EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000010859 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 12594 bases
Position: chrreftig_48:2475715-2488308
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000018504	ResIII	PF04851.15	3.1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000018706	-	391	-	ENSCSAVP00000018506	79 (aa)	-	H2ZLP0
ENSCSAVT00000018704	-	2782	-	ENSCSAVP00000018504	760 (aa)	-	H2ZLN8
ENSCSAVT00000018705	-	937	-	ENSCSAVP00000018505	144 (aa)	-	H2ZLN9

Gene Model

Click here to download ENSCSAVG00000010859's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000010859's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000010859	-	61	30.039	ENSCSAVG00000010291	-	86	30.039
ENSCSAVG00000010859	-	66	30.095	ENSCSAVG00000005900	-	67	30.095
ENSCSAVG00000010859	-	68	30.769	ENSCSAVG00000002116	-	99	30.769

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000010859	-	99	62.809	ENSG00000085999	RAD54L	100	76.000	Homo_sapiens
ENSCSAVG00000010859	-	99	60.471	ENSAPOG00000011643	rad54l	99	60.340	Acanthochromis_polyacanthus
ENSCSAVG00000010859	-	99	63.103	ENSAMEG00000013902	RAD54L	99	63.103	Ailuropoda_melanoleuca
ENSCSAVG00000010859	-	99	62.565	ENSACIG00000001939	rad54l	99	62.435	Amphilophus_citrinellus
ENSCSAVG00000010859	-	99	63.007	ENSAOCG00000017576	rad54l	100	62.876	Amphiprion_ocellaris
ENSCSAVG00000010859	-	94	64.771	ENSAPEG00000020658	rad54l	96	64.632	Amphiprion_percula
ENSCSAVG00000010859	-	94	64.820	ENSATEG00000006767	rad54l	99	64.820	Anabas_testudineus
ENSCSAVG00000010859	-	94	65.284	ENSAPLG00000006389	RAD54L	99	65.284	Anas_platyrhynchos
ENSCSAVG00000010859	-	99	63.281	ENSACAG00000002312	RAD54L	99	63.281	Anolis_carolinensis
ENSCSAVG00000010859	-	99	62.939	ENSANAG00000035439	RAD54L	99	63.021	Aotus_nancymaae
ENSCSAVG00000010859	-	100	62.222	ENSACLG00000018711	rad54l	100	62.092	Astatotilapia_calliptera
ENSCSAVG00000010859	-	100	63.885	ENSAMXG00000012777	rad54l	100	63.755	Astyanax_mexicanus
ENSCSAVG00000010859	-	99	62.987	ENSBTAG00000019901	RAD54L	99	63.069	Bos_taurus
ENSCSAVG00000010859	-	88	57.184	WBGene00004298	rad-54	82	57.184	Caenorhabditis_elegans
ENSCSAVG00000010859	-	96	63.342	ENSCJAG00000021080	RAD54L	91	63.428	Callithrix_jacchus
ENSCSAVG00000010859	-	99	63.411	ENSCAFG00000004272	RAD54L	99	63.411	Canis_familiaris
ENSCSAVG00000010859	-	99	63.364	ENSCAFG00020015066	RAD54L	99	63.364	Canis_lupus_dingo
ENSCSAVG00000010859	-	99	62.939	ENSCHIG00000020118	RAD54L	99	63.021	Capra_hircus
ENSCSAVG00000010859	-	99	62.159	ENSTSYG00000002032	RAD54L	99	62.240	Carlito_syrichta
ENSCSAVG00000010859	-	99	62.613	ENSCPOG00000006768	RAD54L	99	62.679	Cavia_porcellus
ENSCSAVG00000010859	-	99	62.679	ENSCCAG00000025783	RAD54L	99	62.760	Cebus_capucinus
ENSCSAVG00000010859	-	99	62.679	ENSCATG00000030589	RAD54L	99	62.760	Cercocebus_atys
ENSCSAVG00000010859	-	99	62.939	ENSCLAG00000004645	RAD54L	99	63.021	Chinchilla_lanigera
ENSCSAVG00000010859	-	99	62.809	ENSCSAG00000001229	RAD54L	99	62.891	Chlorocebus_sabaeus
ENSCSAVG00000010859	-	99	62.842	ENSCPBG00000005675	RAD54L	99	62.794	Chrysemys_picta_bellii
