EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000009819 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 7946 bases
Position: chrreftig_1:2114111-2122056
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000016701	zf-C2H2	PF00096.26	1.6e-27	1	5
ENSCSAVP00000016701	zf-C2H2	PF00096.26	1.6e-27	2	5
ENSCSAVP00000016701	zf-C2H2	PF00096.26	1.6e-27	3	5
ENSCSAVP00000016701	zf-C2H2	PF00096.26	1.6e-27	4	5
ENSCSAVP00000016701	zf-C2H2	PF00096.26	1.6e-27	5	5
ENSCSAVP00000016701	zf-met	PF12874.7	2.4e-10	1	2
ENSCSAVP00000016701	zf-met	PF12874.7	2.4e-10	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000016883	-	840	-	ENSCSAVP00000016701	193 (aa)	-	H2ZGI5

Gene Model

Click here to download ENSCSAVG00000009819's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000009819's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000009819	-	100	42.353	ENSCSAVG00000000690	-	99	42.353
ENSCSAVG00000009819	-	96	39.048	ENSCSAVG00000002179	-	99	39.048
ENSCSAVG00000009819	-	96	42.353	ENSCSAVG00000001989	-	100	39.286
ENSCSAVG00000009819	-	98	43.750	ENSCSAVG00000004499	-	99	43.750
ENSCSAVG00000009819	-	73	32.353	ENSCSAVG00000006745	-	98	30.882
ENSCSAVG00000009819	-	77	35.165	ENSCSAVG00000001808	-	99	35.165
ENSCSAVG00000009819	-	88	39.130	ENSCSAVG00000000293	-	100	42.308
ENSCSAVG00000009819	-	67	39.726	ENSCSAVG00000006028	-	50	39.726
ENSCSAVG00000009819	-	99	38.060	ENSCSAVG00000004703	-	99	46.774
ENSCSAVG00000009819	-	97	41.935	ENSCSAVG00000009574	-	99	41.935
ENSCSAVG00000009819	-	75	35.338	ENSCSAVG00000005896	-	69	35.338
ENSCSAVG00000009819	-	72	40.164	ENSCSAVG00000004762	-	99	40.164
ENSCSAVG00000009819	-	96	41.176	ENSCSAVG00000000655	-	99	41.176
ENSCSAVG00000009819	-	96	47.059	ENSCSAVG00000000673	-	100	47.059
ENSCSAVG00000009819	-	69	38.679	ENSCSAVG00000011749	-	79	38.679
ENSCSAVG00000009819	-	75	42.667	ENSCSAVG00000009217	-	81	42.667
ENSCSAVG00000009819	-	73	37.975	ENSCSAVG00000005904	-	100	37.975
ENSCSAVG00000009819	-	96	46.154	ENSCSAVG00000008862	-	100	46.154
ENSCSAVG00000009819	-	78	37.500	ENSCSAVG00000009583	-	99	37.500
ENSCSAVG00000009819	-	97	39.759	ENSCSAVG00000006608	-	99	45.312
ENSCSAVG00000009819	-	83	37.778	ENSCSAVG00000007589	-	99	37.778
ENSCSAVG00000009819	-	76	38.776	ENSCSAVG00000009739	-	60	38.776
ENSCSAVG00000009819	-	89	41.667	ENSCSAVG00000006650	-	99	41.667
ENSCSAVG00000009819	-	77	40.777	ENSCSAVG00000004678	-	99	40.323
ENSCSAVG00000009819	-	72	42.718	ENSCSAVG00000001830	-	99	42.718
ENSCSAVG00000009819	-	99	40.323	ENSCSAVG00000001834	-	99	40.323
ENSCSAVG00000009819	-	56	40.230	ENSCSAVG00000011146	-	66	40.230
ENSCSAVG00000009819	-	81	41.441	ENSCSAVG00000010156	-	99	41.441
ENSCSAVG00000009819	-	73	36.634	ENSCSAVG00000009953	-	96	36.559
ENSCSAVG00000009819	-	96	39.706	ENSCSAVG00000006141	-	100	39.259
ENSCSAVG00000009819	-	72	43.243	ENSCSAVG00000004543	-	99	37.838
ENSCSAVG00000009819	-	73	41.176	ENSCSAVG00000000649	-	99	41.176
