EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000009925 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 4165 bases
Position: chrreftig_1:2314839-2319003
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000016879	RNA_pol_Rpb1_5	PF04998.17	2.7e-87	1	1
ENSCSAVP00000016879	RNA_pol_Rpb1_4	PF05000.17	1.1e-29	1	1
ENSCSAVP00000016879	RNA_pol_Rpb1_2	PF00623.20	1.2e-72	1	1
ENSCSAVP00000016879	RNA_pol_Rpb1_3	PF04983.18	1.2e-39	1	1
ENSCSAVP00000016879	RNA_pol_Rpb1_1	PF04997.12	7.2e-81	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000017061	-	4008	-	ENSCSAVP00000016879	1336 (aa)	-	H2ZH13

Gene Model

Click here to download ENSCSAVG00000009925's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000009925's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000009925	-	72	50.000	ENSCSAVG00000007184	-	64	45.370
ENSCSAVG00000009925	-	91	37.029	ENSCSAVG00000008334	-	79	37.115

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000009925	-	99	69.524	ENSG00000148606	POLR3A	96	76.433	Homo_sapiens
ENSCSAVG00000009925	-	61	70.118	ENSAPOG00000022727	polr3a	97	70.118	Acanthochromis_polyacanthus
ENSCSAVG00000009925	-	99	69.662	ENSAMEG00000017801	POLR3A	99	69.662	Ailuropoda_melanoleuca
ENSCSAVG00000009925	-	93	68.745	ENSACIG00000024504	polr3a	97	68.745	Amphilophus_citrinellus
ENSCSAVG00000009925	-	99	67.003	ENSAOCG00000003949	-	99	67.003	Amphiprion_ocellaris
ENSCSAVG00000009925	-	99	69.092	ENSAOCG00000002071	polr3a	99	69.092	Amphiprion_ocellaris
ENSCSAVG00000009925	-	99	69.092	ENSAPEG00000013351	polr3a	99	69.092	Amphiprion_percula
ENSCSAVG00000009925	-	99	68.948	ENSAPEG00000001966	-	99	68.948	Amphiprion_percula
ENSCSAVG00000009925	-	99	68.876	ENSATEG00000023277	polr3a	99	68.876	Anabas_testudineus
ENSCSAVG00000009925	-	99	69.701	ENSAPLG00000015878	POLR3A	99	69.701	Anas_platyrhynchos
ENSCSAVG00000009925	-	93	68.345	ENSACAG00000007985	POLR3A	99	68.345	Anolis_carolinensis
ENSCSAVG00000009925	-	99	67.002	ENSANAG00000028922	POLR3A	95	76.433	Aotus_nancymaae
ENSCSAVG00000009925	-	99	69.042	ENSACLG00000005914	polr3a	99	69.042	Astatotilapia_calliptera
ENSCSAVG00000009925	-	99	65.659	ENSAMXG00000018852	polr3a	99	65.659	Astyanax_mexicanus
ENSCSAVG00000009925	-	99	69.452	ENSBTAG00000013259	POLR3A	99	69.452	Bos_taurus
ENSCSAVG00000009925	-	99	53.145	WBGene00004411	rpc-1	99	53.145	Caenorhabditis_elegans
ENSCSAVG00000009925	-	99	69.524	ENSCJAG00000001015	POLR3A	95	76.433	Callithrix_jacchus
ENSCSAVG00000009925	-	99	69.741	ENSCAFG00000015546	POLR3A	99	69.741	Canis_familiaris
ENSCSAVG00000009925	-	99	69.741	ENSCAFG00020014711	POLR3A	99	69.741	Canis_lupus_dingo
ENSCSAVG00000009925	-	99	69.597	ENSCHIG00000000352	POLR3A	99	69.597	Capra_hircus
