EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000009663 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 4985 bases
Position: chrreftig_9:1214850-1219834
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000016431	GTP_EFTU	PF00009.27	1.1e-52	1	1
ENSCSAVP00000016431	GTP_EFTU_D2	PF03144.25	3e-15	1	1
ENSCSAVP00000016431	GTP_EFTU_D3	PF03143.17	1.1e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000016612	-	1592	-	ENSCSAVP00000016431	461 (aa)	-	H2ZFR5

Gene Model

Click here to download ENSCSAVG00000009663's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000009663's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000009663	-	99	80.911	ENSCSAVG00000006357	-	96	88.235
ENSCSAVG00000009663	-	95	34.163	ENSCSAVG00000010206	-	83	33.864
ENSCSAVG00000009663	-	98	77.384	ENSCSAVG00000001085	-	90	77.354
ENSCSAVG00000009663	-	98	84.835	ENSCSAVG00000003196	-	98	84.835
ENSCSAVG00000009663	-	94	37.500	ENSCSAVG00000002297	-	69	37.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000009663	-	98	79.560	ENSAPOG00000004714	-	98	79.560	Acanthochromis_polyacanthus
ENSCSAVG00000009663	-	89	81.250	ENSACIG00000001219	-	97	81.527	Amphilophus_citrinellus
ENSCSAVG00000009663	-	100	81.505	ENSAOCG00000022039	-	98	81.538	Amphiprion_ocellaris
ENSCSAVG00000009663	-	87	80.788	ENSAOCG00000022002	-	98	80.788	Amphiprion_ocellaris
ENSCSAVG00000009663	-	100	81.505	ENSAPEG00000016361	-	98	81.538	Amphiprion_percula
ENSCSAVG00000009663	-	98	82.637	ENSATEG00000003244	-	95	82.637	Anabas_testudineus
ENSCSAVG00000009663	-	100	82.151	ENSACLG00000022560	-	98	82.418	Astatotilapia_calliptera
ENSCSAVG00000009663	-	100	79.785	WBGene00001169	eef-1A.2	98	80.000	Caenorhabditis_elegans
ENSCSAVG00000009663	-	100	79.785	WBGene00001168	eef-1A.1	98	80.000	Caenorhabditis_elegans
ENSCSAVG00000009663	-	99	80.870	ENSCING00000021478	-	97	81.375	Ciona_intestinalis
ENSCSAVG00000009663	-	99	78.065	ENSCING00000007703	-	97	77.802	Ciona_intestinalis
ENSCSAVG00000009663	-	97	80.879	ENSCING00000005126	-	97	80.879	Ciona_intestinalis
ENSCSAVG00000009663	-	97	81.236	ENSCING00000018894	-	97	81.678	Ciona_intestinalis
ENSCSAVG00000009663	-	98	81.319	ENSCSEG00000008011	-	98	81.319	Cynoglossus_semilaevis
ENSCSAVG00000009663	-	89	79.036	ENSCSEG00000007992	-	97	78.818	Cynoglossus_semilaevis
ENSCSAVG00000009663	-	89	78.365	ENSCSEG00000007972	-	98	78.325	Cynoglossus_semilaevis
ENSCSAVG00000009663	-	98	82.637	ENSCVAG00000019356	-	98	82.637	Cyprinodon_variegatus
ENSCSAVG00000009663	-	98	78.022	FBgn0000557	eEF1alpha2	98	78.022	Drosophila_melanogaster
ENSCSAVG00000009663	-	100	79.785	FBgn0284245	eEF1alpha1	98	80.000	Drosophila_melanogaster
ENSCSAVG00000009663	-	99	77.174	ENSEBUG00000015814	-	96	78.153	Eptatretus_burgeri
ENSCSAVG00000009663	-	100	83.441	ENSFHEG00000015054	-	98	83.516	Fundulus_heteroclitus
ENSCSAVG00000009663	-	98	81.978	ENSGAFG00000014646	-	98	81.978	Gambusia_affinis