ENSCSAVG00000009819	-	96	47.059	ENSCSAVG00000000642	-	100	47.059
ENSCSAVG00000009819	-	76	41.667	ENSCSAVG00000010960	-	99	41.667
ENSCSAVG00000009819	-	72	41.860	ENSCSAVG00000007918	-	97	41.860
ENSCSAVG00000009819	-	70	38.750	ENSCSAVG00000001949	-	95	38.750
ENSCSAVG00000009819	-	69	42.308	ENSCSAVG00000003895	-	99	42.308
ENSCSAVG00000009819	-	72	38.710	ENSCSAVG00000000520	-	100	38.710
ENSCSAVG00000009819	-	76	33.577	ENSCSAVG00000006729	-	69	33.577

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000009819	-	75	61.111	ENSG00000185669	SNAI3	59	54.335	Homo_sapiens
ENSCSAVG00000009819	-	81	57.962	ENSG00000019549	SNAI2	59	57.962	Homo_sapiens
ENSCSAVG00000009819	-	81	57.962	ENSAMEG00000009606	SNAI2	50	65.672	Ailuropoda_melanoleuca
ENSCSAVG00000009819	-	81	57.962	ENSANAG00000021163	SNAI2	59	57.962	Aotus_nancymaae
ENSCSAVG00000009819	-	81	58.599	ENSBTAG00000013227	SNAI2	50	66.418	Bos_taurus
ENSCSAVG00000009819	-	81	57.962	ENSCJAG00000013499	SNAI2	59	57.962	Callithrix_jacchus
ENSCSAVG00000009819	-	77	59.732	ENSCAFG00000029458	SNAI3	50	59.732	Canis_familiaris
ENSCSAVG00000009819	-	81	57.962	ENSCAFG00000006638	SNAI2	50	65.672	Canis_familiaris
ENSCSAVG00000009819	-	81	57.962	ENSCAFG00020015384	SNAI2	50	65.672	Canis_lupus_dingo
ENSCSAVG00000009819	-	81	58.599	ENSCHIG00000024410	SNAI2	50	66.418	Capra_hircus
ENSCSAVG00000009819	-	81	57.962	ENSTSYG00000030892	SNAI2	50	65.672	Carlito_syrichta
ENSCSAVG00000009819	-	81	57.055	ENSTSYG00000025594	SNAI3	57	55.882	Carlito_syrichta
ENSCSAVG00000009819	-	81	57.325	ENSCAPG00000013078	SNAI2	70	57.325	Cavia_aperea
ENSCSAVG00000009819	-	81	57.962	ENSCCAG00000024100	SNAI2	59	57.962	Cebus_capucinus
ENSCSAVG00000009819	-	87	55.952	ENSCATG00000031714	SNAI3	56	55.952	Cercocebus_atys
ENSCSAVG00000009819	-	81	57.962	ENSCATG00000028656	SNAI2	59	57.962	Cercocebus_atys
ENSCSAVG00000009819	-	81	57.962	ENSCLAG00000011797	SNAI2	50	65.672	Chinchilla_lanigera
ENSCSAVG00000009819	-	91	53.371	ENSCSAG00000003047	SNAI3	61	53.371	Chlorocebus_sabaeus
ENSCSAVG00000009819	-	81	57.962	ENSCSAG00000014787	SNAI2	59	57.962	Chlorocebus_sabaeus
ENSCSAVG00000009819	-	81	57.962	ENSCPBG00000020255	SNAI2	50	65.672	Chrysemys_picta_bellii
ENSCSAVG00000009819	-	91	53.371	ENSCANG00000031124	SNAI3	55	53.371	Colobus_angolensis_palliatus
ENSCSAVG00000009819	-	81	57.962	ENSCANG00000029656	SNAI2	59	57.962	Colobus_angolensis_palliatus
ENSCSAVG00000009819	-	69	65.672	ENSCGRG00001013674	Snai2	50	65.672	Cricetulus_griseus_chok1gshd
ENSCSAVG00000009819	-	69	65.672	ENSCGRG00000012119	Snai2	50	65.672	Cricetulus_griseus_crigri
ENSCSAVG00000009819	-	81	57.962	ENSDORG00000029620	Snai2	60	57.962	Dipodomys_ordii
ENSCSAVG00000009819	-	56	71.560	ENSETEG00000016371	-	79	71.560	Echinops_telfairi
ENSCSAVG00000009819	-	53	76.471	ENSEEUG00000000841	SNAI3	62	51.685	Erinaceus_europaeus
ENSCSAVG00000009819	-	53	73.529	ENSFCAG00000043885	SNAI3	59	73.529	Felis_catus
