EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000009580 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 2853 bases
Position: chrreftig_48:1012593-1015445
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000016280	PRP38	PF03371.15	2.7e-62	1	1
ENSCSAVP00000016281	PRP38	PF03371.15	2.7e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000016461	-	1170	-	ENSCSAVP00000016280	302 (aa)	-	H2ZFB4
ENSCSAVT00000016463	-	512	-	ENSCSAVP00000016282	83 (aa)	-	H2ZFB6
ENSCSAVT00000016462	-	1140	-	ENSCSAVP00000016281	302 (aa)	-	H2ZFB4

Gene Model

Click here to download ENSCSAVG00000009580's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000009580's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000009580	-	78	65.678	ENSG00000134748	PRPF38A	67	71.429	Homo_sapiens
ENSCSAVG00000009580	-	71	72.350	ENSAPOG00000011652	prpf38a	75	70.130	Acanthochromis_polyacanthus
ENSCSAVG00000009580	-	78	65.678	ENSAMEG00000009319	PRPF38A	67	71.429	Ailuropoda_melanoleuca
ENSCSAVG00000009580	-	71	70.968	ENSACIG00000012292	prpf38a	76	68.831	Amphilophus_citrinellus
ENSCSAVG00000009580	-	71	72.350	ENSAOCG00000018004	prpf38a	75	70.130	Amphiprion_ocellaris
ENSCSAVG00000009580	-	71	72.350	ENSAPEG00000021414	prpf38a	75	70.130	Amphiprion_percula
ENSCSAVG00000009580	-	62	75.401	ENSATEG00000004608	prpf38a	75	69.264	Anabas_testudineus
ENSCSAVG00000009580	-	57	61.988	ENSAPLG00000005827	PRPF38A	61	67.763	Anas_platyrhynchos
ENSCSAVG00000009580	-	78	65.678	ENSACAG00000008249	PRPF38A	70	70.507	Anolis_carolinensis
ENSCSAVG00000009580	-	78	65.678	ENSANAG00000027839	PRPF38A	67	71.429	Aotus_nancymaae
ENSCSAVG00000009580	-	77	43.750	ENSANAG00000029204	-	66	45.327	Aotus_nancymaae
ENSCSAVG00000009580	-	71	71.889	ENSACLG00000021595	prpf38a	77	69.658	Astatotilapia_calliptera
ENSCSAVG00000009580	-	71	72.350	ENSAMXG00000029274	prpf38a	74	70.130	Astyanax_mexicanus
ENSCSAVG00000009580	-	78	66.102	ENSBTAG00000002720	PRPF38A	95	62.414	Bos_taurus
ENSCSAVG00000009580	-	64	64.948	WBGene00008380	prp-38	55	67.797	Caenorhabditis_elegans
ENSCSAVG00000009580	-	78	66.102	ENSCJAG00000021594	PRPF38A	71	71.362	Callithrix_jacchus
ENSCSAVG00000009580	-	78	65.678	ENSCAFG00000003740	PRPF38A	67	71.429	Canis_familiaris
ENSCSAVG00000009580	-	78	65.678	ENSCAFG00020010939	PRPF38A	67	71.429	Canis_lupus_dingo
ENSCSAVG00000009580	-	78	65.678	ENSCHIG00000024730	PRPF38A	67	71.429	Capra_hircus
ENSCSAVG00000009580	-	64	62.176	ENSTSYG00000031994	-	59	68.862	Carlito_syrichta
ENSCSAVG00000009580	-	78	65.678	ENSTSYG00000009868	-	67	71.429	Carlito_syrichta
ENSCSAVG00000009580	-	78	66.102	ENSCPOG00000005079	PRPF38A	68	71.429	Cavia_porcellus
ENSCSAVG00000009580	-	78	65.678	ENSCCAG00000026502	PRPF38A	68	71.429	Cebus_capucinus
ENSCSAVG00000009580	-	63	47.090	ENSCATG00000044190	-	73	43.612	Cercocebus_atys
ENSCSAVG00000009580	-	78	65.678	ENSCATG00000032296	PRPF38A	67	71.429	Cercocebus_atys