ENSCSAVG00000010859	-	100	81.701	ENSCING00000024456	-	100	81.701	Ciona_intestinalis
ENSCSAVG00000010859	-	99	62.809	ENSCANG00000034891	RAD54L	99	62.891	Colobus_angolensis_palliatus
ENSCSAVG00000010859	-	99	63.007	ENSCGRG00001014807	Rad54l	99	63.007	Cricetulus_griseus_chok1gshd
ENSCSAVG00000010859	-	99	63.007	ENSCGRG00000016038	Rad54l	99	63.007	Cricetulus_griseus_crigri
ENSCSAVG00000010859	-	99	62.500	ENSCSEG00000001983	rad54l	99	62.500	Cynoglossus_semilaevis
ENSCSAVG00000010859	-	75	70.161	ENSCVAG00000019561	rad54l	99	70.161	Cyprinodon_variegatus
ENSCSAVG00000010859	-	100	64.706	ENSDARG00000018623	rad54l	100	64.575	Danio_rerio
ENSCSAVG00000010859	-	99	63.117	ENSDNOG00000003395	RAD54L	99	63.199	Dasypus_novemcinctus
ENSCSAVG00000010859	-	99	57.124	ENSDORG00000002632	Rad54l	99	57.588	Dipodomys_ordii
ENSCSAVG00000010859	-	97	53.538	FBgn0002989	okr	93	53.538	Drosophila_melanogaster
ENSCSAVG00000010859	-	78	60.707	ENSETEG00000000550	RAD54L	77	60.833	Echinops_telfairi
ENSCSAVG00000010859	-	99	62.500	ENSEASG00005004511	RAD54L	96	66.766	Equus_asinus_asinus
ENSCSAVG00000010859	-	99	62.939	ENSECAG00000008760	RAD54L	95	67.160	Equus_caballus
ENSCSAVG00000010859	-	88	66.617	ENSEEUG00000008113	RAD54L	90	66.716	Erinaceus_europaeus
ENSCSAVG00000010859	-	100	64.026	ENSELUG00000002295	rad54l	100	64.026	Esox_lucius
ENSCSAVG00000010859	-	99	62.370	ENSFCAG00000003444	RAD54L	99	62.370	Felis_catus
ENSCSAVG00000010859	-	99	63.672	ENSFALG00000009480	RAD54L	99	63.672	Ficedula_albicollis
ENSCSAVG00000010859	-	99	62.679	ENSFDAG00000007806	RAD54L	99	62.760	Fukomys_damarensis
ENSCSAVG00000010859	-	61	60.722	ENSFHEG00000009824	rad54l	78	60.722	Fundulus_heteroclitus
ENSCSAVG00000010859	-	99	61.649	ENSGMOG00000014568	rad54l	100	61.649	Gadus_morhua
ENSCSAVG00000010859	-	99	63.708	ENSGALG00000010356	RAD54L	92	63.708	Gallus_gallus
ENSCSAVG00000010859	-	91	63.506	ENSGAFG00000011110	rad54l	99	63.506	Gambusia_affinis
ENSCSAVG00000010859	-	100	62.141	ENSGACG00000003111	rad54l	98	62.141	Gasterosteus_aculeatus
ENSCSAVG00000010859	-	99	62.435	ENSGAGG00000014089	RAD54L	96	62.385	Gopherus_agassizii
ENSCSAVG00000010859	-	99	62.419	ENSGGOG00000010602	RAD54L	99	62.500	Gorilla_gorilla
ENSCSAVG00000010859	-	100	62.092	ENSHBUG00000007793	rad54l	100	61.961	Haplochromis_burtoni
ENSCSAVG00000010859	-	99	62.419	ENSHGLG00000000753	RAD54L	99	62.500	Heterocephalus_glaber_female
ENSCSAVG00000010859	-	99	62.419	ENSHGLG00100016987	RAD54L	99	62.500	Heterocephalus_glaber_male
ENSCSAVG00000010859	-	100	62.321	ENSIPUG00000015999	rad54l	100	64.078	Ictalurus_punctatus
ENSCSAVG00000010859	-	99	62.891	ENSSTOG00000029125	RAD54L	99	62.891	Ictidomys_tridecemlineatus
ENSCSAVG00000010859	-	99	52.418	ENSJJAG00000000235	-	99	52.418	Jaculus_jaculus
ENSCSAVG00000010859	-	100	63.007	ENSKMAG00000009944	rad54l	100	63.089	Kryptolebias_marmoratus
ENSCSAVG00000010859	-	99	62.910	ENSLBEG00000014617	rad54l	98	67.257	Labrus_bergylta
ENSCSAVG00000010859	-	99	63.529	ENSLOCG00000004144	rad54l	99	65.306	Lepisosteus_oculatus
