EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000010397 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 15620 bases
Position: chrreftig_0:2917753-2933372
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000017661	RRM_1	PF00076.22	2.2e-28	1	2
ENSCSAVP00000017661	RRM_1	PF00076.22	2.2e-28	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000017853	-	982	-	ENSCSAVP00000017661	310 (aa)	-	H2ZJ95

Gene Model

Click here to download ENSCSAVG00000010397's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000010397's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000010397	-	60	44.944	ENSCSAVG00000004457	-	91	44.944
ENSCSAVG00000010397	-	62	36.788	ENSCSAVG00000000188	-	71	33.333
ENSCSAVG00000010397	-	61	39.205	ENSCSAVG00000009774	-	71	35.556
ENSCSAVG00000010397	-	61	40.000	ENSCSAVG00000000472	-	86	40.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000010397	-	75	65.772	ENSG00000153944	MSI2	94	66.129	Homo_sapiens
ENSCSAVG00000010397	-	95	53.667	ENSAPOG00000001658	msi2a	87	53.667	Acanthochromis_polyacanthus
ENSCSAVG00000010397	-	71	65.066	ENSAMEG00000002697	MSI2	65	66.216	Ailuropoda_melanoleuca
ENSCSAVG00000010397	-	66	65.347	ENSACIG00000009475	msi2a	51	64.734	Amphilophus_citrinellus
ENSCSAVG00000010397	-	56	57.937	ENSAOCG00000014822	msi2a	60	57.937	Amphiprion_ocellaris
ENSCSAVG00000010397	-	67	68.421	ENSAPEG00000007706	msi2a	62	64.251	Amphiprion_percula
ENSCSAVG00000010397	-	74	62.312	ENSATEG00000003301	-	54	72.327	Anabas_testudineus
ENSCSAVG00000010397	-	95	53.667	ENSATEG00000010498	msi2a	87	53.667	Anabas_testudineus
ENSCSAVG00000010397	-	76	63.750	ENSANAG00000037827	MSI2	87	66.216	Aotus_nancymaae
ENSCSAVG00000010397	-	95	57.143	ENSACLG00000007752	msi2a	87	54.000	Astatotilapia_calliptera
ENSCSAVG00000010397	-	94	55.000	ENSAMXG00000010474	msi2b	90	54.515	Astyanax_mexicanus
ENSCSAVG00000010397	-	69	68.224	ENSAMXG00000032796	msi2a	61	68.224	Astyanax_mexicanus
ENSCSAVG00000010397	-	72	65.517	ENSBTAG00000004406	MSI2	68	66.216	Bos_taurus
ENSCSAVG00000010397	-	62	66.327	WBGene00003423	msi-1	58	66.327	Caenorhabditis_elegans
ENSCSAVG00000010397	-	76	63.750	ENSCJAG00000013998	MSI2	87	66.216	Callithrix_jacchus
ENSCSAVG00000010397	-	76	62.222	ENSCAFG00020025620	MSI2	68	64.352	Canis_lupus_dingo
ENSCSAVG00000010397	-	72	65.517	ENSCHIG00000016580	MSI2	65	66.667	Capra_hircus
ENSCSAVG00000010397	-	71	66.848	ENSCPOG00000034042	MSI2	61	68.362	Cavia_porcellus
ENSCSAVG00000010397	-	76	63.750	ENSCCAG00000033927	MSI2	87	66.216	Cebus_capucinus
