EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000009793 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 6149 bases
Position: chrreftig_14:374457-380605
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000016664	NOG1	PF06858.14	3.7e-25	1	1
ENSCSAVP00000016665	NOG1	PF06858.14	4.3e-25	1	1
ENSCSAVP00000016667	NOG1	PF06858.14	7.4e-25	1	1
ENSCSAVP00000016666	NOG1	PF06858.14	8.7e-25	1	1
ENSCSAVP00000016664	MMR_HSR1	PF01926.23	1.4e-19	1	1
ENSCSAVP00000016665	MMR_HSR1	PF01926.23	2.3e-19	1	1
ENSCSAVP00000016667	MMR_HSR1	PF01926.23	2.7e-19	1	1
ENSCSAVP00000016666	MMR_HSR1	PF01926.23	3.2e-19	1	1
ENSCSAVP00000016667	NOGCT	PF08155.11	7.8e-20	1	1
ENSCSAVP00000016666	NOGCT	PF08155.11	8.8e-20	1	1
ENSCSAVP00000016665	NOGCT	PF08155.11	8.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000016848	-	1916	-	ENSCSAVP00000016667	583 (aa)	-	H2ZGF1
ENSCSAVT00000016847	-	1995	-	ENSCSAVP00000016666	650 (aa)	-	H2ZGF0
ENSCSAVT00000016846	-	1312	-	ENSCSAVP00000016665	422 (aa)	-	H2ZGE9
ENSCSAVT00000016845	-	1742	-	ENSCSAVP00000016664	311 (aa)	-	H2ZGE8

Gene Model

Click here to download ENSCSAVG00000009793's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000009793's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000009793	-	99	78.317	ENSG00000107937	GTPBP4	100	82.857	Homo_sapiens
ENSCSAVG00000009793	-	99	79.935	ENSAPOG00000020433	gtpbp4	100	61.774	Acanthochromis_polyacanthus
ENSCSAVG00000009793	-	99	77.023	ENSAMEG00000001845	GTPBP4	100	61.963	Ailuropoda_melanoleuca
ENSCSAVG00000009793	-	98	80.263	ENSACIG00000018629	gtpbp4	100	61.715	Amphilophus_citrinellus
ENSCSAVG00000009793	-	99	79.935	ENSAOCG00000000427	gtpbp4	93	64.319	Amphiprion_ocellaris
ENSCSAVG00000009793	-	99	79.935	ENSAPEG00000002544	gtpbp4	100	64.472	Amphiprion_percula
ENSCSAVG00000009793	-	99	79.288	ENSATEG00000012635	gtpbp4	95	64.036	Anabas_testudineus
ENSCSAVG00000009793	-	56	49.412	ENSAPLG00000013790	-	100	50.000	Anas_platyrhynchos
ENSCSAVG00000009793	-	99	79.288	ENSACAG00000002943	GTPBP4	100	62.980	Anolis_carolinensis
ENSCSAVG00000009793	-	84	71.212	ENSANAG00000029209	-	100	68.599	Aotus_nancymaae
ENSCSAVG00000009793	-	97	71.148	ENSANAG00000022188	-	99	56.260	Aotus_nancymaae
ENSCSAVG00000009793	-	99	79.612	ENSACLG00000026330	gtpbp4	92	86.000	Astatotilapia_calliptera
ENSCSAVG00000009793	-	99	79.612	ENSAMXG00000019771	gtpbp4	100	64.165	Astyanax_mexicanus
ENSCSAVG00000009793	-	99	78.317	ENSBTAG00000014917	GTPBP4	100	62.058	Bos_taurus
