EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000010047 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 4098 bases
Position: chrreftig_27:1334960-1339057
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000017090	TruB_N	PF01509.18	3.5e-24	1	1
ENSCSAVP00000017089	TruB_N	PF01509.18	5.8e-23	1	1
ENSCSAVP00000017088	TruB_N	PF01509.18	1.7e-22	1	1
ENSCSAVP00000017087	TruB_N	PF01509.18	2.5e-22	1	1
ENSCSAVP00000017088	PUA	PF01472.20	3.3e-18	1	1
ENSCSAVP00000017090	PUA	PF01472.20	3.8e-18	1	1
ENSCSAVP00000017089	PUA	PF01472.20	4e-18	1	1
ENSCSAVP00000017086	PUA	PF01472.20	4.3e-18	1	1
ENSCSAVP00000017087	PUA	PF01472.20	8.8e-18	1	1
ENSCSAVP00000017090	DKCLD	PF08068.12	2.2e-30	1	1
ENSCSAVP00000017087	DKCLD	PF08068.12	2.5e-30	1	1
ENSCSAVP00000017088	DKCLD	PF08068.12	2.7e-30	1	1
ENSCSAVP00000017089	DKCLD	PF08068.12	2.8e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000017273	-	1366	-	ENSCSAVP00000017090	447 (aa)	-	H2ZHM4
ENSCSAVT00000017269	-	1650	-	ENSCSAVP00000017086	307 (aa)	-	H2ZHM0
ENSCSAVT00000017271	-	1693	-	ENSCSAVP00000017088	500 (aa)	-	H2ZHM2
ENSCSAVT00000017270	-	1622	-	ENSCSAVP00000017087	478 (aa)	-	H2ZHM1
ENSCSAVT00000017272	-	1607	-	ENSCSAVP00000017089	510 (aa)	-	H2ZHM3

Gene Model

Click here to download ENSCSAVG00000010047's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000010047's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000010047	-	96	74.596	ENSG00000130826	DKC1	99	83.010	Homo_sapiens
ENSCSAVG00000010047	-	94	76.777	ENSAPOG00000007799	dkc1	79	79.156	Acanthochromis_polyacanthus
ENSCSAVG00000010047	-	96	73.843	ENSAMEG00000002776	DKC1	90	70.460	Ailuropoda_melanoleuca
ENSCSAVG00000010047	-	89	79.545	ENSACIG00000022614	dkc1	81	80.563	Amphilophus_citrinellus
ENSCSAVG00000010047	-	94	76.777	ENSAOCG00000013159	dkc1	80	80.711	Amphiprion_ocellaris
ENSCSAVG00000010047	-	94	76.777	ENSAPEG00000002284	dkc1	91	72.062	Amphiprion_percula
ENSCSAVG00000010047	-	94	74.186	ENSATEG00000013682	dkc1	79	78.164	Anabas_testudineus
ENSCSAVG00000010047	-	96	73.770	ENSACAG00000015600	DKC1	68	78.372	Anolis_carolinensis
ENSCSAVG00000010047	-	96	74.769	ENSANAG00000022732	DKC1	82	76.190	Aotus_nancymaae
ENSCSAVG00000010047	-	89	79.198	ENSACLG00000015605	dkc1	81	79.648	Astatotilapia_calliptera
ENSCSAVG00000010047	-	91	78.133	ENSAMXG00000017108	dkc1	92	69.979	Astyanax_mexicanus
ENSCSAVG00000010047	-	97	73.963	ENSBTAG00000013045	DKC1	86	73.516	Bos_taurus
ENSCSAVG00000010047	-	93	63.133	WBGene00010478	K01G5.5	87	66.150	Caenorhabditis_elegans
ENSCSAVG00000010047	-	96	74.365	ENSCJAG00000004210	DKC1	81	75.714	Callithrix_jacchus
ENSCSAVG00000010047	-	97	73.318	ENSCAFG00000019620	-	81	74.463	Canis_familiaris
ENSCSAVG00000010047	-	97	65.446	ENSCAFG00000009311	-	78	69.173	Canis_familiaris
ENSCSAVG00000010047	-	97	65.446	ENSCAFG00020009379	-	80	65.647	Canis_lupus_dingo