ENSCSAVG00000009580	-	78	65.678	ENSCLAG00000005816	PRPF38A	67	71.429	Chinchilla_lanigera
ENSCSAVG00000009580	-	78	65.678	ENSCPBG00000014791	PRPF38A	70	70.507	Chrysemys_picta_bellii
ENSCSAVG00000009580	-	78	65.678	ENSCANG00000032608	PRPF38A	70	71.429	Colobus_angolensis_palliatus
ENSCSAVG00000009580	-	78	65.678	ENSCGRG00001018502	-	67	71.429	Cricetulus_griseus_chok1gshd
ENSCSAVG00000009580	-	62	64.362	ENSCGRG00001002557	-	70	62.201	Cricetulus_griseus_chok1gshd
ENSCSAVG00000009580	-	78	65.678	ENSCGRG00000014868	Prpf38a	67	71.429	Cricetulus_griseus_crigri
ENSCSAVG00000009580	-	62	75.532	ENSCSEG00000001269	prpf38a	79	68.831	Cynoglossus_semilaevis
ENSCSAVG00000009580	-	62	76.596	ENSCVAG00000012305	prpf38a	75	69.697	Cyprinodon_variegatus
ENSCSAVG00000009580	-	62	76.064	ENSDARG00000039213	prpf38a	100	56.550	Danio_rerio
ENSCSAVG00000009580	-	78	65.678	ENSDNOG00000042326	PRPF38A	68	71.429	Dasypus_novemcinctus
ENSCSAVG00000009580	-	78	53.390	ENSDORG00000023857	-	62	57.619	Dipodomys_ordii
ENSCSAVG00000009580	-	77	64.583	ENSDORG00000023691	-	79	65.351	Dipodomys_ordii
ENSCSAVG00000009580	-	77	64.583	ENSDORG00000025371	-	79	65.351	Dipodomys_ordii
ENSCSAVG00000009580	-	89	52.843	FBgn0050342	Prp38	94	54.194	Drosophila_melanogaster
ENSCSAVG00000009580	-	75	68.067	ENSEBUG00000012588	prpf38a	66	73.684	Eptatretus_burgeri
ENSCSAVG00000009580	-	78	65.678	ENSEASG00005014427	PRPF38A	67	71.429	Equus_asinus_asinus
ENSCSAVG00000009580	-	78	65.678	ENSECAG00000022628	PRPF38A	67	71.429	Equus_caballus
ENSCSAVG00000009580	-	62	76.064	ENSELUG00000021094	prpf38a	78	68.831	Esox_lucius
ENSCSAVG00000009580	-	78	65.678	ENSFCAG00000002518	PRPF38A	67	71.429	Felis_catus
ENSCSAVG00000009580	-	62	73.936	ENSFALG00000003612	-	75	68.750	Ficedula_albicollis
ENSCSAVG00000009580	-	65	63.959	ENSFALG00000005598	-	65	70.455	Ficedula_albicollis
ENSCSAVG00000009580	-	78	65.678	ENSFDAG00000011287	PRPF38A	68	71.429	Fukomys_damarensis
ENSCSAVG00000009580	-	62	76.064	ENSFHEG00000014317	prpf38a	78	69.697	Fundulus_heteroclitus
ENSCSAVG00000009580	-	55	77.711	ENSGMOG00000011384	prpf38a	54	77.711	Gadus_morhua
ENSCSAVG00000009580	-	78	66.949	ENSGALG00000010627	PRPF38A	70	71.889	Gallus_gallus
ENSCSAVG00000009580	-	62	76.064	ENSGAFG00000012422	prpf38a	75	68.398	Gambusia_affinis
ENSCSAVG00000009580	-	71	69.863	ENSGACG00000005423	prpf38a	75	67.811	Gasterosteus_aculeatus
ENSCSAVG00000009580	-	78	65.678	ENSGAGG00000020547	PRPF38A	70	70.507	Gopherus_agassizii
ENSCSAVG00000009580	-	78	65.678	ENSGGOG00000003940	PRPF38A	67	71.429	Gorilla_gorilla
ENSCSAVG00000009580	-	63	77.249	ENSHBUG00000020572	prpf38a	85	75.377	Haplochromis_burtoni
ENSCSAVG00000009580	-	74	58.929	ENSHGLG00000007918	-	68	62.201	Heterocephalus_glaber_female
ENSCSAVG00000009580	-	78	65.678	ENSHGLG00000000475	PRPF38A	67	71.429	Heterocephalus_glaber_female