ENSCSAVG00000009793	-	50	82.803	ENSBTAG00000054119	-	89	83.871	Bos_taurus
ENSCSAVG00000009793	-	99	68.730	WBGene00020297	nog-1	99	55.442	Caenorhabditis_elegans
ENSCSAVG00000009793	-	99	77.524	ENSCJAG00000022962	-	100	62.310	Callithrix_jacchus
ENSCSAVG00000009793	-	99	78.502	ENSCJAG00000008494	-	100	63.077	Callithrix_jacchus
ENSCSAVG00000009793	-	84	76.718	ENSCAFG00000005536	GTPBP4	100	61.322	Canis_familiaris
ENSCSAVG00000009793	-	99	77.670	ENSCAFG00020004307	GTPBP4	100	62.883	Canis_lupus_dingo
ENSCSAVG00000009793	-	99	78.317	ENSCHIG00000018346	GTPBP4	100	62.058	Capra_hircus
ENSCSAVG00000009793	-	99	77.994	ENSTSYG00000004977	GTPBP4	100	62.195	Carlito_syrichta
ENSCSAVG00000009793	-	95	71.088	ENSCAPG00000002134	GTPBP4	97	55.763	Cavia_aperea
ENSCSAVG00000009793	-	99	77.670	ENSCPOG00000013736	GTPBP4	100	62.826	Cavia_porcellus
ENSCSAVG00000009793	-	99	53.074	ENSCCAG00000030115	-	100	47.077	Cebus_capucinus
ENSCSAVG00000009793	-	99	77.994	ENSCCAG00000021627	-	92	62.826	Cebus_capucinus
ENSCSAVG00000009793	-	99	78.317	ENSCATG00000004303	GTPBP4	100	62.290	Cercocebus_atys
ENSCSAVG00000009793	-	99	78.317	ENSCLAG00000011323	GTPBP4	100	62.980	Chinchilla_lanigera
ENSCSAVG00000009793	-	99	78.317	ENSCSAG00000014097	GTPBP4	100	62.443	Chlorocebus_sabaeus
ENSCSAVG00000009793	-	99	77.346	ENSCHOG00000012602	GTPBP4	88	73.315	Choloepus_hoffmanni
ENSCSAVG00000009793	-	99	79.288	ENSCPBG00000008398	GTPBP4	100	63.190	Chrysemys_picta_bellii
ENSCSAVG00000009793	-	99	97.735	ENSCING00000001957	-	100	89.708	Ciona_intestinalis
ENSCSAVG00000009793	-	99	77.994	ENSCANG00000014168	GTPBP4	100	61.212	Colobus_angolensis_palliatus
ENSCSAVG00000009793	-	99	78.964	ENSCGRG00001013765	Gtpbp4	100	63.748	Cricetulus_griseus_chok1gshd
ENSCSAVG00000009793	-	99	78.964	ENSCGRG00000012171	Gtpbp4	100	63.748	Cricetulus_griseus_crigri
ENSCSAVG00000009793	-	97	79.801	ENSCSEG00000007352	gtpbp4	100	61.103	Cynoglossus_semilaevis
ENSCSAVG00000009793	-	99	78.641	ENSCVAG00000008993	gtpbp4	100	62.519	Cyprinodon_variegatus
ENSCSAVG00000009793	-	99	80.259	ENSDARG00000018961	gtpbp4	100	63.817	Danio_rerio
ENSCSAVG00000009793	-	72	52.273	ENSDNOG00000006746	GTPBP4	100	52.822	Dasypus_novemcinctus
ENSCSAVG00000009793	-	83	81.905	ENSDORG00000010884	Gtpbp4	96	81.905	Dipodomys_ordii
ENSCSAVG00000009793	-	99	76.358	FBgn0028473	Non1	100	55.657	Drosophila_melanogaster
ENSCSAVG00000009793	-	99	68.608	ENSETEG00000016840	-	70	65.768	Echinops_telfairi