ENSCSAVG00000009819	-	69	62.687	ENSFALG00000012974	-	66	58.278	Ficedula_albicollis
ENSCSAVG00000009819	-	81	57.962	ENSFDAG00000016958	SNAI2	50	65.672	Fukomys_damarensis
ENSCSAVG00000009819	-	81	57.962	ENSGAGG00000000426	SNAI2	50	65.672	Gopherus_agassizii
ENSCSAVG00000009819	-	85	57.229	ENSGAGG00000023571	SNAI3	59	57.229	Gopherus_agassizii
ENSCSAVG00000009819	-	81	57.962	ENSGGOG00000000959	SNAI2	59	57.962	Gorilla_gorilla
ENSCSAVG00000009819	-	70	63.971	ENSGGOG00000012559	SNAI3	59	54.335	Gorilla_gorilla
ENSCSAVG00000009819	-	77	61.745	ENSHCOG00000019435	SNAI2	60	61.745	Hippocampus_comes
ENSCSAVG00000009819	-	68	64.885	ENSIPUG00000000131	snai2	50	64.885	Ictalurus_punctatus
ENSCSAVG00000009819	-	81	57.962	ENSSTOG00000028743	SNAI2	50	65.672	Ictidomys_tridecemlineatus
ENSCSAVG00000009819	-	69	64.179	ENSLOCG00000005992	SNAI2	50	64.179	Lepisosteus_oculatus
ENSCSAVG00000009819	-	69	65.672	ENSLOCG00000004887	SNAI3	82	65.672	Lepisosteus_oculatus
ENSCSAVG00000009819	-	81	58.599	ENSLAFG00000009299	SNAI2	59	58.599	Loxodonta_africana
ENSCSAVG00000009819	-	81	57.962	ENSMFAG00000046061	SNAI2	59	57.962	Macaca_fascicularis
ENSCSAVG00000009819	-	87	55.357	ENSMFAG00000032064	SNAI3	56	55.357	Macaca_fascicularis
ENSCSAVG00000009819	-	87	55.357	ENSMMUG00000008716	SNAI3	56	55.357	Macaca_mulatta
ENSCSAVG00000009819	-	81	57.962	ENSMMUG00000016195	SNAI2	59	57.962	Macaca_mulatta
ENSCSAVG00000009819	-	81	57.962	ENSMNEG00000034216	SNAI2	59	57.962	Macaca_nemestrina
ENSCSAVG00000009819	-	87	55.357	ENSMNEG00000045515	SNAI3	56	55.357	Macaca_nemestrina
ENSCSAVG00000009819	-	87	55.952	ENSMLEG00000033191	SNAI3	56	55.952	Mandrillus_leucophaeus
ENSCSAVG00000009819	-	81	57.962	ENSMLEG00000034407	SNAI2	59	57.962	Mandrillus_leucophaeus
ENSCSAVG00000009819	-	69	66.418	ENSMAUG00000008119	Snai2	50	66.418	Mesocricetus_auratus
ENSCSAVG00000009819	-	87	56.287	ENSMOCG00000003536	Snai3	56	56.287	Microtus_ochrogaster
ENSCSAVG00000009819	-	81	57.962	ENSMOCG00000006622	Snai2	50	65.672	Microtus_ochrogaster
ENSCSAVG00000009819	-	69	65.672	ENSMODG00000010173	SNAI2	50	65.672	Monodelphis_domestica
ENSCSAVG00000009819	-	69	65.672	MGP_CAROLIEiJ_G0020483	Snai2	50	65.672	Mus_caroli
ENSCSAVG00000009819	-	69	65.672	ENSMUSG00000022676	Snai2	50	65.672	Mus_musculus
ENSCSAVG00000009819	-	69	65.672	MGP_PahariEiJ_G0016188	Snai2	50	65.672	Mus_pahari
ENSCSAVG00000009819	-	69	65.672	MGP_SPRETEiJ_G0021379	Snai2	50	65.672	Mus_spretus
ENSCSAVG00000009819	-	81	57.962	ENSMPUG00000010793	SNAI2	50	65.672	Mustela_putorius_furo
ENSCSAVG00000009819	-	81	58.333	ENSMPUG00000008104	SNAI3	68	50.000	Mustela_putorius_furo
ENSCSAVG00000009819	-	81	57.962	ENSMLUG00000001086	SNAI2	50	65.672	Myotis_lucifugus
ENSCSAVG00000009819	-	81	57.962	ENSNLEG00000013421	SNAI2	59	57.962	Nomascus_leucogenys
ENSCSAVG00000009819	-	87	55.090	ENSNLEG00000000595	SNAI3	59	54.335	Nomascus_leucogenys
ENSCSAVG00000009819	-	69	65.672	ENSMEUG00000009510	SNAI2	51	65.672	Notamacropus_eugenii