ENSCSAVG00000009580	-	74	58.929	ENSHGLG00100003928	-	68	62.201	Heterocephalus_glaber_male
ENSCSAVG00000009580	-	78	65.678	ENSHGLG00100008935	PRPF38A	67	71.429	Heterocephalus_glaber_male
ENSCSAVG00000009580	-	90	57.762	ENSHCOG00000020781	prpf38a	64	72.059	Hippocampus_comes
ENSCSAVG00000009580	-	74	68.103	ENSIPUG00000005757	prpf38a	95	57.770	Ictalurus_punctatus
ENSCSAVG00000009580	-	78	65.678	ENSSTOG00000015610	PRPF38A	67	71.429	Ictidomys_tridecemlineatus
ENSCSAVG00000009580	-	78	65.678	ENSJJAG00000015811	Prpf38a	67	71.429	Jaculus_jaculus
ENSCSAVG00000009580	-	62	76.064	ENSKMAG00000006588	prpf38a	75	69.264	Kryptolebias_marmoratus
ENSCSAVG00000009580	-	95	59.247	ENSLBEG00000020585	prpf38a	86	58.885	Labrus_bergylta
ENSCSAVG00000009580	-	71	70.046	ENSLACG00000011495	PRPF38A	74	68.534	Latimeria_chalumnae
ENSCSAVG00000009580	-	63	76.190	ENSLOCG00000006262	prpf38a	75	66.810	Lepisosteus_oculatus
ENSCSAVG00000009580	-	78	65.678	ENSLAFG00000025862	PRPF38A	67	71.429	Loxodonta_africana
ENSCSAVG00000009580	-	78	66.102	ENSMFAG00000039449	PRPF38A	71	71.362	Macaca_fascicularis
ENSCSAVG00000009580	-	65	63.265	ENSMMUG00000014333	PRPF38A	61	69.412	Macaca_mulatta
ENSCSAVG00000009580	-	63	48.148	ENSMNEG00000040242	-	73	44.493	Macaca_nemestrina
ENSCSAVG00000009580	-	78	65.678	ENSMNEG00000031221	PRPF38A	67	71.429	Macaca_nemestrina
ENSCSAVG00000009580	-	78	65.678	ENSMLEG00000041105	PRPF38A	67	71.429	Mandrillus_leucophaeus
ENSCSAVG00000009580	-	71	71.889	ENSMAMG00000015431	prpf38a	78	69.697	Mastacembelus_armatus
ENSCSAVG00000009580	-	71	71.889	ENSMZEG00005017838	prpf38a	75	69.658	Maylandia_zebra
ENSCSAVG00000009580	-	78	66.949	ENSMGAG00000011176	PRPF38A	73	71.889	Meleagris_gallopavo
ENSCSAVG00000009580	-	78	62.712	ENSMAUG00000018029	-	81	67.606	Mesocricetus_auratus
ENSCSAVG00000009580	-	78	65.678	ENSMICG00000014193	PRPF38A	67	71.429	Microcebus_murinus
ENSCSAVG00000009580	-	78	65.678	ENSMOCG00000013080	Prpf38a	67	71.429	Microtus_ochrogaster
ENSCSAVG00000009580	-	73	69.196	ENSMMOG00000016972	prpf38a	81	68.398	Mola_mola
ENSCSAVG00000009580	-	78	66.102	ENSMODG00000000644	PRPF38A	67	70.142	Monodelphis_domestica
ENSCSAVG00000009580	-	71	70.968	ENSMALG00000019363	prpf38a	73	68.831	Monopterus_albus
ENSCSAVG00000009580	-	78	66.102	MGP_CAROLIEiJ_G0026269	Prpf38a	67	71.905	Mus_caroli
ENSCSAVG00000009580	-	78	66.102	ENSMUSG00000063800	Prpf38a	67	71.905	Mus_musculus
ENSCSAVG00000009580	-	78	66.102	MGP_PahariEiJ_G0028602	Prpf38a	67	71.905	Mus_pahari
ENSCSAVG00000009580	-	78	66.102	MGP_SPRETEiJ_G0027238	Prpf38a	98	73.367	Mus_spretus
ENSCSAVG00000009580	-	78	65.678	ENSMPUG00000006896	PRPF38A	67	71.429	Mustela_putorius_furo
ENSCSAVG00000009580	-	78	66.102	ENSNGAG00000011884	Prpf38a	68	71.429	Nannospalax_galili
ENSCSAVG00000009580	-	71	70.968	ENSNBRG00000004013	prpf38a	74	68.803	Neolamprologus_brichardi