ENSCSAVG00000009925	-	99	69.308	ENSTSYG00000006671	POLR3A	99	69.308	Carlito_syrichta
ENSCSAVG00000009925	-	99	68.900	ENSCAPG00000016031	POLR3A	99	68.900	Cavia_aperea
ENSCSAVG00000009925	-	99	69.020	ENSCPOG00000022387	POLR3A	99	69.020	Cavia_porcellus
ENSCSAVG00000009925	-	99	69.336	ENSCCAG00000032995	POLR3A	95	76.433	Cebus_capucinus
ENSCSAVG00000009925	-	99	69.452	ENSCATG00000035842	POLR3A	96	76.433	Cercocebus_atys
ENSCSAVG00000009925	-	99	69.092	ENSCLAG00000009629	POLR3A	99	69.092	Chinchilla_lanigera
ENSCSAVG00000009925	-	99	69.524	ENSCSAG00000009292	POLR3A	99	69.524	Chlorocebus_sabaeus
ENSCSAVG00000009925	-	85	56.962	ENSCHOG00000008368	POLR3A	100	56.962	Choloepus_hoffmanni
ENSCSAVG00000009925	-	99	69.597	ENSCPBG00000002079	POLR3A	99	69.597	Chrysemys_picta_bellii
ENSCSAVG00000009925	-	87	66.062	ENSCANG00000041071	POLR3A	96	76.433	Colobus_angolensis_palliatus
ENSCSAVG00000009925	-	78	73.011	ENSCGRG00001015599	-	94	73.011	Cricetulus_griseus_chok1gshd
ENSCSAVG00000009925	-	80	80.682	ENSCGRG00000001019	Polr3a	95	80.682	Cricetulus_griseus_crigri
ENSCSAVG00000009925	-	99	68.732	ENSCSEG00000016653	polr3a	99	68.732	Cynoglossus_semilaevis
ENSCSAVG00000009925	-	99	68.876	ENSCVAG00000023049	polr3a	99	68.876	Cyprinodon_variegatus
ENSCSAVG00000009925	-	99	68.516	ENSDARG00000102569	polr3a	99	68.516	Danio_rerio
ENSCSAVG00000009925	-	99	69.380	ENSDNOG00000010194	POLR3A	99	69.380	Dasypus_novemcinctus
ENSCSAVG00000009925	-	99	69.452	ENSDORG00000000184	Polr3a	99	69.452	Dipodomys_ordii
ENSCSAVG00000009925	-	98	55.434	FBgn0030687	CG17209	98	55.434	Drosophila_melanogaster
ENSCSAVG00000009925	-	86	66.337	ENSETEG00000007477	POLR3A	85	66.337	Echinops_telfairi
ENSCSAVG00000009925	-	59	68.852	ENSEBUG00000013761	polr3a	98	68.852	Eptatretus_burgeri
ENSCSAVG00000009925	-	99	69.524	ENSEASG00005023053	POLR3A	99	69.524	Equus_asinus_asinus
ENSCSAVG00000009925	-	96	69.523	ENSECAG00000019416	POLR3A	99	69.523	Equus_caballus
ENSCSAVG00000009925	-	96	66.021	ENSEEUG00000001774	POLR3A	99	66.021	Erinaceus_europaeus
ENSCSAVG00000009925	-	99	67.434	ENSELUG00000014016	polr3a	99	67.434	Esox_lucius
ENSCSAVG00000009925	-	99	69.741	ENSFCAG00000000843	POLR3A	99	69.741	Felis_catus
ENSCSAVG00000009925	-	99	69.690	ENSFALG00000006913	POLR3A	99	69.690	Ficedula_albicollis
ENSCSAVG00000009925	-	99	69.380	ENSFDAG00000007813	POLR3A	99	69.380	Fukomys_damarensis
ENSCSAVG00000009925	-	99	62.824	ENSFHEG00000011922	polr3a	99	62.824	Fundulus_heteroclitus
ENSCSAVG00000009925	-	99	66.572	ENSGMOG00000000291	polr3a	99	66.572	Gadus_morhua
ENSCSAVG00000009925	-	99	69.813	ENSGALG00000004947	POLR3A	99	69.813	Gallus_gallus
