EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000010927 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 12535 bases
Position: chrreftig_1:3641829-3654363
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000018596	TRM	PF02005.16	8.9e-130	1	1
ENSCSAVP00000018597	TRM	PF02005.16	8.9e-126	1	1
ENSCSAVP00000018596	Met_10	PF02475.16	1.8e-06	1	1
ENSCSAVP00000018597	Met_10	PF02475.16	2.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000018799	-	1689	-	ENSCSAVP00000018597	532 (aa)	-	H2ZLY1
ENSCSAVT00000018798	-	1781	-	ENSCSAVP00000018596	543 (aa)	-	H2ZLY0

Gene Model

Click here to download ENSCSAVG00000010927's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000010927's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000010927	-	100	45.911	ENSG00000104907	TRMT1	99	52.910	Homo_sapiens
ENSCSAVG00000010927	-	100	45.387	ENSAMEG00000012598	TRMT1	82	45.848	Ailuropoda_melanoleuca
ENSCSAVG00000010927	-	97	41.856	ENSACIG00000018680	trmt1	83	41.856	Amphilophus_citrinellus
ENSCSAVG00000010927	-	100	48.440	ENSAOCG00000006781	trmt1	81	50.000	Amphiprion_ocellaris
ENSCSAVG00000010927	-	100	48.440	ENSAPEG00000007712	trmt1	81	50.000	Amphiprion_percula
ENSCSAVG00000010927	-	100	49.630	ENSATEG00000001872	trmt1	81	51.103	Anabas_testudineus
ENSCSAVG00000010927	-	100	47.706	ENSACAG00000003825	TRMT1	86	48.790	Anolis_carolinensis
ENSCSAVG00000010927	-	100	45.725	ENSANAG00000023016	TRMT1	88	45.668	Aotus_nancymaae
ENSCSAVG00000010927	-	100	48.704	ENSACLG00000010073	trmt1	88	49.815	Astatotilapia_calliptera
ENSCSAVG00000010927	-	100	49.262	ENSAMXG00000012026	trmt1	81	49.635	Astyanax_mexicanus
ENSCSAVG00000010927	-	100	45.725	ENSBTAG00000019325	TRMT1	78	45.144	Bos_taurus
ENSCSAVG00000010927	-	96	41.538	WBGene00006613	trm-1	94	41.973	Caenorhabditis_elegans
ENSCSAVG00000010927	-	100	45.251	ENSCJAG00000004566	TRMT1	84	45.570	Callithrix_jacchus
ENSCSAVG00000010927	-	100	46.211	ENSCAFG00000017070	TRMT1	86	46.209	Canis_familiaris
ENSCSAVG00000010927	-	100	45.741	ENSCAFG00020005397	TRMT1	84	45.027	Canis_lupus_dingo
ENSCSAVG00000010927	-	100	45.826	ENSCHIG00000013569	TRMT1	83	45.063	Capra_hircus
ENSCSAVG00000010927	-	98	43.705	ENSTSYG00000003207	TRMT1	84	43.705	Carlito_syrichta
ENSCSAVG00000010927	-	85	46.943	ENSCAPG00000003355	TRMT1	84	46.943	Cavia_aperea
ENSCSAVG00000010927	-	99	46.729	ENSCPOG00000011754	TRMT1	83	45.946	Cavia_porcellus
ENSCSAVG00000010927	-	100	45.539	ENSCCAG00000022263	TRMT1	88	45.487	Cebus_capucinus
ENSCSAVG00000010927	-	100	45.539	ENSCATG00000039850	TRMT1	83	45.668	Cercocebus_atys
ENSCSAVG00000010927	-	86	38.495	ENSCATG00000038220	-	83	38.627	Cercocebus_atys
ENSCSAVG00000010927	-	100	46.568	ENSCLAG00000015295	TRMT1	85	44.424	Chinchilla_lanigera
ENSCSAVG00000010927	-	88	46.934	ENSCSAG00000006500	TRMT1	89	47.780	Chlorocebus_sabaeus
ENSCSAVG00000010927	-	100	47.166	ENSCPBG00000023866	TRMT1	81	48.148	Chrysemys_picta_bellii