ENSCSAVG00000010047	-	97	73.318	ENSCAFG00020008918	-	81	74.463	Canis_lupus_dingo
ENSCSAVG00000010047	-	97	74.194	ENSCHIG00000017392	DKC1	78	78.426	Capra_hircus
ENSCSAVG00000010047	-	96	72.562	ENSTSYG00000007681	DKC1	74	79.540	Carlito_syrichta
ENSCSAVG00000010047	-	89	76.179	ENSCAPG00000003342	DKC1	83	81.818	Cavia_aperea
ENSCSAVG00000010047	-	96	74.246	ENSCPOG00000008825	DKC1	82	75.714	Cavia_porcellus
ENSCSAVG00000010047	-	96	65.127	ENSCCAG00000027418	DKC1	80	66.190	Cebus_capucinus
ENSCSAVG00000010047	-	96	74.596	ENSCATG00000033602	DKC1	81	75.904	Cercocebus_atys
ENSCSAVG00000010047	-	96	74.074	ENSCLAG00000000720	DKC1	92	68.936	Chinchilla_lanigera
ENSCSAVG00000010047	-	96	74.246	ENSCSAG00000006706	DKC1	81	76.145	Chlorocebus_sabaeus
ENSCSAVG00000010047	-	88	78.987	ENSCPBG00000005858	DKC1	87	77.404	Chrysemys_picta_bellii
ENSCSAVG00000010047	-	88	94.911	ENSCING00000004599	-	93	81.705	Ciona_intestinalis
ENSCSAVG00000010047	-	96	74.246	ENSCANG00000027987	DKC1	81	76.145	Colobus_angolensis_palliatus
ENSCSAVG00000010047	-	84	60.317	ENSCGRG00001016789	-	79	60.705	Cricetulus_griseus_chok1gshd
ENSCSAVG00000010047	-	88	77.722	ENSCGRG00001014574	-	82	75.714	Cricetulus_griseus_chok1gshd
ENSCSAVG00000010047	-	84	60.317	ENSCGRG00000014809	-	77	60.705	Cricetulus_griseus_crigri
ENSCSAVG00000010047	-	88	77.722	ENSCGRG00000016075	-	82	75.714	Cricetulus_griseus_crigri
ENSCSAVG00000010047	-	91	77.094	ENSCSEG00000012633	dkc1	84	78.535	Cynoglossus_semilaevis
ENSCSAVG00000010047	-	88	79.188	ENSCVAG00000010155	dkc1	77	79.293	Cyprinodon_variegatus
ENSCSAVG00000010047	-	92	78.780	ENSDARG00000016484	dkc1	87	73.696	Danio_rerio
ENSCSAVG00000010047	-	97	73.333	ENSDNOG00000004218	DKC1	81	76.442	Dasypus_novemcinctus
ENSCSAVG00000010047	-	62	62.681	ENSDORG00000013566	-	90	62.681	Dipodomys_ordii
ENSCSAVG00000010047	-	97	67.436	FBgn0259937	Nop60B	91	64.871	Drosophila_melanogaster
ENSCSAVG00000010047	-	88	77.722	ENSETEG00000016095	DKC1	80	77.722	Echinops_telfairi
ENSCSAVG00000010047	-	69	71.362	ENSEBUG00000016062	dkc1	71	77.401	Eptatretus_burgeri
ENSCSAVG00000010047	-	75	73.512	ENSEBUG00000015962	dkc1	99	79.181	Eptatretus_burgeri
ENSCSAVG00000010047	-	88	77.722	ENSEASG00005007484	DKC1	79	75.604	Equus_asinus_asinus
ENSCSAVG00000010047	-	88	77.722	ENSECAG00000023524	DKC1	79	75.604	Equus_caballus
ENSCSAVG00000010047	-	94	74.171	ENSEEUG00000003323	DKC1	91	78.608	Erinaceus_europaeus
ENSCSAVG00000010047	-	94	77.619	ENSELUG00000014538	dkc1	80	81.266	Esox_lucius
ENSCSAVG00000010047	-	99	70.084	ENSFCAG00000006577	DKC1	92	70.108	Felis_catus
ENSCSAVG00000010047	-	96	74.483	ENSFALG00000011496	DKC1	80	75.592	Ficedula_albicollis
ENSCSAVG00000010047	-	96	73.550	ENSFDAG00000002516	DKC1	92	71.024	Fukomys_damarensis
ENSCSAVG00000010047	-	94	75.837	ENSFHEG00000004627	dkc1	78	80.256	Fundulus_heteroclitus
ENSCSAVG00000010047	-	88	78.316	ENSGMOG00000017277	dkc1	100	78.316	Gadus_morhua
