	ENSPCOG00000018092	MTREX	88	84.615	Propithecus_coquereli
ENSCSAVG00000009304	-	100	69.892	ENSPVAG00000002445	MTREX	99	65.143	Pteropus_vampyrus
ENSCSAVG00000009304	-	99	69.173	ENSPNYG00000006164	mtrex	99	64.265	Pundamilia_nyererei
ENSCSAVG00000009304	-	100	69.742	ENSPNAG00000008794	mtrex	99	65.255	Pygocentrus_nattereri
ENSCSAVG00000009304	-	98	69.813	ENSRNOG00000010125	Mtrex	96	65.053	Rattus_norvegicus
ENSCSAVG00000009304	-	100	68.280	ENSRBIG00000034930	MTREX	99	63.973	Rhinopithecus_bieti
ENSCSAVG00000009304	-	100	70.108	ENSRROG00000039895	MTREX	99	65.589	Rhinopithecus_roxellana
ENSCSAVG00000009304	-	99	54.382	YJL050W	MTR4	99	50.789	Saccharomyces_cerevisiae
ENSCSAVG00000009304	-	100	70.000	ENSSBOG00000026693	MTREX	99	65.990	Saimiri_boliviensis_boliviensis
ENSCSAVG00000009304	-	100	70.430	ENSSHAG00000004600	MTREX	95	69.479	Sarcophilus_harrisii
ENSCSAVG00000009304	-	100	71.106	ENSSFOG00015014355	skiv2l2	99	67.084	Scleropages_formosus
ENSCSAVG00000009304	-	100	69.025	ENSSMAG00000007572	mtrex	99	64.395	Scophthalmus_maximus
ENSCSAVG00000009304	-	100	69.239	ENSSDUG00000023789	mtrex	95	68.328	Seriola_dumerili
ENSCSAVG00000009304	-	100	69.239	ENSSLDG00000006301	mtrex	96	68.083	Seriola_lalandi_dorsalis
ENSCSAVG00000009304	-	100	69.677	ENSSARG00000008387	MTREX	91	68.926	Sorex_araneus
ENSCSAVG00000009304	-	88	89.055	ENSSPUG00000007071	MTREX	84	89.055	Sphenodon_punctatus
ENSCSAVG00000009304	-	100	68.891	ENSSPAG00000011319	mtrex	94	68.196	Stegastes_partitus
ENSCSAVG00000009304	-	100	70.108	ENSSSCG00000016911	MTREX	99	65.491	Sus_scrofa
ENSCSAVG00000009304	-	100	69.892	ENSTGUG00000002480	MTREX	99	65.451	Taeniopygia_guttata
ENSCSAVG00000009304	-	99	69.173	ENSTRUG00000014571	mtrex	99	64.498	Takifugu_rubripes
ENSCSAVG00000009304	-	99	59.719	ENSTBEG00000007769	MTREX	87	60.437	Tupaia_belangeri
ENSCSAVG00000009304	-	100	70.000	ENSTTRG00000008678	MTREX	99	65.363	Tursiops_truncatus
ENSCSAVG00000009304	-	100	70.000	ENSUAMG00000023061	MTREX	99	65.366	Ursus_americanus
ENSCSAVG00000009304	-	100	69.421	ENSUMAG00000009373	MTREX	99	70.468	Ursus_maritimus
ENSCSAVG00000009304	-	92	79.406	ENSVPAG00000011174	MTREX	82	79.406	Vicugna_pacos
ENSCSAVG00000009304	-	100	70.000	ENSVVUG00000021337	MTREX	99	65.176	Vulpes_vulpes
ENSCSAVG00000009304	-	100	70.323	ENSXETG00000032798	MTREX	99	66.152	Xenopus_tropicalis
ENSCSAVG00000009304	-	100	69.099	ENSXMAG00000004799	mtrex	97	68.196	Xiphophorus_maculatus