ENSCSAVG00000010397	-	76	63.750	ENSCATG00000040879	MSI2	87	66.216	Cercocebus_atys
ENSCSAVG00000010397	-	72	65.517	ENSCLAG00000014325	MSI2	73	58.252	Chinchilla_lanigera
ENSCSAVG00000010397	-	72	65.517	ENSCSAG00000005633	MSI2	65	66.667	Chlorocebus_sabaeus
ENSCSAVG00000010397	-	62	53.927	ENSCHOG00000008660	MSI2	64	53.927	Choloepus_hoffmanni
ENSCSAVG00000010397	-	94	55.906	ENSCPBG00000009942	MSI2	77	68.786	Chrysemys_picta_bellii
ENSCSAVG00000010397	-	69	87.200	ENSCING00000018579	-	98	86.047	Ciona_intestinalis
ENSCSAVG00000010397	-	76	63.750	ENSCANG00000036414	MSI2	87	66.216	Colobus_angolensis_palliatus
ENSCSAVG00000010397	-	72	65.517	ENSCGRG00001013330	Msi2	65	66.667	Cricetulus_griseus_chok1gshd
ENSCSAVG00000010397	-	71	65.066	ENSCGRG00000003141	Msi2	65	66.216	Cricetulus_griseus_crigri
ENSCSAVG00000010397	-	62	66.929	ENSCSEG00000013549	msi2a	90	54.598	Cynoglossus_semilaevis
ENSCSAVG00000010397	-	92	47.195	ENSCSEG00000003266	-	60	57.477	Cynoglossus_semilaevis
ENSCSAVG00000010397	-	95	53.667	ENSCVAG00000017075	msi2a	87	53.667	Cyprinodon_variegatus
ENSCSAVG00000010397	-	67	66.038	ENSDARG00000033901	msi2a	52	65.438	Danio_rerio
ENSCSAVG00000010397	-	66	74.766	ENSDARG00000032614	msi2b	100	70.000	Danio_rerio
ENSCSAVG00000010397	-	71	64.286	ENSDNOG00000014501	MSI2	67	65.517	Dasypus_novemcinctus
ENSCSAVG00000010397	-	61	65.574	ENSDORG00000028440	-	100	65.574	Dipodomys_ordii
ENSCSAVG00000010397	-	88	55.263	FBgn0260943	Rbp6	76	70.732	Drosophila_melanogaster
ENSCSAVG00000010397	-	90	45.659	ENSEBUG00000006732	msi2a	51	57.653	Eptatretus_burgeri
ENSCSAVG00000010397	-	71	65.066	ENSEASG00005002965	MSI2	59	66.516	Equus_asinus_asinus
ENSCSAVG00000010397	-	71	67.133	ENSECAG00000011435	MSI2	68	66.667	Equus_caballus
ENSCSAVG00000010397	-	55	52.514	ENSEEUG00000007810	MSI2	68	53.488	Erinaceus_europaeus
ENSCSAVG00000010397	-	94	53.952	ENSELUG00000011747	msi2a	69	68.932	Esox_lucius
ENSCSAVG00000010397	-	67	69.378	ENSELUG00000001361	msi2b	78	62.143	Esox_lucius
ENSCSAVG00000010397	-	76	63.750	ENSFCAG00000041686	MSI2	87	66.216	Felis_catus
ENSCSAVG00000010397	-	71	65.066	ENSFDAG00000016118	MSI2	65	66.216	Fukomys_damarensis
ENSCSAVG00000010397	-	67	68.421	ENSFHEG00000000084	msi2a	84	68.310	Fundulus_heteroclitus
ENSCSAVG00000010397	-	56	60.000	ENSGMOG00000007596	-	83	60.000	Gadus_morhua
ENSCSAVG00000010397	-	72	65.517	ENSGALG00000005567	MSI2	62	66.667	Gallus_gallus
ENSCSAVG00000010397	-	58	68.531	ENSGAFG00000006974	msi2a	80	68.310	Gambusia_affinis
