EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000010291 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 13430 bases
Position: chrreftig_1:2623684-2637113
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000017475	ResIII	PF04851.15	1.4e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000017666	-	1716	-	ENSCSAVP00000017475	572 (aa)	-	H2ZIQ9
ENSCSAVT00000017667	-	1006	-	ENSCSAVP00000017476	329 (aa)	-	H2ZIR0

Gene Model

Click here to download ENSCSAVG00000010291's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000010291's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000010291	-	84	31.191	ENSCSAVG00000007529	-	77	31.191
ENSCSAVG00000010291	-	86	30.039	ENSCSAVG00000010859	-	61	30.039
ENSCSAVG00000010291	-	79	30.544	ENSCSAVG00000005900	-	50	37.662

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000010291	-	97	51.607	ENSAPOG00000011392	ercc6l	81	51.607	Acanthochromis_polyacanthus
ENSCSAVG00000010291	-	97	52.389	ENSATEG00000012969	ercc6l	51	52.389	Anabas_testudineus
ENSCSAVG00000010291	-	95	52.651	ENSACAG00000029354	-	77	52.651	Anolis_carolinensis
ENSCSAVG00000010291	-	95	52.651	ENSACAG00000028866	-	74	52.651	Anolis_carolinensis
ENSCSAVG00000010291	-	81	31.078	ENSAMXG00000035908	-	89	31.078	Astyanax_mexicanus
ENSCSAVG00000010291	-	98	53.464	ENSCPBG00000011965	ERCC6L	76	54.697	Chrysemys_picta_bellii
ENSCSAVG00000010291	-	98	51.950	ENSCVAG00000008090	ercc6l	78	51.950	Cyprinodon_variegatus
ENSCSAVG00000010291	-	95	51.554	ENSFHEG00000007269	-	78	51.554	Fundulus_heteroclitus
ENSCSAVG00000010291	-	69	61.538	ENSGAFG00000020545	-	99	61.538	Gambusia_affinis
ENSCSAVG00000010291	-	97	52.679	ENSGACG00000001096	ercc6l	96	52.679	Gasterosteus_aculeatus
ENSCSAVG00000010291	-	97	53.476	ENSLBEG00000000091	ercc6l	54	53.832	Labrus_bergylta
ENSCSAVG00000010291	-	68	39.332	ENSLOCG00000017476	-	95	39.332	Lepisosteus_oculatus
ENSCSAVG00000010291	-	97	53.641	ENSMMOG00000020762	ercc6l	83	71.429	Mola_mola
ENSCSAVG00000010291	-	81	62.694	ENSORLG00000024240	ercc6l	72	62.694	Oryzias_latipes
ENSCSAVG00000010291	-	97	53.357	ENSORLG00020014999	ercc6l	50	53.357	Oryzias_latipes_hni
ENSCSAVG00000010291	-	68	73.750	ENSORLG00015007108	ercc6l	70	73.750	Oryzias_latipes_hsok
ENSCSAVG00000010291	-	97	54.529	ENSPMGG00000023343	ercc6l	53	54.529	Periophthalmus_magnuspinnatus
ENSCSAVG00000010291	-	98	52.797	ENSPMAG00000005064	ercc6l	78	52.797	Petromyzon_marinus
ENSCSAVG00000010291	-	99	52.668	ENSPLAG00000005575	ercc6l	51	53.901	Poecilia_latipinna
ENSCSAVG00000010291	-	95	54.234	ENSPREG00000017617	ercc6l	50	54.234	Poecilia_reticulata
ENSCSAVG00000010291	-	99	51.635	ENSPNYG00000013185	ercc6l	52	52.381	Pundamilia_nyererei
ENSCSAVG00000010291	-	54	40.000	ENSPNAG00000029823	-	76	40.000	Pygocentrus_nattereri
ENSCSAVG00000010291	-	97	51.071	ENSSHAG00000001331	-	51	51.250	Sarcophilus_harrisii
ENSCSAVG00000010291	-	97	52.028	ENSSLDG00000014910	ercc6l	50	52.028	Seriola_lalandi_dorsalis
ENSCSAVG00000010291	-	98	52.900	ENSSPUG00000005866	ERCC6L	51	52.900	Sphenodon_punctatus
ENSCSAVG00000010291	-	97	53.014	ENSTGUG00000004992	ERCC6L	100	53.534	Taeniopygia_guttata
ENSCSAVG00000010291	-	97	52.105	ENSTNIG00000001002	ercc6l	100	52.105	Tetraodon_nigroviridis
ENSCSAVG00000010291	-	86	52.727	ENSXCOG00000011494	ercc6l	68	52.727	Xiphophorus_couchianus
ENSCSAVG00000010291	-	98	53.578	ENSXMAG00000000948	ercc6l	53	53.578	Xiphophorus_maculatus