ENSCSAVG00000009793	-	95	75.932	ENSEBUG00000010311	gtpbp4	99	53.261	Eptatretus_burgeri
ENSCSAVG00000009793	-	99	78.317	ENSEASG00005019082	GTPBP4	100	62.577	Equus_asinus_asinus
ENSCSAVG00000009793	-	99	78.317	ENSECAG00000001700	GTPBP4	93	81.818	Equus_caballus
ENSCSAVG00000009793	-	99	77.994	ENSEEUG00000009889	GTPBP4	91	72.776	Erinaceus_europaeus
ENSCSAVG00000009793	-	99	80.583	ENSELUG00000008578	gtpbp4	100	61.550	Esox_lucius
ENSCSAVG00000009793	-	99	78.317	ENSFCAG00000026213	GTPBP4	100	62.883	Felis_catus
ENSCSAVG00000009793	-	98	79.739	ENSFALG00000006971	GTPBP4	87	63.553	Ficedula_albicollis
ENSCSAVG00000009793	-	99	78.317	ENSFDAG00000000998	GTPBP4	100	62.826	Fukomys_damarensis
ENSCSAVG00000009793	-	99	79.288	ENSFHEG00000012922	gtpbp4	100	63.126	Fundulus_heteroclitus
ENSCSAVG00000009793	-	99	79.612	ENSGMOG00000016090	gtpbp4	100	62.997	Gadus_morhua
ENSCSAVG00000009793	-	99	79.870	ENSGALG00000006703	GTPBP4	100	63.303	Gallus_gallus
ENSCSAVG00000009793	-	99	78.964	ENSGAFG00000002075	gtpbp4	100	63.278	Gambusia_affinis
ENSCSAVG00000009793	-	99	78.964	ENSGACG00000017481	gtpbp4	100	63.706	Gasterosteus_aculeatus
ENSCSAVG00000009793	-	95	78.912	ENSGAGG00000018689	GTPBP4	100	61.157	Gopherus_agassizii
ENSCSAVG00000009793	-	99	78.641	ENSGGOG00000013372	GTPBP4	100	63.053	Gorilla_gorilla
ENSCSAVG00000009793	-	99	79.612	ENSHBUG00000000192	gtpbp4	100	63.706	Haplochromis_burtoni
ENSCSAVG00000009793	-	99	78.317	ENSHGLG00000013071	GTPBP4	100	62.826	Heterocephalus_glaber_female
ENSCSAVG00000009793	-	99	74.839	ENSHGLG00100002964	-	100	58.282	Heterocephalus_glaber_male
ENSCSAVG00000009793	-	99	78.317	ENSHGLG00100017850	GTPBP4	100	62.826	Heterocephalus_glaber_male
ENSCSAVG00000009793	-	99	80.259	ENSHCOG00000011543	gtpbp4	100	64.625	Hippocampus_comes
ENSCSAVG00000009793	-	99	79.612	ENSIPUG00000014417	GTPBP4	100	64.012	Ictalurus_punctatus
ENSCSAVG00000009793	-	99	77.670	ENSSTOG00000010042	-	100	62.673	Ictidomys_tridecemlineatus
ENSCSAVG00000009793	-	99	68.932	ENSSTOG00000023023	-	100	57.165	Ictidomys_tridecemlineatus
ENSCSAVG00000009793	-	99	77.670	ENSJJAG00000010021	Gtpbp4	100	61.985	Jaculus_jaculus
ENSCSAVG00000009793	-	100	79.421	ENSKMAG00000021705	gtpbp4	100	63.093	Kryptolebias_marmoratus
ENSCSAVG00000009793	-	99	79.935	ENSLBEG00000021419	gtpbp4	100	61.589	Labrus_bergylta
ENSCSAVG00000009793	-	99	77.994	ENSLACG00000001449	GTPBP4	100	63.594	Latimeria_chalumnae
ENSCSAVG00000009793	-	99	80.259	ENSLOCG00000012279	gtpbp4	100	63.444	Lepisosteus_oculatus