ENSCSAVG00000010397	-	76	62.037	ENSGAGG00000016542	MSI2	60	67.188	Gopherus_agassizii
ENSCSAVG00000010397	-	71	68.116	ENSGGOG00000013182	MSI2	87	66.216	Gorilla_gorilla
ENSCSAVG00000010397	-	95	57.143	ENSHBUG00000020800	msi2a	87	54.000	Haplochromis_burtoni
ENSCSAVG00000010397	-	72	54.310	ENSHGLG00000012444	MSI2	68	60.417	Heterocephalus_glaber_female
ENSCSAVG00000010397	-	57	65.854	ENSHGLG00100004028	-	87	65.854	Heterocephalus_glaber_male
ENSCSAVG00000010397	-	67	67.943	ENSHCOG00000000266	msi2a	57	67.290	Hippocampus_comes
ENSCSAVG00000010397	-	67	68.900	ENSIPUG00000003732	msi2b	58	68.224	Ictalurus_punctatus
ENSCSAVG00000010397	-	95	58.305	ENSIPUG00000021097	msi2a	87	54.817	Ictalurus_punctatus
ENSCSAVG00000010397	-	71	66.848	ENSSTOG00000007884	MSI2	61	68.362	Ictidomys_tridecemlineatus
ENSCSAVG00000010397	-	61	65.574	ENSJJAG00000009467	-	100	65.574	Jaculus_jaculus
ENSCSAVG00000010397	-	67	67.943	ENSKMAG00000009494	msi2a	61	67.290	Kryptolebias_marmoratus
ENSCSAVG00000010397	-	67	68.421	ENSLBEG00000007061	msi2a	76	65.873	Labrus_bergylta
ENSCSAVG00000010397	-	74	63.500	ENSLBEG00000026223	-	50	67.033	Labrus_bergylta
ENSCSAVG00000010397	-	57	60.638	ENSLACG00000016798	MSI2	91	60.638	Latimeria_chalumnae
ENSCSAVG00000010397	-	67	68.900	ENSLOCG00000004675	msi2b	85	55.263	Lepisosteus_oculatus
ENSCSAVG00000010397	-	76	63.750	ENSMFAG00000003775	MSI2	87	66.216	Macaca_fascicularis
ENSCSAVG00000010397	-	76	63.750	ENSMMUG00000002069	MSI2	87	66.216	Macaca_mulatta
ENSCSAVG00000010397	-	76	63.750	ENSMNEG00000045275	MSI2	87	66.216	Macaca_nemestrina
ENSCSAVG00000010397	-	76	63.750	ENSMLEG00000033888	MSI2	87	66.216	Mandrillus_leucophaeus
ENSCSAVG00000010397	-	67	67.943	ENSMAMG00000002488	-	87	67.606	Mastacembelus_armatus
ENSCSAVG00000010397	-	95	53.667	ENSMAMG00000010503	msi2a	81	60.993	Mastacembelus_armatus
ENSCSAVG00000010397	-	95	57.143	ENSMZEG00005007676	msi2a	87	54.000	Maylandia_zebra
ENSCSAVG00000010397	-	72	65.517	ENSMAUG00000003862	Msi2	62	66.667	Mesocricetus_auratus
ENSCSAVG00000010397	-	61	64.550	ENSMICG00000032913	-	87	48.148	Microcebus_murinus
ENSCSAVG00000010397	-	76	63.750	ENSMICG00000013598	-	87	66.216	Microcebus_murinus
ENSCSAVG00000010397	-	72	65.517	ENSMOCG00000005820	Msi2	62	66.667	Microtus_ochrogaster
ENSCSAVG00000010397	-	94	53.642	ENSMMOG00000008348	msi2a	83	63.235	Mola_mola
ENSCSAVG00000010397	-	95	56.803	ENSMALG00000000071	msi2a	87	53.667	Monopterus_albus
ENSCSAVG00000010397	-	72	65.517	MGP_CAROLIEiJ_G0016948	Msi2	100	65.574	Mus_caroli
ENSCSAVG00000010397	-	72	65.517	ENSMUSG00000069769	Msi2	100	65.574	Mus_musculus