ENSCSAVG00000010047	-	96	74.884	ENSGALG00000005054	DKC1	80	76.202	Gallus_gallus
ENSCSAVG00000010047	-	88	78.734	ENSGAFG00000011486	dkc1	67	79.795	Gambusia_affinis
ENSCSAVG00000010047	-	88	79.442	ENSGACG00000004373	dkc1	96	84.498	Gasterosteus_aculeatus
ENSCSAVG00000010047	-	88	78.987	ENSGAGG00000011330	DKC1	80	77.327	Gopherus_agassizii
ENSCSAVG00000010047	-	96	74.596	ENSGGOG00000001045	DKC1	81	76.145	Gorilla_gorilla
ENSCSAVG00000010047	-	93	76.372	ENSHBUG00000012436	dkc1	79	80.203	Haplochromis_burtoni
ENSCSAVG00000010047	-	88	78.228	ENSHGLG00000000649	DKC1	81	75.714	Heterocephalus_glaber_female
ENSCSAVG00000010047	-	88	78.228	ENSHGLG00100001153	DKC1	82	75.714	Heterocephalus_glaber_male
ENSCSAVG00000010047	-	88	79.241	ENSHCOG00000021099	dkc1	77	80.307	Hippocampus_comes
ENSCSAVG00000010047	-	95	75.708	ENSIPUG00000010309	dkc1	85	72.912	Ictalurus_punctatus
ENSCSAVG00000010047	-	88	70.886	ENSSTOG00000020149	-	81	68.735	Ictidomys_tridecemlineatus
ENSCSAVG00000010047	-	88	78.228	ENSSTOG00000001074	-	92	72.036	Ictidomys_tridecemlineatus
ENSCSAVG00000010047	-	88	68.354	ENSSTOG00000011904	-	78	65.340	Ictidomys_tridecemlineatus
ENSCSAVG00000010047	-	62	62.681	ENSJJAG00000010086	-	91	62.681	Jaculus_jaculus
ENSCSAVG00000010047	-	91	75.366	ENSKMAG00000008010	dkc1	79	78.061	Kryptolebias_marmoratus
ENSCSAVG00000010047	-	94	76.611	ENSLBEG00000019122	dkc1	84	77.885	Labrus_bergylta
ENSCSAVG00000010047	-	93	77.108	ENSLACG00000014025	DKC1	89	80.513	Latimeria_chalumnae
ENSCSAVG00000010047	-	92	78.450	ENSLOCG00000013713	dkc1	91	74.091	Lepisosteus_oculatus
ENSCSAVG00000010047	-	96	74.246	ENSLAFG00000000221	DKC1	91	68.973	Loxodonta_africana
ENSCSAVG00000010047	-	96	74.827	ENSMFAG00000032398	DKC1	70	75.952	Macaca_fascicularis
ENSCSAVG00000010047	-	96	74.246	ENSMMUG00000005768	DKC1	81	76.145	Macaca_mulatta
ENSCSAVG00000010047	-	96	74.246	ENSMNEG00000034503	DKC1	81	76.145	Macaca_nemestrina
ENSCSAVG00000010047	-	96	74.246	ENSMLEG00000034422	DKC1	81	76.145	Mandrillus_leucophaeus
ENSCSAVG00000010047	-	92	78.155	ENSMAMG00000005427	dkc1	89	80.101	Mastacembelus_armatus
ENSCSAVG00000010047	-	93	76.134	ENSMZEG00005014503	dkc1	79	79.949	Maylandia_zebra
ENSCSAVG00000010047	-	89	77.778	ENSMGAG00000009238	DKC1	84	78.866	Meleagris_gallopavo
ENSCSAVG00000010047	-	62	61.957	ENSMAUG00000016454	-	90	61.957	Mesocricetus_auratus
ENSCSAVG00000010047	-	88	77.215	ENSMICG00000038751	-	92	68.476	Microcebus_murinus
ENSCSAVG00000010047	-	81	72.527	ENSMICG00000002818	-	99	70.685	Microcebus_murinus
ENSCSAVG00000010047	-	62	59.420	ENSMOCG00000001169	-	90	59.420	Microtus_ochrogaster
ENSCSAVG00000010047	-	88	79.494	ENSMMOG00000020348	dkc1	86	79.494	Mola_mola
ENSCSAVG00000010047	-	93	73.995	ENSMODG00000009243	DKC1	68	78.974	Monodelphis_domestica
ENSCSAVG00000010047	-	91	77.372	ENSMALG00000009454	dkc1	78	79.949	Monopterus_albus
ENSCSAVG00000010047	-	88	67.742	MGP_CAROLIEiJ_G0033191	Dkc1	84	69.600	Mus_caroli
