EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000010662 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 9833 bases
Position: chrreftig_48:1870472-1880304
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000018130	zf-C2H2	PF00096.26	1.8e-20	1	3
ENSCSAVP00000018130	zf-C2H2	PF00096.26	1.8e-20	2	3
ENSCSAVP00000018130	zf-C2H2	PF00096.26	1.8e-20	3	3
ENSCSAVP00000018129	zf-C2H2	PF00096.26	2.1e-20	1	3
ENSCSAVP00000018129	zf-C2H2	PF00096.26	2.1e-20	2	3
ENSCSAVP00000018129	zf-C2H2	PF00096.26	2.1e-20	3	3
ENSCSAVP00000018130	zf-met	PF12874.7	5.9e-16	1	3
ENSCSAVP00000018130	zf-met	PF12874.7	5.9e-16	2	3
ENSCSAVP00000018130	zf-met	PF12874.7	5.9e-16	3	3
ENSCSAVP00000018129	zf-met	PF12874.7	6.7e-16	1	3
ENSCSAVP00000018129	zf-met	PF12874.7	6.7e-16	2	3
ENSCSAVP00000018129	zf-met	PF12874.7	6.7e-16	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000018326	-	2938	-	ENSCSAVP00000018129	837 (aa)	-	H2ZKL3
ENSCSAVT00000018327	-	2894	-	ENSCSAVP00000018130	823 (aa)	-	H2ZKL4

Gene Model

Click here to download ENSCSAVG00000010662's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000010662's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000010662	-	62	33.566	ENSCSAVG00000000673	-	95	38.571
ENSCSAVG00000010662	-	52	33.846	ENSCSAVG00000006650	-	99	44.898
ENSCSAVG00000010662	-	55	30.882	ENSCSAVG00000004678	-	96	49.123
ENSCSAVG00000010662	-	59	30.769	ENSCSAVG00000000293	-	96	38.462
ENSCSAVG00000010662	-	62	49.020	ENSCSAVG00000004499	-	96	46.296
ENSCSAVG00000010662	-	54	31.818	ENSCSAVG00000007589	-	99	41.509
ENSCSAVG00000010662	-	64	40.696	ENSCSAVG00000009421	-	100	36.662
ENSCSAVG00000010662	-	53	52.000	ENSCSAVG00000006608	-	99	30.693

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000010662	-	98	66.000	ENSCING00000003802	-	94	66.235	Ciona_intestinalis
ENSCSAVG00000010662	-	51	56.897	ENSCING00000005289	-	54	56.897	Ciona_intestinalis