ENSCSAVG00000009925	-	99	69.164	ENSGAFG00000005112	polr3a	99	69.164	Gambusia_affinis
ENSCSAVG00000009925	-	99	68.588	ENSGACG00000002304	polr3a	99	68.588	Gasterosteus_aculeatus
ENSCSAVG00000009925	-	95	69.085	ENSGAGG00000010386	POLR3A	98	69.085	Gopherus_agassizii
ENSCSAVG00000009925	-	99	68.547	ENSGGOG00000027729	POLR3A	96	76.433	Gorilla_gorilla
ENSCSAVG00000009925	-	99	69.020	ENSHBUG00000018098	polr3a	99	69.020	Haplochromis_burtoni
ENSCSAVG00000009925	-	99	69.092	ENSHGLG00000017899	POLR3A	99	69.092	Heterocephalus_glaber_female
ENSCSAVG00000009925	-	99	69.092	ENSHGLG00100008483	POLR3A	99	69.092	Heterocephalus_glaber_male
ENSCSAVG00000009925	-	99	68.732	ENSHCOG00000001075	polr3a	99	68.732	Hippocampus_comes
ENSCSAVG00000009925	-	99	69.380	ENSSTOG00000012983	POLR3A	99	69.380	Ictidomys_tridecemlineatus
ENSCSAVG00000009925	-	99	68.948	ENSKMAG00000015290	polr3a	99	68.948	Kryptolebias_marmoratus
ENSCSAVG00000009925	-	99	67.939	ENSLBEG00000017214	polr3a	99	67.939	Labrus_bergylta
ENSCSAVG00000009925	-	97	67.558	ENSLACG00000018557	POLR3A	99	67.558	Latimeria_chalumnae
ENSCSAVG00000009925	-	99	69.446	ENSLOCG00000004942	polr3a	99	69.446	Lepisosteus_oculatus
ENSCSAVG00000009925	-	99	69.137	ENSLAFG00000016719	POLR3A	99	69.137	Loxodonta_africana
ENSCSAVG00000009925	-	99	69.452	ENSMFAG00000032218	POLR3A	95	76.433	Macaca_fascicularis
ENSCSAVG00000009925	-	99	69.452	ENSMMUG00000005514	POLR3A	96	76.433	Macaca_mulatta
ENSCSAVG00000009925	-	99	66.210	ENSMNEG00000035163	POLR3A	99	69.867	Macaca_nemestrina
ENSCSAVG00000009925	-	99	65.755	ENSMLEG00000030014	POLR3A	96	76.433	Mandrillus_leucophaeus
ENSCSAVG00000009925	-	99	68.876	ENSMAMG00000017497	polr3a	99	68.876	Mastacembelus_armatus
ENSCSAVG00000009925	-	99	69.042	ENSMZEG00005000576	polr3a	99	69.042	Maylandia_zebra
ENSCSAVG00000009925	-	99	55.508	ENSMGAG00000005713	-	99	55.508	Meleagris_gallopavo
ENSCSAVG00000009925	-	99	67.649	ENSMAUG00000016247	Polr3a	99	67.649	Mesocricetus_auratus
ENSCSAVG00000009925	-	99	69.524	ENSMICG00000005937	POLR3A	99	72.561	Microcebus_murinus
ENSCSAVG00000009925	-	99	69.597	ENSMOCG00000012185	Polr3a	99	69.597	Microtus_ochrogaster
ENSCSAVG00000009925	-	99	68.372	ENSMMOG00000013822	polr3a	99	68.372	Mola_mola
ENSCSAVG00000009925	-	99	69.308	ENSMODG00000001036	POLR3A	99	69.380	Monodelphis_domestica
ENSCSAVG00000009925	-	99	68.372	ENSMALG00000001249	polr3a	99	68.372	Monopterus_albus
ENSCSAVG00000009925	-	99	69.524	MGP_CAROLIEiJ_G0019016	Polr3a	99	69.524	Mus_caroli
ENSCSAVG00000009925	-	99	69.597	ENSMUSG00000025280	Polr3a	99	69.597	Mus_musculus
ENSCSAVG00000009925	-	99	69.524	MGP_PahariEiJ_G0030029	Polr3a	99	69.524	Mus_pahari