ENSCSAVG00000010047	-	88	77.975	ENSMUSG00000031403	Dkc1	82	76.190	Mus_musculus
ENSCSAVG00000010047	-	88	77.722	MGP_PahariEiJ_G0031735	Dkc1	82	75.714	Mus_pahari
ENSCSAVG00000010047	-	88	77.975	MGP_SPRETEiJ_G0034351	Dkc1	82	76.190	Mus_spretus
ENSCSAVG00000010047	-	88	78.228	ENSMPUG00000016136	DKC1	72	79.284	Mustela_putorius_furo
ENSCSAVG00000010047	-	88	74.937	ENSMLUG00000011918	DKC1	75	75.959	Myotis_lucifugus
ENSCSAVG00000010047	-	62	62.319	ENSNGAG00000015724	-	91	62.319	Nannospalax_galili
ENSCSAVG00000010047	-	90	79.052	ENSNBRG00000005638	dkc1	80	79.899	Neolamprologus_brichardi
ENSCSAVG00000010047	-	96	74.596	ENSNLEG00000014323	DKC1	81	76.145	Nomascus_leucogenys
ENSCSAVG00000010047	-	88	74.430	ENSMEUG00000001066	DKC1	86	75.064	Notamacropus_eugenii
ENSCSAVG00000010047	-	78	74.640	ENSOPRG00000005248	DKC1	69	74.640	Ochotona_princeps
ENSCSAVG00000010047	-	93	75.300	ENSODEG00000011816	-	82	75.060	Octodon_degus
ENSCSAVG00000010047	-	62	62.319	ENSODEG00000000549	-	90	62.319	Octodon_degus
ENSCSAVG00000010047	-	93	76.850	ENSONIG00000013889	dkc1	79	80.000	Oreochromis_niloticus
ENSCSAVG00000010047	-	51	67.841	ENSOANG00000022295	-	64	67.982	Ornithorhynchus_anatinus
ENSCSAVG00000010047	-	87	80.155	ENSOANG00000008713	-	85	76.386	Ornithorhynchus_anatinus
ENSCSAVG00000010047	-	96	73.903	ENSOCUG00000012646	DKC1	83	75.059	Oryctolagus_cuniculus
ENSCSAVG00000010047	-	95	70.953	ENSORLG00000018748	dkc1	86	72.146	Oryzias_latipes
ENSCSAVG00000010047	-	88	78.481	ENSOMEG00000005786	dkc1	80	78.970	Oryzias_melastigma
ENSCSAVG00000010047	-	88	78.481	ENSOGAG00000003399	DKC1	78	76.585	Otolemur_garnettii
ENSCSAVG00000010047	-	97	74.424	ENSOARG00000003047	DKC1	78	78.680	Ovis_aries
ENSCSAVG00000010047	-	93	76.329	ENSPPAG00000023820	DKC1	81	76.145	Pan_paniscus
ENSCSAVG00000010047	-	88	78.228	ENSPPRG00000009104	DKC1	84	74.588	Panthera_pardus
ENSCSAVG00000010047	-	88	78.228	ENSPTIG00000017469	DKC1	84	75.359	Panthera_tigris_altaica
ENSCSAVG00000010047	-	96	74.596	ENSPTRG00000022449	DKC1	81	76.145	Pan_troglodytes
ENSCSAVG00000010047	-	96	74.596	ENSPTRG00000043416	-	76	72.391	Pan_troglodytes
ENSCSAVG00000010047	-	96	74.246	ENSPANG00000011978	DKC1	81	76.145	Papio_anubis
ENSCSAVG00000010047	-	93	76.329	ENSPKIG00000008443	dkc1	85	78.803	Paramormyrops_kingsleyae
ENSCSAVG00000010047	-	82	80.109	ENSPSIG00000013765	DKC1	87	81.096	Pelodiscus_sinensis
ENSCSAVG00000010047	-	89	77.136	ENSPMGG00000004097	dkc1	77	73.759	Periophthalmus_magnuspinnatus
ENSCSAVG00000010047	-	72	82.069	ENSPEMG00000013348	Dkc1	73	82.069	Peromyscus_maniculatus_bairdii
ENSCSAVG00000010047	-	94	75.592	ENSPCIG00000016706	DKC1	66	79.028	Phascolarctos_cinereus
ENSCSAVG00000010047	-	88	79.241	ENSPFOG00000018653	dkc1	78	80.307	Poecilia_formosa
ENSCSAVG00000010047	-	88	79.241	ENSPLAG00000003272	dkc1	71	80.307	Poecilia_latipinna