ENSCSAVG00000009663	-	98	81.319	ENSGACG00000002182	-	98	81.319	Gasterosteus_aculeatus
ENSCSAVG00000009663	-	100	81.075	ENSGACG00000002143	-	98	81.319	Gasterosteus_aculeatus
ENSCSAVG00000009663	-	54	79.051	ENSHBUG00000017166	-	91	79.424	Haplochromis_burtoni
ENSCSAVG00000009663	-	97	81.818	ENSHCOG00000008468	-	97	81.818	Hippocampus_comes
ENSCSAVG00000009663	-	99	80.217	ENSHCOG00000008489	-	97	80.044	Hippocampus_comes
ENSCSAVG00000009663	-	99	79.526	ENSLBEG00000002955	-	98	79.560	Labrus_bergylta
ENSCSAVG00000009663	-	98	81.319	ENSLBEG00000002759	-	98	81.319	Labrus_bergylta
ENSCSAVG00000009663	-	98	82.418	ENSMAMG00000007715	-	98	82.418	Mastacembelus_armatus
ENSCSAVG00000009663	-	99	71.584	ENSMMOG00000018160	-	93	84.270	Mola_mola
ENSCSAVG00000009663	-	99	79.526	ENSMMOG00000001106	-	98	79.560	Mola_mola
ENSCSAVG00000009663	-	98	81.538	ENSMMOG00000001165	-	94	88.764	Mola_mola
ENSCSAVG00000009663	-	99	72.234	ENSNBRG00000017346	-	97	72.284	Neolamprologus_brichardi
ENSCSAVG00000009663	-	76	79.437	ENSONIG00000017760	-	98	79.437	Oreochromis_niloticus
ENSCSAVG00000009663	-	98	82.637	ENSORLG00000007614	eef1a	98	82.637	Oryzias_latipes
ENSCSAVG00000009663	-	100	83.656	ENSORLG00015002397	-	98	83.736	Oryzias_latipes_hsok
ENSCSAVG00000009663	-	98	82.857	ENSOMEG00000018226	-	98	82.857	Oryzias_melastigma
ENSCSAVG00000009663	-	98	83.077	ENSPMGG00000023911	-	94	90.909	Periophthalmus_magnuspinnatus
ENSCSAVG00000009663	-	93	50.115	ENSPMGG00000022427	-	97	61.250	Periophthalmus_magnuspinnatus
ENSCSAVG00000009663	-	98	81.978	ENSPFOG00000003924	-	98	81.034	Poecilia_formosa
ENSCSAVG00000009663	-	98	81.978	ENSPLAG00000004316	-	98	81.978	Poecilia_latipinna
ENSCSAVG00000009663	-	98	81.978	ENSPMEG00000001010	-	98	81.978	Poecilia_mexicana
ENSCSAVG00000009663	-	100	84.086	ENSPREG00000008243	-	98	84.176	Poecilia_reticulata
ENSCSAVG00000009663	-	100	82.151	ENSPNYG00000007263	-	98	82.418	Pundamilia_nyererei
ENSCSAVG00000009663	-	96	79.018	YBR118W	TEF2	98	78.681	Saccharomyces_cerevisiae
ENSCSAVG00000009663	-	96	79.018	YPR080W	TEF1	98	78.681	Saccharomyces_cerevisiae
ENSCSAVG00000009663	-	52	78.601	ENSSMAG00000016277	-	94	79.888	Scophthalmus_maximus
ENSCSAVG00000009663	-	98	73.375	ENSSMAG00000018469	-	98	73.375	Scophthalmus_maximus
ENSCSAVG00000009663	-	98	82.418	ENSSDUG00000008198	-	98	82.418	Seriola_dumerili
ENSCSAVG00000009663	-	97	81.596	ENSSPAG00000001710	-	97	81.596	Stegastes_partitus
ENSCSAVG00000009663	-	98	81.319	ENSTRUG00000005727	ef-1a	98	81.319	Takifugu_rubripes
ENSCSAVG00000009663	-	99	79.310	ENSTRUG00000005066	-	97	79.601	Takifugu_rubripes
ENSCSAVG00000009663	-	96	78.971	ENSTNIG00000002617	-	93	78.971	Tetraodon_nigroviridis
ENSCSAVG00000009663	-	98	81.538	ENSTNIG00000002619	-	98	81.538	Tetraodon_nigroviridis
ENSCSAVG00000009663	-	98	81.978	ENSXCOG00000001542	-	94	90.909	Xiphophorus_couchianus