EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000009321 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 3917 bases
Position: chrreftig_1:1731930-1735846
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000015853	RRM_5	PF13893.6	8.3e-09	1	1
ENSCSAVP00000015854	RRM_5	PF13893.6	6.2e-07	1	1
ENSCSAVP00000015853	RRM_1	PF00076.22	1.1e-39	1	2
ENSCSAVP00000015853	RRM_1	PF00076.22	1.1e-39	2	2
ENSCSAVP00000015854	RRM_1	PF00076.22	1.2e-26	1	2
ENSCSAVP00000015854	RRM_1	PF00076.22	1.2e-26	2	2
ENSCSAVP00000015852	RRM_1	PF00076.22	6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000016032	-	940	-	ENSCSAVP00000015853	272 (aa)	-	H2ZE37
ENSCSAVT00000016033	-	807	-	ENSCSAVP00000015854	173 (aa)	-	H2ZE38
ENSCSAVT00000016031	-	998	-	ENSCSAVP00000015852	216 (aa)	-	H2ZE36

Gene Model

Click here to download ENSCSAVG00000009321's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000009321's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000009321	-	51	30.303	ENSCSAVG00000004457	-	82	30.303
ENSCSAVG00000009321	-	76	32.468	ENSCSAVG00000003102	-	99	32.667
ENSCSAVG00000009321	-	77	42.254	ENSCSAVG00000003440	-	98	47.929
ENSCSAVG00000009321	-	58	45.902	ENSCSAVG00000004539	-	53	45.902
ENSCSAVG00000009321	-	66	37.895	ENSCSAVG00000007662	-	63	37.895
ENSCSAVG00000009321	-	65	37.179	ENSCSAVG00000004246	-	63	32.468
ENSCSAVG00000009321	-	65	35.443	ENSCSAVG00000007538	-	53	35.443
ENSCSAVG00000009321	-	56	39.655	ENSCSAVG00000000472	-	79	38.983
ENSCSAVG00000009321	-	50	33.566	ENSCSAVG00000007809	-	73	33.566

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000009321	-	66	40.000	FBgn0038345	CG5213	76	34.555	Drosophila_melanogaster