ENSCSAVG00000010047	-	88	79.241	ENSPMEG00000010413	dkc1	78	80.307	Poecilia_mexicana
ENSCSAVG00000010047	-	89	79.345	ENSPREG00000004100	dkc1	81	77.240	Poecilia_reticulata
ENSCSAVG00000010047	-	96	74.596	ENSPPYG00000020892	DKC1	83	75.059	Pongo_abelii
ENSCSAVG00000010047	-	81	82.044	ENSPCAG00000015034	DKC1	71	82.094	Procavia_capensis
ENSCSAVG00000010047	-	88	77.975	ENSPCOG00000026874	DKC1	82	75.238	Propithecus_coquereli
ENSCSAVG00000010047	-	96	73.131	ENSPVAG00000009222	DKC1	78	78.517	Pteropus_vampyrus
ENSCSAVG00000010047	-	89	79.198	ENSPNYG00000020063	dkc1	79	79.648	Pundamilia_nyererei
ENSCSAVG00000010047	-	95	71.875	ENSPNAG00000005780	dkc1	88	72.851	Pygocentrus_nattereri
ENSCSAVG00000010047	-	88	75.253	ENSRNOG00000055562	Dkc1	83	71.132	Rattus_norvegicus
ENSCSAVG00000010047	-	96	74.596	ENSRBIG00000028457	DKC1	70	75.952	Rhinopithecus_bieti
ENSCSAVG00000010047	-	96	74.246	ENSRROG00000044780	DKC1	81	76.145	Rhinopithecus_roxellana
ENSCSAVG00000010047	-	85	68.074	YLR175W	-	78	68.074	Saccharomyces_cerevisiae
ENSCSAVG00000010047	-	96	74.596	ENSSBOG00000033746	DKC1	82	75.059	Saimiri_boliviensis_boliviensis
ENSCSAVG00000010047	-	96	75.000	ENSSHAG00000002463	DKC1	89	74.588	Sarcophilus_harrisii
ENSCSAVG00000010047	-	97	75.973	ENSSFOG00015009585	dkc1	81	79.087	Scleropages_formosus
ENSCSAVG00000010047	-	91	75.912	ENSSMAG00000002552	dkc1	79	79.231	Scophthalmus_maximus
ENSCSAVG00000010047	-	92	76.513	ENSSDUG00000009963	dkc1	78	79.847	Seriola_dumerili
ENSCSAVG00000010047	-	88	78.987	ENSSLDG00000019342	dkc1	82	78.987	Seriola_lalandi_dorsalis
ENSCSAVG00000010047	-	88	74.177	ENSSARG00000001822	DKC1	79	74.177	Sorex_araneus
ENSCSAVG00000010047	-	87	78.934	ENSSPUG00000018907	DKC1	75	79.135	Sphenodon_punctatus
ENSCSAVG00000010047	-	97	74.596	ENSSPAG00000002585	dkc1	77	78.412	Stegastes_partitus
ENSCSAVG00000010047	-	89	77.330	ENSSSCG00000012823	DKC1	86	75.604	Sus_scrofa
ENSCSAVG00000010047	-	89	78.030	ENSTGUG00000006781	DKC1	79	83.944	Taeniopygia_guttata
ENSCSAVG00000010047	-	92	77.859	ENSTRUG00000004413	dkc1	82	78.125	Takifugu_rubripes
ENSCSAVG00000010047	-	96	60.277	ENSTNIG00000002582	dkc1	82	62.264	Tetraodon_nigroviridis
ENSCSAVG00000010047	-	73	68.750	ENSTBEG00000011262	DKC1	82	75.251	Tupaia_belangeri
ENSCSAVG00000010047	-	62	77.536	ENSTTRG00000008089	DKC1	54	77.536	Tursiops_truncatus
ENSCSAVG00000010047	-	94	75.118	ENSUAMG00000022721	DKC1	83	78.880	Ursus_americanus
ENSCSAVG00000010047	-	94	74.645	ENSUMAG00000016899	DKC1	92	80.800	Ursus_maritimus
ENSCSAVG00000010047	-	96	57.269	ENSVVUG00000021671	-	85	57.269	Vulpes_vulpes
ENSCSAVG00000010047	-	97	71.681	ENSVVUG00000020734	-	84	67.490	Vulpes_vulpes
ENSCSAVG00000010047	-	93	75.663	ENSXETG00000032517	DKC1	90	69.481	Xenopus_tropicalis
ENSCSAVG00000010047	-	89	79.345	ENSXCOG00000005498	dkc1	88	77.372	Xiphophorus_couchianus
ENSCSAVG00000010047	-	99	70.084	ENSXMAG00000004919	dkc1	83	76.202	Xiphophorus_maculatus