ENSCSAVG00000009793	-	99	78.317	ENSLAFG00000018578	GTPBP4	100	62.730	Loxodonta_africana
ENSCSAVG00000009793	-	99	78.317	ENSMFAG00000046251	GTPBP4	100	62.443	Macaca_fascicularis
ENSCSAVG00000009793	-	99	73.139	ENSMMUG00000010813	GTPBP4	100	59.847	Macaca_mulatta
ENSCSAVG00000009793	-	99	78.317	ENSMNEG00000044366	GTPBP4	100	62.595	Macaca_nemestrina
ENSCSAVG00000009793	-	99	78.317	ENSMLEG00000039605	GTPBP4	100	62.443	Mandrillus_leucophaeus
ENSCSAVG00000009793	-	99	78.964	ENSMAMG00000013763	gtpbp4	92	63.581	Mastacembelus_armatus
ENSCSAVG00000009793	-	99	79.612	ENSMZEG00005006621	gtpbp4	100	63.553	Maylandia_zebra
ENSCSAVG00000009793	-	50	74.839	ENSMGAG00000016591	-	99	69.945	Meleagris_gallopavo
ENSCSAVG00000009793	-	99	78.641	ENSMAUG00000000571	Gtpbp4	100	63.748	Mesocricetus_auratus
ENSCSAVG00000009793	-	99	77.994	ENSMICG00000013332	GTPBP4	100	62.805	Microcebus_murinus
ENSCSAVG00000009793	-	99	78.317	ENSMOCG00000002209	Gtpbp4	100	63.594	Microtus_ochrogaster
ENSCSAVG00000009793	-	98	79.605	ENSMMOG00000011257	gtpbp4	100	62.021	Mola_mola
ENSCSAVG00000009793	-	99	77.994	ENSMODG00000005978	GTPBP4	100	62.117	Monodelphis_domestica
ENSCSAVG00000009793	-	99	79.153	ENSMALG00000012488	gtpbp4	100	64.165	Monopterus_albus
ENSCSAVG00000009793	-	99	77.994	MGP_CAROLIEiJ_G0018215	Gtpbp4	99	62.654	Mus_caroli
ENSCSAVG00000009793	-	99	78.317	ENSMUSG00000021149	Gtpbp4	95	79.245	Mus_musculus
ENSCSAVG00000009793	-	99	78.641	MGP_PahariEiJ_G0019265	Gtpbp4	100	63.287	Mus_pahari
ENSCSAVG00000009793	-	99	78.317	MGP_SPRETEiJ_G0019073	Gtpbp4	99	63.369	Mus_spretus
ENSCSAVG00000009793	-	84	77.863	ENSMPUG00000016221	GTPBP4	100	61.322	Mustela_putorius_furo
ENSCSAVG00000009793	-	99	78.641	ENSMLUG00000028192	GTPBP4	100	63.190	Myotis_lucifugus
ENSCSAVG00000009793	-	99	78.317	ENSNGAG00000015364	Gtpbp4	100	63.262	Nannospalax_galili
ENSCSAVG00000009793	-	91	76.000	ENSNBRG00000019965	gtpbp4	86	75.556	Neolamprologus_brichardi
ENSCSAVG00000009793	-	99	78.641	ENSNLEG00000013495	GTPBP4	100	62.748	Nomascus_leucogenys
ENSCSAVG00000009793	-	94	65.870	ENSMEUG00000016215	-	67	58.760	Notamacropus_eugenii
ENSCSAVG00000009793	-	99	77.670	ENSOPRG00000008671	GTPBP4	79	73.585	Ochotona_princeps
ENSCSAVG00000009793	-	99	78.317	ENSODEG00000000962	-	100	63.134	Octodon_degus
ENSCSAVG00000009793	-	99	76.375	ENSODEG00000019152	-	100	61.598	Octodon_degus
ENSCSAVG00000009793	-	99	79.935	ENSONIG00000017707	gtpbp4	100	64.012	Oreochromis_niloticus