ENSCSAVG00000010397	-	72	65.517	MGP_PahariEiJ_G0018079	Msi2	100	65.574	Mus_pahari
ENSCSAVG00000010397	-	72	65.517	MGP_SPRETEiJ_G0017795	Msi2	100	65.574	Mus_spretus
ENSCSAVG00000010397	-	71	65.066	ENSMPUG00000015377	MSI2	68	66.216	Mustela_putorius_furo
ENSCSAVG00000010397	-	71	65.066	ENSMLUG00000007865	MSI2	68	66.216	Myotis_lucifugus
ENSCSAVG00000010397	-	72	65.517	ENSNGAG00000017807	Msi2	62	66.667	Nannospalax_galili
ENSCSAVG00000010397	-	67	68.900	ENSNBRG00000014596	msi2a	81	68.531	Neolamprologus_brichardi
ENSCSAVG00000010397	-	71	68.116	ENSNLEG00000008059	MSI2	89	65.217	Nomascus_leucogenys
ENSCSAVG00000010397	-	72	65.517	ENSODEG00000011974	MSI2	62	66.667	Octodon_degus
ENSCSAVG00000010397	-	58	68.310	ENSONIG00000001972	msi2a	74	68.310	Oreochromis_niloticus
ENSCSAVG00000010397	-	72	64.935	ENSOANG00000005667	MSI2	50	66.071	Ornithorhynchus_anatinus
ENSCSAVG00000010397	-	71	65.066	ENSOCUG00000010440	MSI2	68	66.216	Oryctolagus_cuniculus
ENSCSAVG00000010397	-	95	56.803	ENSORLG00000009671	msi2a	87	53.667	Oryzias_latipes
ENSCSAVG00000010397	-	95	56.803	ENSORLG00020021556	msi2a	87	53.667	Oryzias_latipes_hni
ENSCSAVG00000010397	-	95	56.803	ENSORLG00015004592	msi2a	87	53.667	Oryzias_latipes_hsok
ENSCSAVG00000010397	-	95	56.803	ENSOMEG00000000146	msi2a	87	53.667	Oryzias_melastigma
ENSCSAVG00000010397	-	71	60.262	ENSOGAG00000005621	MSI2	68	61.261	Otolemur_garnettii
ENSCSAVG00000010397	-	71	65.066	ENSPPAG00000037697	MSI2	87	66.216	Pan_paniscus
ENSCSAVG00000010397	-	76	63.750	ENSPPRG00000001848	MSI2	87	66.216	Panthera_pardus
ENSCSAVG00000010397	-	76	62.389	ENSPTIG00000021678	MSI2	78	65.217	Panthera_tigris_altaica
ENSCSAVG00000010397	-	78	51.822	ENSPTIG00000021873	-	74	55.924	Panthera_tigris_altaica
ENSCSAVG00000010397	-	71	68.116	ENSPTRG00000009437	MSI2	87	66.216	Pan_troglodytes
ENSCSAVG00000010397	-	76	63.750	ENSPANG00000022319	MSI2	87	66.216	Papio_anubis
ENSCSAVG00000010397	-	95	56.026	ENSPKIG00000007038	-	83	54.817	Paramormyrops_kingsleyae
ENSCSAVG00000010397	-	72	65.517	ENSPSIG00000008618	MSI2	53	66.667	Pelodiscus_sinensis
ENSCSAVG00000010397	-	66	64.851	ENSPMGG00000005888	msi2a	62	64.251	Periophthalmus_magnuspinnatus
ENSCSAVG00000010397	-	61	65.574	ENSPEMG00000021793	-	100	65.574	Peromyscus_maniculatus_bairdii
ENSCSAVG00000010397	-	95	52.493	ENSPCIG00000006063	MSI2	60	66.667	Phascolarctos_cinereus
ENSCSAVG00000010397	-	59	59.375	ENSPFOG00000019337	MSI2	81	59.375	Poecilia_formosa
ENSCSAVG00000010397	-	58	63.433	ENSPLAG00000000436	msi2a	66	63.910	Poecilia_latipinna
