EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCSAVG00000009923 (Gene tree)
Gene ID
-
Gene Symbol
-
Alias
-
Full Name
-
Gene Type
protein_coding
Species
Ciona_savignyi
Status
putative
Strand
Minus strand
Length
8883 bases
Position
chrreftig_54:2256838-2265720
Accession
-
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSAVP00000016875DND1_DSRMPF14709.71.4e-2011
ENSCSAVP00000016876DND1_DSRMPF14709.71.5e-2011
ENSCSAVP00000016877DND1_DSRMPF14709.71.6e-2011
ENSCSAVP00000016875RRM_1PF00076.227.2e-3713
ENSCSAVP00000016875RRM_1PF00076.227.2e-3723
ENSCSAVP00000016875RRM_1PF00076.227.2e-3733
ENSCSAVP00000016876RRM_1PF00076.228.1e-3713
ENSCSAVP00000016876RRM_1PF00076.228.1e-3723
ENSCSAVP00000016876RRM_1PF00076.228.1e-3733
ENSCSAVP00000016877RRM_1PF00076.229.1e-3713
ENSCSAVP00000016877RRM_1PF00076.229.1e-3723
ENSCSAVP00000016877RRM_1PF00076.229.1e-3733
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSAVT00000017059-1717-ENSCSAVP00000016877539 (aa)-H2ZH11
ENSCSAVT00000017058-1723-ENSCSAVP00000016876524 (aa)-H2ZH10
ENSCSAVT00000017057-1747-ENSCSAVP00000016875510 (aa)-H2ZH09
Gene Model
Click here to download ENSCSAVG00000009923's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000009923's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCSAVG00000009923-5750.847ENSCSAVG00000008860-6550.502
ENSCSAVG00000009923-9649.143ENSCSAVG00000000326-9350.097
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSAVG00000009923-9650.473ENSCING00000004101-9250.664Ciona_intestinalis
ENSCSAVG00000009923-9984.892ENSCING00000003864-8885.072Ciona_intestinalis
ENSCSAVG00000009923-9439.104ENSEBUG00000015949-9139.104Eptatretus_burgeri
ENSCSAVG00000009923-5145.926ENSEBUG00000016408-6345.926Eptatretus_burgeri
ENSCSAVG00000009923-5646.465ENSPMAG00000008818-9947.811Petromyzon_marinus

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