ENSCSAVG00000009793	-	98	76.393	ENSOANG00000006095	-	99	61.196	Ornithorhynchus_anatinus
ENSCSAVG00000009793	-	99	67.197	ENSOCUG00000014716	-	99	64.973	Oryctolagus_cuniculus
ENSCSAVG00000009793	-	99	77.994	ENSOCUG00000016120	-	100	62.043	Oryctolagus_cuniculus
ENSCSAVG00000009793	-	99	79.288	ENSORLG00000006151	gtpbp4	100	63.374	Oryzias_latipes
ENSCSAVG00000009793	-	99	79.288	ENSORLG00020020899	gtpbp4	100	63.374	Oryzias_latipes_hni
ENSCSAVG00000009793	-	99	79.288	ENSORLG00015020562	gtpbp4	100	63.374	Oryzias_latipes_hsok
ENSCSAVG00000009793	-	99	78.964	ENSOMEG00000019684	gtpbp4	100	63.110	Oryzias_melastigma
ENSCSAVG00000009793	-	99	78.317	ENSOGAG00000011941	GTPBP4	100	62.805	Otolemur_garnettii
ENSCSAVG00000009793	-	99	78.317	ENSOARG00000015047	GTPBP4	100	62.080	Ovis_aries
ENSCSAVG00000009793	-	99	78.317	ENSPPAG00000042066	GTPBP4	100	62.901	Pan_paniscus
ENSCSAVG00000009793	-	99	78.317	ENSPPRG00000009895	GTPBP4	100	62.673	Panthera_pardus
ENSCSAVG00000009793	-	99	77.994	ENSPTIG00000008569	GTPBP4	100	62.730	Panthera_tigris_altaica
ENSCSAVG00000009793	-	99	78.317	ENSPTRG00000002236	GTPBP4	86	71.302	Pan_troglodytes
ENSCSAVG00000009793	-	99	77.994	ENSPANG00000023543	GTPBP4	100	62.443	Papio_anubis
ENSCSAVG00000009793	-	99	80.906	ENSPKIG00000012301	gtpbp4	100	64.438	Paramormyrops_kingsleyae
ENSCSAVG00000009793	-	99	79.288	ENSPSIG00000005442	GTPBP4	93	75.350	Pelodiscus_sinensis
ENSCSAVG00000009793	-	99	77.044	ENSPMGG00000001462	gtpbp4	100	60.305	Periophthalmus_magnuspinnatus
ENSCSAVG00000009793	-	99	63.192	ENSPEMG00000012279	-	100	48.769	Peromyscus_maniculatus_bairdii
ENSCSAVG00000009793	-	99	78.317	ENSPEMG00000015091	-	100	63.287	Peromyscus_maniculatus_bairdii
ENSCSAVG00000009793	-	99	78.964	ENSPMAG00000000905	gtpbp4	100	63.110	Petromyzon_marinus
ENSCSAVG00000009793	-	99	78.317	ENSPCIG00000026082	GTPBP4	100	62.423	Phascolarctos_cinereus
ENSCSAVG00000009793	-	99	78.641	ENSPFOG00000000026	gtpbp4	100	63.429	Poecilia_formosa
ENSCSAVG00000009793	-	99	78.641	ENSPLAG00000002898	gtpbp4	97	64.309	Poecilia_latipinna
ENSCSAVG00000009793	-	99	78.641	ENSPMEG00000016422	gtpbp4	100	63.278	Poecilia_mexicana
ENSCSAVG00000009793	-	98	79.276	ENSPREG00000019870	gtpbp4	100	61.912	Poecilia_reticulata
ENSCSAVG00000009793	-	99	78.317	ENSPPYG00000002037	GTPBP4	100	62.748	Pongo_abelii
ENSCSAVG00000009793	-	99	70.874	ENSPCOG00000014382	-	100	58.850	Propithecus_coquereli
ENSCSAVG00000009793	-	99	78.176	ENSPCOG00000014602	-	99	59.055	Propithecus_coquereli