ENSCSAVG00000009819	-	69	65.672	ENSOANG00000007267	SNAI2	50	65.672	Ornithorhynchus_anatinus
ENSCSAVG00000009819	-	81	58.599	ENSOARG00000013030	SNAI2	50	66.418	Ovis_aries
ENSCSAVG00000009819	-	81	57.962	ENSPPAG00000015662	SNAI2	59	57.962	Pan_paniscus
ENSCSAVG00000009819	-	70	63.971	ENSPPAG00000043301	SNAI3	59	54.335	Pan_paniscus
ENSCSAVG00000009819	-	53	73.529	ENSPPRG00000008511	SNAI3	59	73.529	Panthera_pardus
ENSCSAVG00000009819	-	81	57.962	ENSPPRG00000012562	-	50	65.672	Panthera_pardus
ENSCSAVG00000009819	-	81	57.962	ENSPTRG00000020235	SNAI2	59	57.962	Pan_troglodytes
ENSCSAVG00000009819	-	81	57.962	ENSPANG00000017540	SNAI2	59	57.962	Papio_anubis
ENSCSAVG00000009819	-	87	55.952	ENSPANG00000000509	SNAI3	56	55.952	Papio_anubis
ENSCSAVG00000009819	-	79	57.595	ENSPKIG00000002254	SNAI2	76	52.174	Paramormyrops_kingsleyae
ENSCSAVG00000009819	-	81	57.962	ENSPSIG00000016395	SNAI2	50	65.672	Pelodiscus_sinensis
ENSCSAVG00000009819	-	69	66.418	ENSPSIG00000004262	SNAI3	53	66.418	Pelodiscus_sinensis
ENSCSAVG00000009819	-	69	63.433	ENSPMGG00000013179	SNAI2	53	63.433	Periophthalmus_magnuspinnatus
ENSCSAVG00000009819	-	69	65.672	ENSPEMG00000011739	Snai2	50	65.672	Peromyscus_maniculatus_bairdii
ENSCSAVG00000009819	-	69	65.672	ENSPCIG00000025156	SNAI2	50	65.672	Phascolarctos_cinereus
ENSCSAVG00000009819	-	75	61.111	ENSPPYG00000007643	SNAI3	59	54.335	Pongo_abelii
ENSCSAVG00000009819	-	81	57.962	ENSPPYG00000018578	SNAI2	59	57.962	Pongo_abelii
ENSCSAVG00000009819	-	81	57.962	ENSPCOG00000015656	SNAI2	50	65.672	Propithecus_coquereli
ENSCSAVG00000009819	-	81	57.962	ENSPVAG00000009457	SNAI2	50	65.672	Pteropus_vampyrus
ENSCSAVG00000009819	-	89	51.934	ENSRNOG00000013586	Snai3	63	51.934	Rattus_norvegicus
ENSCSAVG00000009819	-	91	53.371	ENSRBIG00000025770	SNAI3	61	53.371	Rhinopithecus_bieti
ENSCSAVG00000009819	-	81	57.962	ENSRBIG00000041133	SNAI2	59	57.962	Rhinopithecus_bieti
ENSCSAVG00000009819	-	81	57.962	ENSRROG00000032273	SNAI2	59	57.962	Rhinopithecus_roxellana
ENSCSAVG00000009819	-	81	57.962	ENSSBOG00000035774	SNAI2	59	57.962	Saimiri_boliviensis_boliviensis
ENSCSAVG00000009819	-	69	65.672	ENSSHAG00000004205	SNAI2	50	65.672	Sarcophilus_harrisii
ENSCSAVG00000009819	-	69	64.179	ENSSFOG00015018025	SNAI2	50	64.179	Scleropages_formosus
ENSCSAVG00000009819	-	81	57.962	ENSSPUG00000005427	-	50	65.672	Sphenodon_punctatus
ENSCSAVG00000009819	-	81	58.599	ENSSSCG00000039568	SNAI2	59	58.599	Sus_scrofa
ENSCSAVG00000009819	-	77	58.784	ENSTTRG00000006262	SNAI3	59	53.254	Tursiops_truncatus
ENSCSAVG00000009819	-	81	57.962	ENSUAMG00000014942	SNAI2	58	65.672	Ursus_americanus
ENSCSAVG00000009819	-	84	56.442	ENSUAMG00000020030	SNAI3	61	53.552	Ursus_americanus
ENSCSAVG00000009819	-	81	57.962	ENSUMAG00000006525	SNAI2	51	65.672	Ursus_maritimus
ENSCSAVG00000009819	-	81	57.962	ENSVVUG00000017625	SNAI2	50	65.672	Vulpes_vulpes
ENSCSAVG00000009819	-	69	65.672	ENSXETG00000024006	snai2	50	65.672	Xenopus_tropicalis