ENSCSAVG00000009580	-	63	49.215	ENSNLEG00000012592	-	63	48.571	Nomascus_leucogenys
ENSCSAVG00000009580	-	71	63.850	ENSNLEG00000017999	PRPF38A	60	70.053	Nomascus_leucogenys
ENSCSAVG00000009580	-	62	42.553	ENSNLEG00000033398	-	53	42.714	Nomascus_leucogenys
ENSCSAVG00000009580	-	78	64.407	ENSMEUG00000003860	PRPF38A	59	75.410	Notamacropus_eugenii
ENSCSAVG00000009580	-	78	65.678	ENSOPRG00000008985	PRPF38A	89	71.362	Ochotona_princeps
ENSCSAVG00000009580	-	78	65.678	ENSODEG00000005869	PRPF38A	67	71.429	Octodon_degus
ENSCSAVG00000009580	-	71	71.429	ENSONIG00000007816	prpf38a	75	69.231	Oreochromis_niloticus
ENSCSAVG00000009580	-	62	35.263	ENSOANG00000009541	-	68	37.500	Ornithorhynchus_anatinus
ENSCSAVG00000009580	-	78	65.678	ENSOCUG00000000963	PRPF38A	67	71.429	Oryctolagus_cuniculus
ENSCSAVG00000009580	-	71	70.507	ENSORLG00000013485	prpf38a	82	67.100	Oryzias_latipes
ENSCSAVG00000009580	-	71	70.507	ENSORLG00020002130	prpf38a	82	67.100	Oryzias_latipes_hni
ENSCSAVG00000009580	-	76	67.521	ENSORLG00015021393	prpf38a	79	67.544	Oryzias_latipes_hsok
ENSCSAVG00000009580	-	71	70.046	ENSOMEG00000016333	prpf38a	75	66.667	Oryzias_melastigma
ENSCSAVG00000009580	-	78	65.678	ENSOGAG00000005423	PRPF38A	67	71.429	Otolemur_garnettii
ENSCSAVG00000009580	-	78	65.678	ENSOARG00000005373	PRPF38A	67	71.429	Ovis_aries
ENSCSAVG00000009580	-	92	49.834	ENSPPAG00000033867	-	65	57.346	Pan_paniscus
ENSCSAVG00000009580	-	78	65.678	ENSPPAG00000030905	PRPF38A	67	71.429	Pan_paniscus
ENSCSAVG00000009580	-	78	65.678	ENSPPRG00000013268	PRPF38A	67	71.429	Panthera_pardus
ENSCSAVG00000009580	-	78	65.678	ENSPTIG00000015419	PRPF38A	67	71.429	Panthera_tigris_altaica
ENSCSAVG00000009580	-	78	66.102	ENSPTRG00000000739	PRPF38A	71	71.362	Pan_troglodytes
ENSCSAVG00000009580	-	78	65.678	ENSPANG00000015483	PRPF38A	67	71.429	Papio_anubis
ENSCSAVG00000009580	-	62	77.128	ENSPKIG00000011439	prpf38a	75	69.697	Paramormyrops_kingsleyae
ENSCSAVG00000009580	-	78	66.949	ENSPSIG00000017487	PRPF38A	68	69.369	Pelodiscus_sinensis
ENSCSAVG00000009580	-	71	68.664	ENSPMGG00000021352	prpf38a	79	65.368	Periophthalmus_magnuspinnatus
ENSCSAVG00000009580	-	78	65.678	ENSPEMG00000023277	-	67	71.429	Peromyscus_maniculatus_bairdii
ENSCSAVG00000009580	-	75	63.596	ENSPEMG00000011212	-	66	66.038	Peromyscus_maniculatus_bairdii
ENSCSAVG00000009580	-	78	66.102	ENSPCIG00000022369	-	67	70.142	Phascolarctos_cinereus
ENSCSAVG00000009580	-	62	76.064	ENSPFOG00000004248	prpf38a	75	68.398	Poecilia_formosa
ENSCSAVG00000009580	-	62	76.064	ENSPLAG00000010328	prpf38a	75	68.398	Poecilia_latipinna
ENSCSAVG00000009580	-	62	76.064	ENSPMEG00000011804	prpf38a	75	68.398	Poecilia_mexicana
ENSCSAVG00000009580	-	62	76.064	ENSPREG00000002835	prpf38a	61	74.372	Poecilia_reticulata
ENSCSAVG00000009580	-	78	56.846	ENSPPYG00000001348	PRPF38A	67	61.395	Pongo_abelii
ENSCSAVG00000009580	-	78	66.102	ENSPCAG00000013328	PRPF38A	67	71.905	Procavia_capensis