ENSCSAVG00000009793	-	94	77.474	ENSPVAG00000005882	GTPBP4	86	74.684	Pteropus_vampyrus
ENSCSAVG00000009793	-	98	69.079	ENSPNYG00000024251	gtpbp4	100	56.355	Pundamilia_nyererei
ENSCSAVG00000009793	-	99	79.935	ENSPNAG00000019977	gtpbp4	100	63.859	Pygocentrus_nattereri
ENSCSAVG00000009793	-	99	77.346	ENSRNOG00000016217	Gtpbp4	100	62.826	Rattus_norvegicus
ENSCSAVG00000009793	-	99	78.317	ENSRBIG00000028875	GTPBP4	100	62.290	Rhinopithecus_bieti
ENSCSAVG00000009793	-	99	78.317	ENSRROG00000030798	GTPBP4	100	62.290	Rhinopithecus_roxellana
ENSCSAVG00000009793	-	98	57.566	YPL093W	-	99	44.494	Saccharomyces_cerevisiae
ENSCSAVG00000009793	-	99	77.994	ENSSBOG00000028421	GTPBP4	100	63.231	Saimiri_boliviensis_boliviensis
ENSCSAVG00000009793	-	99	77.994	ENSSHAG00000014713	GTPBP4	94	62.267	Sarcophilus_harrisii
ENSCSAVG00000009793	-	99	79.288	ENSSFOG00015003167	gtpbp4	100	63.247	Scleropages_formosus
ENSCSAVG00000009793	-	99	79.935	ENSSMAG00000005863	gtpbp4	100	63.526	Scophthalmus_maximus
ENSCSAVG00000009793	-	99	79.288	ENSSDUG00000006534	gtpbp4	100	64.012	Seriola_dumerili
ENSCSAVG00000009793	-	99	79.288	ENSSLDG00000020688	gtpbp4	100	63.859	Seriola_lalandi_dorsalis
ENSCSAVG00000009793	-	65	81.188	ENSSARG00000003409	-	79	81.188	Sorex_araneus
ENSCSAVG00000009793	-	99	78.641	ENSSPUG00000002153	GTPBP4	100	62.212	Sphenodon_punctatus
ENSCSAVG00000009793	-	67	51.471	ENSSPAG00000014583	gtpbp4	100	51.914	Stegastes_partitus
ENSCSAVG00000009793	-	99	78.317	ENSSSCG00000028602	GTPBP4	100	62.100	Sus_scrofa
ENSCSAVG00000009793	-	97	79.470	ENSTGUG00000000820	GTPBP4	100	63.524	Taeniopygia_guttata
ENSCSAVG00000009793	-	99	79.288	ENSTRUG00000003900	gtpbp4	100	63.303	Takifugu_rubripes
ENSCSAVG00000009793	-	99	79.612	ENSTNIG00000007992	gtpbp4	100	63.706	Tetraodon_nigroviridis
ENSCSAVG00000009793	-	99	62.866	ENSTBEG00000003613	GTPBP4	100	51.982	Tupaia_belangeri
ENSCSAVG00000009793	-	99	77.994	ENSTTRG00000011163	GTPBP4	100	58.815	Tursiops_truncatus
ENSCSAVG00000009793	-	99	78.641	ENSUAMG00000013191	GTPBP4	100	63.037	Ursus_americanus
ENSCSAVG00000009793	-	84	78.244	ENSUMAG00000016138	GTPBP4	100	61.148	Ursus_maritimus
ENSCSAVG00000009793	-	99	77.994	ENSVVUG00000008608	GTPBP4	98	62.557	Vulpes_vulpes
ENSCSAVG00000009793	-	100	57.450	ENSXETG00000018097	gtpbp4	100	57.362	Xenopus_tropicalis
ENSCSAVG00000009793	-	99	67.857	ENSXCOG00000019953	gtpbp4	98	57.686	Xiphophorus_couchianus
ENSCSAVG00000009793	-	99	78.641	ENSXMAG00000006719	gtpbp4	100	62.861	Xiphophorus_maculatus