ENSCSAVG00000010859	-	99	63.281	ENSLAFG00000007583	RAD54L	99	63.281	Loxodonta_africana
ENSCSAVG00000010859	-	99	62.679	ENSMFAG00000031241	RAD54L	99	62.760	Macaca_fascicularis
ENSCSAVG00000010859	-	99	62.679	ENSMMUG00000011568	RAD54L	99	62.760	Macaca_mulatta
ENSCSAVG00000010859	-	99	62.549	ENSMNEG00000038562	RAD54L	99	62.630	Macaca_nemestrina
ENSCSAVG00000010859	-	99	62.679	ENSMLEG00000038145	RAD54L	99	62.760	Mandrillus_leucophaeus
ENSCSAVG00000010859	-	99	62.336	ENSMAMG00000022180	rad54l	99	67.160	Mastacembelus_armatus
ENSCSAVG00000010859	-	100	62.353	ENSMZEG00005018081	rad54l	100	62.092	Maylandia_zebra
ENSCSAVG00000010859	-	99	63.791	ENSMGAG00000010634	RAD54L	99	63.791	Meleagris_gallopavo
ENSCSAVG00000010859	-	99	62.876	ENSMAUG00000020076	Rad54l	99	62.876	Mesocricetus_auratus
ENSCSAVG00000010859	-	99	62.679	ENSMICG00000003266	RAD54L	99	62.760	Microcebus_murinus
ENSCSAVG00000010859	-	99	63.137	ENSMOCG00000001778	Rad54l	99	63.137	Microtus_ochrogaster
ENSCSAVG00000010859	-	99	61.257	ENSMALG00000021148	rad54l	99	61.257	Monopterus_albus
ENSCSAVG00000010859	-	99	61.408	MGP_CAROLIEiJ_G0026325	Rad54l	99	61.408	Mus_caroli
ENSCSAVG00000010859	-	99	63.069	ENSMUSG00000028702	Rad54l	99	63.069	Mus_musculus
ENSCSAVG00000010859	-	99	62.939	MGP_PahariEiJ_G0028657	Rad54l	99	62.760	Mus_pahari
ENSCSAVG00000010859	-	99	62.939	MGP_SPRETEiJ_G0027297	Rad54l	99	62.939	Mus_spretus
ENSCSAVG00000010859	-	99	62.630	ENSMPUG00000012883	RAD54L	99	62.630	Mustela_putorius_furo
ENSCSAVG00000010859	-	99	63.411	ENSMLUG00000003763	RAD54L	99	63.494	Myotis_lucifugus
ENSCSAVG00000010859	-	99	62.468	ENSNGAG00000024213	Rad54l	99	62.549	Nannospalax_galili
ENSCSAVG00000010859	-	99	62.630	ENSNLEG00000016548	RAD54L	99	62.500	Nomascus_leucogenys
ENSCSAVG00000010859	-	88	65.185	ENSMEUG00000006793	RAD54L	99	65.282	Notamacropus_eugenii
ENSCSAVG00000010859	-	91	66.551	ENSOPRG00000016016	RAD54L	90	66.551	Ochotona_princeps
ENSCSAVG00000010859	-	99	62.727	ENSODEG00000008519	RAD54L	99	62.679	Octodon_degus
ENSCSAVG00000010859	-	100	62.222	ENSONIG00000007659	rad54l	100	62.092	Oreochromis_niloticus
ENSCSAVG00000010859	-	99	62.419	ENSOCUG00000005229	RAD54L	99	62.500	Oryctolagus_cuniculus
ENSCSAVG00000010859	-	88	67.208	ENSORLG00000002958	rad54l	99	62.598	Oryzias_latipes
ENSCSAVG00000010859	-	99	62.861	ENSORLG00020006554	rad54l	99	67.208	Oryzias_latipes_hni
ENSCSAVG00000010859	-	99	62.779	ENSORLG00015002907	rad54l	99	62.730	Oryzias_latipes_hsok
ENSCSAVG00000010859	-	99	62.910	ENSOMEG00000007770	rad54l	99	62.861	Oryzias_melastigma
ENSCSAVG00000010859	-	99	62.646	ENSOARG00000002264	RAD54L	99	62.987	Ovis_aries
ENSCSAVG00000010859	-	99	62.679	ENSPPAG00000031222	RAD54L	99	62.760	Pan_paniscus
ENSCSAVG00000010859	-	99	62.240	ENSPPRG00000010317	RAD54L	99	62.240	Panthera_pardus
ENSCSAVG00000010859	-	99	62.240	ENSPTIG00000012200	RAD54L	99	62.240	Panthera_tigris_altaica
ENSCSAVG00000010859	-	99	62.760	ENSPTRG00000000689	RAD54L	99	62.891	Pan_troglodytes
ENSCSAVG00000010859	-	99	62.679	ENSPANG00000016295	RAD54L	99	62.760	Papio_anubis
ENSCSAVG00000010859	-	100	60.468	ENSPKIG00000016172	rad54l	100	60.807	Paramormyrops_kingsleyae