ENSCSAVG00000009580	-	88	52.381	ENSPCOG00000020709	-	68	64.500	Propithecus_coquereli
ENSCSAVG00000009580	-	78	65.678	ENSPCOG00000016387	-	67	71.429	Propithecus_coquereli
ENSCSAVG00000009580	-	78	65.678	ENSPVAG00000009803	PRPF38A	67	71.429	Pteropus_vampyrus
ENSCSAVG00000009580	-	71	71.889	ENSPNYG00000005571	prpf38a	75	69.658	Pundamilia_nyererei
ENSCSAVG00000009580	-	71	73.733	ENSPNAG00000010399	prpf38a	74	71.429	Pygocentrus_nattereri
ENSCSAVG00000009580	-	78	66.102	ENSRNOG00000009451	Prpf38a	67	71.905	Rattus_norvegicus
ENSCSAVG00000009580	-	78	65.678	ENSRBIG00000036442	PRPF38A	70	71.429	Rhinopithecus_bieti
ENSCSAVG00000009580	-	76	51.373	ENSRROG00000040003	-	69	58.685	Rhinopithecus_roxellana
ENSCSAVG00000009580	-	78	65.678	ENSRROG00000032788	PRPF38A	67	71.429	Rhinopithecus_roxellana
ENSCSAVG00000009580	-	78	65.678	ENSSBOG00000019515	PRPF38A	67	71.429	Saimiri_boliviensis_boliviensis
ENSCSAVG00000009580	-	77	58.921	ENSSHAG00000006029	-	75	60.714	Sarcophilus_harrisii
ENSCSAVG00000009580	-	64	63.918	ENSSHAG00000006906	-	62	68.639	Sarcophilus_harrisii
ENSCSAVG00000009580	-	71	72.018	ENSSFOG00015013572	prpf38a	75	69.828	Scleropages_formosus
ENSCSAVG00000009580	-	71	69.585	ENSSMAG00000015379	prpf38a	75	67.532	Scophthalmus_maximus
ENSCSAVG00000009580	-	71	70.968	ENSSDUG00000001324	prpf38a	75	68.831	Seriola_dumerili
ENSCSAVG00000009580	-	71	70.968	ENSSLDG00000014803	prpf38a	75	68.831	Seriola_lalandi_dorsalis
ENSCSAVG00000009580	-	78	46.610	ENSSARG00000014458	PRPF38A	67	49.524	Sorex_araneus
ENSCSAVG00000009580	-	78	67.373	ENSSPUG00000013259	PRPF38A	68	71.171	Sphenodon_punctatus
ENSCSAVG00000009580	-	71	58.525	ENSSPAG00000010449	prpf38a	72	57.143	Stegastes_partitus
ENSCSAVG00000009580	-	78	65.678	ENSSSCG00000028288	PRPF38A	67	71.429	Sus_scrofa
ENSCSAVG00000009580	-	79	63.445	ENSTGUG00000008995	PRPF38A	70	68.203	Taeniopygia_guttata
ENSCSAVG00000009580	-	71	70.046	ENSTRUG00000003374	prpf38a	71	67.965	Takifugu_rubripes
ENSCSAVG00000009580	-	71	68.493	ENSTNIG00000005533	prpf38a	75	66.524	Tetraodon_nigroviridis
ENSCSAVG00000009580	-	78	65.678	ENSTBEG00000000725	PRPF38A	67	71.429	Tupaia_belangeri
ENSCSAVG00000009580	-	78	65.678	ENSTTRG00000016139	PRPF38A	67	71.429	Tursiops_truncatus
ENSCSAVG00000009580	-	78	65.678	ENSUAMG00000000625	PRPF38A	67	71.429	Ursus_americanus
ENSCSAVG00000009580	-	78	65.678	ENSUMAG00000022674	PRPF38A	67	71.429	Ursus_maritimus
ENSCSAVG00000009580	-	78	66.102	ENSVPAG00000000907	PRPF38A	68	71.831	Vicugna_pacos
ENSCSAVG00000009580	-	78	65.678	ENSVVUG00000004475	PRPF38A	67	71.429	Vulpes_vulpes
ENSCSAVG00000009580	-	62	75.532	ENSXETG00000008060	prpf38a	74	69.130	Xenopus_tropicalis
ENSCSAVG00000009580	-	62	74.211	ENSXCOG00000007393	prpf38a	77	66.953	Xiphophorus_couchianus
ENSCSAVG00000009580	-	62	76.064	ENSXMAG00000026143	prpf38a	75	68.398	Xiphophorus_maculatus