ENSCSAVG00000009925	-	99	67.075	MGP_SPRETEiJ_G0019894	Polr3a	97	77.966	Mus_spretus
ENSCSAVG00000009925	-	99	69.071	ENSMPUG00000003790	POLR3A	99	69.071	Mustela_putorius_furo
ENSCSAVG00000009925	-	99	68.804	ENSMLUG00000011522	POLR3A	99	68.804	Myotis_lucifugus
ENSCSAVG00000009925	-	99	68.228	ENSNGAG00000015863	Polr3a	99	68.228	Nannospalax_galili
ENSCSAVG00000009925	-	99	68.903	ENSNBRG00000014262	polr3a	99	68.903	Neolamprologus_brichardi
ENSCSAVG00000009925	-	87	66.498	ENSNLEG00000010501	POLR3A	91	66.498	Nomascus_leucogenys
ENSCSAVG00000009925	-	99	59.723	ENSMEUG00000012446	POLR3A	99	59.796	Notamacropus_eugenii
ENSCSAVG00000009925	-	99	66.571	ENSOPRG00000001880	-	99	66.571	Ochotona_princeps
ENSCSAVG00000009925	-	99	68.948	ENSODEG00000015146	POLR3A	99	68.948	Octodon_degus
ENSCSAVG00000009925	-	99	69.020	ENSONIG00000016129	polr3a	99	69.020	Oreochromis_niloticus
ENSCSAVG00000009925	-	98	68.983	ENSOANG00000007013	POLR3A	99	69.129	Ornithorhynchus_anatinus
ENSCSAVG00000009925	-	99	69.452	ENSOCUG00000012450	POLR3A	99	69.452	Oryctolagus_cuniculus
ENSCSAVG00000009925	-	99	68.804	ENSORLG00000008958	polr3a	99	68.804	Oryzias_latipes
ENSCSAVG00000009925	-	99	67.291	ENSORLG00020007525	polr3a	98	69.048	Oryzias_latipes_hni
ENSCSAVG00000009925	-	99	68.876	ENSORLG00015006633	polr3a	99	68.876	Oryzias_latipes_hsok
ENSCSAVG00000009925	-	99	67.867	ENSOMEG00000012865	polr3a	99	67.867	Oryzias_melastigma
ENSCSAVG00000009925	-	99	69.597	ENSOGAG00000010995	POLR3A	99	69.597	Otolemur_garnettii
ENSCSAVG00000009925	-	99	69.496	ENSOARG00000009656	POLR3A	99	69.496	Ovis_aries
ENSCSAVG00000009925	-	99	69.741	ENSPPRG00000002128	POLR3A	99	69.741	Panthera_pardus
ENSCSAVG00000009925	-	99	69.741	ENSPTIG00000020916	POLR3A	99	69.741	Panthera_tigris_altaica
ENSCSAVG00000009925	-	99	69.597	ENSPTRG00000002664	POLR3A	96	76.433	Pan_troglodytes
ENSCSAVG00000009925	-	99	69.452	ENSPANG00000022508	POLR3A	96	76.433	Papio_anubis
ENSCSAVG00000009925	-	99	69.308	ENSPKIG00000008140	polr3a	99	69.673	Paramormyrops_kingsleyae
ENSCSAVG00000009925	-	98	69.495	ENSPSIG00000002092	POLR3A	99	69.495	Pelodiscus_sinensis
ENSCSAVG00000009925	-	99	69.597	ENSPEMG00000006768	Polr3a	99	69.597	Peromyscus_maniculatus_bairdii
ENSCSAVG00000009925	-	99	69.308	ENSPCIG00000015842	POLR3A	99	69.380	Phascolarctos_cinereus
ENSCSAVG00000009925	-	54	68.059	ENSPFOG00000006458	polr3a	99	68.059	Poecilia_formosa
ENSCSAVG00000009925	-	99	69.020	ENSPLAG00000000997	polr3a	99	69.020	Poecilia_latipinna
ENSCSAVG00000009925	-	99	69.020	ENSPMEG00000006821	polr3a	99	69.020	Poecilia_mexicana
ENSCSAVG00000009925	-	99	69.092	ENSPREG00000002385	polr3a	99	69.092	Poecilia_reticulata
ENSCSAVG00000009925	-	93	69.249	ENSPPYG00000002305	POLR3A	99	69.249	Pongo_abelii