ENSCSAVG00000010397	-	56	57.480	ENSPMEG00000013247	msi2a	73	57.937	Poecilia_mexicana
ENSCSAVG00000010397	-	67	68.421	ENSPREG00000000881	msi2a	60	64.851	Poecilia_reticulata
ENSCSAVG00000010397	-	71	64.238	ENSPPYG00000008244	-	59	65.972	Pongo_abelii
ENSCSAVG00000010397	-	57	69.065	ENSPCOG00000019195	-	94	69.065	Propithecus_coquereli
ENSCSAVG00000010397	-	66	68.063	ENSPVAG00000017053	MSI2	61	68.063	Pteropus_vampyrus
ENSCSAVG00000010397	-	95	57.143	ENSPNYG00000018393	msi2a	87	54.000	Pundamilia_nyererei
ENSCSAVG00000010397	-	67	68.900	ENSPNAG00000014957	msi2a	61	68.224	Pygocentrus_nattereri
ENSCSAVG00000010397	-	67	68.900	ENSPNAG00000000844	msi2b	59	67.005	Pygocentrus_nattereri
ENSCSAVG00000010397	-	71	65.500	ENSRNOG00000025338	Msi2	65	66.839	Rattus_norvegicus
ENSCSAVG00000010397	-	57	65.854	ENSRROG00000034421	-	93	65.854	Rhinopithecus_roxellana
ENSCSAVG00000010397	-	75	68.613	ENSSBOG00000026425	MSI2	87	66.216	Saimiri_boliviensis_boliviensis
ENSCSAVG00000010397	-	94	54.403	ENSSHAG00000008672	MSI2	65	66.063	Sarcophilus_harrisii
ENSCSAVG00000010397	-	94	56.376	ENSSFOG00015021687	-	90	56.040	Scleropages_formosus
ENSCSAVG00000010397	-	95	56.803	ENSSMAG00000018484	msi2a	87	53.667	Scophthalmus_maximus
ENSCSAVG00000010397	-	95	53.667	ENSSDUG00000014507	msi2a	87	53.667	Seriola_dumerili
ENSCSAVG00000010397	-	62	67.606	ENSSDUG00000021968	-	88	67.606	Seriola_dumerili
ENSCSAVG00000010397	-	95	53.667	ENSSLDG00000017172	msi2a	87	53.667	Seriola_lalandi_dorsalis
ENSCSAVG00000010397	-	58	67.785	ENSSPUG00000000913	-	83	67.785	Sphenodon_punctatus
ENSCSAVG00000010397	-	95	53.691	ENSSPAG00000017793	msi2a	87	53.667	Stegastes_partitus
ENSCSAVG00000010397	-	76	62.857	ENSSSCG00000038505	MSI2	70	66.667	Sus_scrofa
ENSCSAVG00000010397	-	67	68.421	ENSTRUG00000021248	msi2a	54	66.839	Takifugu_rubripes
ENSCSAVG00000010397	-	71	53.509	ENSTBEG00000001241	MSI2	64	54.299	Tupaia_belangeri
ENSCSAVG00000010397	-	71	68.874	ENSTTRG00000002189	MSI2	60	70.833	Tursiops_truncatus
ENSCSAVG00000010397	-	76	63.750	ENSUAMG00000000700	MSI2	87	66.216	Ursus_americanus
ENSCSAVG00000010397	-	75	62.441	ENSUMAG00000000505	MSI2	71	66.839	Ursus_maritimus
ENSCSAVG00000010397	-	66	54.974	ENSVPAG00000006837	-	61	54.974	Vicugna_pacos
ENSCSAVG00000010397	-	94	53.571	ENSVVUG00000011783	MSI2	62	66.667	Vulpes_vulpes
ENSCSAVG00000010397	-	67	66.507	ENSXCOG00000006113	msi2a	59	60.924	Xiphophorus_couchianus
ENSCSAVG00000010397	-	95	56.803	ENSXMAG00000000608	msi2a	87	53.667	Xiphophorus_maculatus