ENSCSAVG00000010859	-	98	63.095	ENSPSIG00000003258	RAD54L	99	63.046	Pelodiscus_sinensis
ENSCSAVG00000010859	-	99	60.499	ENSPMGG00000016335	rad54l	99	60.499	Periophthalmus_magnuspinnatus
ENSCSAVG00000010859	-	99	63.268	ENSPEMG00000011422	Rad54l	99	63.268	Peromyscus_maniculatus_bairdii
ENSCSAVG00000010859	-	99	58.215	ENSPMAG00000007719	rad54l	99	58.215	Petromyzon_marinus
ENSCSAVG00000010859	-	99	63.802	ENSPCIG00000029032	RAD54L	99	63.885	Phascolarctos_cinereus
ENSCSAVG00000010859	-	85	66.156	ENSPFOG00000013732	rad54l	99	66.156	Poecilia_formosa
ENSCSAVG00000010859	-	80	66.613	ENSPLAG00000023416	rad54l	99	66.613	Poecilia_latipinna
ENSCSAVG00000010859	-	91	64.368	ENSPMEG00000008299	rad54l	99	64.368	Poecilia_mexicana
ENSCSAVG00000010859	-	100	62.696	ENSPREG00000019955	rad54l	100	62.696	Poecilia_reticulata
ENSCSAVG00000010859	-	99	51.688	ENSPPYG00000001398	RAD54L	99	50.975	Pongo_abelii
ENSCSAVG00000010859	-	80	70.244	ENSPCAG00000005323	RAD54L	79	70.244	Procavia_capensis
ENSCSAVG00000010859	-	99	63.199	ENSPCOG00000015423	RAD54L	99	63.281	Propithecus_coquereli
ENSCSAVG00000010859	-	89	64.431	ENSPNYG00000002942	rad54l	95	64.920	Pundamilia_nyererei
ENSCSAVG00000010859	-	100	63.399	ENSPNAG00000012483	rad54l	100	63.268	Pygocentrus_nattereri
ENSCSAVG00000010859	-	99	63.117	ENSRNOG00000013148	Rad54l	99	63.117	Rattus_norvegicus
ENSCSAVG00000010859	-	99	62.809	ENSRBIG00000043495	RAD54L	99	62.891	Rhinopithecus_bieti
ENSCSAVG00000010859	-	99	62.809	ENSRROG00000020844	RAD54L	99	62.891	Rhinopithecus_roxellana
ENSCSAVG00000010859	-	78	47.597	YGL163C	RAD54	71	48.690	Saccharomyces_cerevisiae
ENSCSAVG00000010859	-	99	62.939	ENSSBOG00000024672	RAD54L	99	63.021	Saimiri_boliviensis_boliviensis
ENSCSAVG00000010859	-	99	63.719	ENSSHAG00000000110	RAD54L	99	63.802	Sarcophilus_harrisii
ENSCSAVG00000010859	-	100	63.838	ENSSDUG00000019147	rad54l	100	63.838	Seriola_dumerili
ENSCSAVG00000010859	-	100	63.969	ENSSLDG00000012330	rad54l	96	67.994	Seriola_lalandi_dorsalis
ENSCSAVG00000010859	-	83	62.754	ENSSARG00000006689	RAD54L	99	62.853	Sorex_araneus
ENSCSAVG00000010859	-	99	62.304	ENSSPAG00000011016	rad54l	100	62.254	Stegastes_partitus
ENSCSAVG00000010859	-	99	62.760	ENSSSCG00000003905	RAD54L	99	62.842	Sus_scrofa
ENSCSAVG00000010859	-	99	63.268	ENSTGUG00000008233	RAD54L	99	63.542	Taeniopygia_guttata
ENSCSAVG00000010859	-	89	65.685	ENSTRUG00000008410	rad54l	95	65.685	Takifugu_rubripes
ENSCSAVG00000010859	-	99	60.105	ENSTNIG00000004716	rad54l	99	60.236	Tetraodon_nigroviridis
ENSCSAVG00000010859	-	88	64.254	ENSTTRG00000006315	RAD54L	90	64.645	Tursiops_truncatus
ENSCSAVG00000010859	-	99	62.779	ENSUAMG00000011824	RAD54L	99	62.779	Ursus_americanus
ENSCSAVG00000010859	-	99	61.861	ENSUMAG00000023603	RAD54L	99	61.861	Ursus_maritimus
ENSCSAVG00000010859	-	99	63.542	ENSVVUG00000007201	RAD54L	99	63.542	Vulpes_vulpes
ENSCSAVG00000010859	-	94	60.779	ENSXETG00000004369	rad54l	97	60.724	Xenopus_tropicalis
ENSCSAVG00000010859	-	56	61.072	ENSXCOG00000016028	rad54l	84	61.072	Xiphophorus_couchianus