ENSCSAVG00000009925	-	84	63.048	ENSPCAG00000005690	POLR3A	87	63.048	Procavia_capensis
ENSCSAVG00000009925	-	99	69.452	ENSPCOG00000028311	POLR3A	99	69.452	Propithecus_coquereli
ENSCSAVG00000009925	-	99	68.372	ENSPVAG00000015553	POLR3A	99	68.372	Pteropus_vampyrus
ENSCSAVG00000009925	-	99	69.042	ENSPNYG00000020987	polr3a	99	69.042	Pundamilia_nyererei
ENSCSAVG00000009925	-	99	67.747	ENSPNAG00000006629	polr3a	99	67.747	Pygocentrus_nattereri
ENSCSAVG00000009925	-	99	69.669	ENSRNOG00000010008	Polr3a	99	69.669	Rattus_norvegicus
ENSCSAVG00000009925	-	99	65.922	ENSRBIG00000034967	POLR3A	96	76.433	Rhinopithecus_bieti
ENSCSAVG00000009925	-	99	69.524	ENSRROG00000025527	POLR3A	96	76.433	Rhinopithecus_roxellana
ENSCSAVG00000009925	-	98	47.911	YOR116C	RPO31	98	47.911	Saccharomyces_cerevisiae
ENSCSAVG00000009925	-	99	69.524	ENSSBOG00000022199	POLR3A	93	76.433	Saimiri_boliviensis_boliviensis
ENSCSAVG00000009925	-	99	69.308	ENSSHAG00000007588	POLR3A	94	69.380	Sarcophilus_harrisii
ENSCSAVG00000009925	-	99	69.042	ENSSFOG00015014357	polr3a	99	69.042	Scleropages_formosus
ENSCSAVG00000009925	-	99	68.372	ENSSMAG00000001780	polr3a	99	68.372	Scophthalmus_maximus
ENSCSAVG00000009925	-	99	68.732	ENSSDUG00000019840	polr3a	99	68.732	Seriola_dumerili
ENSCSAVG00000009925	-	99	68.804	ENSSLDG00000023908	polr3a	99	68.804	Seriola_lalandi_dorsalis
ENSCSAVG00000009925	-	70	78.056	ENSSARG00000009916	POLR3A	89	78.056	Sorex_araneus
ENSCSAVG00000009925	-	99	68.903	ENSSPUG00000013209	POLR3A	99	68.903	Sphenodon_punctatus
ENSCSAVG00000009925	-	99	68.948	ENSSPAG00000017712	polr3a	99	68.948	Stegastes_partitus
ENSCSAVG00000009925	-	93	76.667	ENSSSCG00000010327	POLR3A	99	76.667	Sus_scrofa
ENSCSAVG00000009925	-	99	69.597	ENSTGUG00000006423	-	99	69.597	Taeniopygia_guttata
ENSCSAVG00000009925	-	100	68.319	ENSTRUG00000013488	polr3a	100	68.319	Takifugu_rubripes
ENSCSAVG00000009925	-	100	68.485	ENSTNIG00000013151	polr3a	100	68.485	Tetraodon_nigroviridis
ENSCSAVG00000009925	-	70	86.170	ENSTBEG00000015288	POLR3A	74	86.170	Tupaia_belangeri
ENSCSAVG00000009925	-	96	70.418	ENSTTRG00000007817	POLR3A	99	70.418	Tursiops_truncatus
ENSCSAVG00000009925	-	99	67.723	ENSUAMG00000011283	POLR3A	99	67.723	Ursus_americanus
ENSCSAVG00000009925	-	99	69.741	ENSUMAG00000013913	POLR3A	99	69.741	Ursus_maritimus
ENSCSAVG00000009925	-	99	64.603	ENSVPAG00000003285	POLR3A	99	64.603	Vicugna_pacos
ENSCSAVG00000009925	-	99	69.741	ENSVVUG00000025523	POLR3A	99	69.741	Vulpes_vulpes
ENSCSAVG00000009925	-	86	68.865	ENSXETG00000018101	polr3a	100	68.865	Xenopus_tropicalis
ENSCSAVG00000009925	-	99	68.804	ENSXMAG00000015213	polr3a	99	68.804	Xiphophorus_maculatus