ENSCSAVG00000010927	-	99	78.623	ENSCING00000002884	-	98	78.623	Ciona_intestinalis
ENSCSAVG00000010927	-	100	34.694	ENSCANG00000040631	TRMT1	83	35.135	Colobus_angolensis_palliatus
ENSCSAVG00000010927	-	92	36.768	ENSCANG00000031650	-	83	35.436	Colobus_angolensis_palliatus
ENSCSAVG00000010927	-	99	46.055	ENSCGRG00001022594	Trmt1	84	46.920	Cricetulus_griseus_chok1gshd
ENSCSAVG00000010927	-	99	46.055	ENSCGRG00000017732	Trmt1	83	46.920	Cricetulus_griseus_crigri
ENSCSAVG00000010927	-	100	50.647	ENSCSEG00000001643	trmt1	84	51.961	Cynoglossus_semilaevis
ENSCSAVG00000010927	-	100	49.536	ENSCVAG00000011886	trmt1	82	50.926	Cyprinodon_variegatus
ENSCSAVG00000010927	-	100	48.288	ENSDARG00000010978	trmt1	80	49.908	Danio_rerio
ENSCSAVG00000010927	-	85	32.252	ENSDNOG00000048240	-	78	31.875	Dasypus_novemcinctus
ENSCSAVG00000010927	-	100	45.471	ENSDORG00000014298	Trmt1	83	45.307	Dipodomys_ordii
ENSCSAVG00000010927	-	95	43.605	FBgn0032430	CG6388	86	44.773	Drosophila_melanogaster
ENSCSAVG00000010927	-	95	42.043	ENSEBUG00000003449	trmt1	76	43.393	Eptatretus_burgeri
ENSCSAVG00000010927	-	100	46.950	ENSEASG00005004050	TRMT1	86	46.751	Equus_asinus_asinus
ENSCSAVG00000010927	-	100	46.950	ENSECAG00000016149	TRMT1	86	46.751	Equus_caballus
ENSCSAVG00000010927	-	100	48.346	ENSELUG00000021659	trmt1	82	48.723	Esox_lucius
ENSCSAVG00000010927	-	100	45.841	ENSFCAG00000000483	TRMT1	83	45.668	Felis_catus
ENSCSAVG00000010927	-	99	45.438	ENSFDAG00000007386	TRMT1	82	45.173	Fukomys_damarensis
ENSCSAVG00000010927	-	96	49.130	ENSFHEG00000012865	trmt1	85	50.196	Fundulus_heteroclitus
ENSCSAVG00000010927	-	100	46.654	ENSGMOG00000006564	trmt1	93	47.858	Gadus_morhua
ENSCSAVG00000010927	-	100	49.444	ENSGAFG00000011862	trmt1	84	50.741	Gambusia_affinis
ENSCSAVG00000010927	-	100	48.148	ENSGACG00000000227	trmt1	86	50.189	Gasterosteus_aculeatus
ENSCSAVG00000010927	-	100	48.080	ENSGAGG00000016432	TRMT1	80	48.980	Gopherus_agassizii
ENSCSAVG00000010927	-	100	45.911	ENSGGOG00000014007	TRMT1	83	46.029	Gorilla_gorilla
ENSCSAVG00000010927	-	100	44.112	ENSHBUG00000008821	trmt1	90	45.849	Haplochromis_burtoni
ENSCSAVG00000010927	-	100	45.539	ENSHGLG00000015972	TRMT1	83	44.604	Heterocephalus_glaber_female
ENSCSAVG00000010927	-	88	47.246	ENSHGLG00100018112	TRMT1	77	47.246	Heterocephalus_glaber_male
ENSCSAVG00000010927	-	100	47.388	ENSHCOG00000009447	trmt1	84	47.970	Hippocampus_comes
ENSCSAVG00000010927	-	100	48.540	ENSIPUG00000002899	trmt1	81	48.921	Ictalurus_punctatus
ENSCSAVG00000010927	-	100	45.656	ENSSTOG00000012531	TRMT1	84	45.668	Ictidomys_tridecemlineatus
ENSCSAVG00000010927	-	99	46.630	ENSJJAG00000017154	Trmt1	84	46.583	Jaculus_jaculus
ENSCSAVG00000010927	-	100	48.889	ENSKMAG00000011809	trmt1	90	49.442	Kryptolebias_marmoratus
ENSCSAVG00000010927	-	100	49.174	ENSLBEG00000012703	trmt1	80	50.554	Labrus_bergylta
ENSCSAVG00000010927	-	99	41.682	ENSLACG00000014585	TRMT1	89	42.623	Latimeria_chalumnae
ENSCSAVG00000010927	-	88	47.548	ENSLOCG00000006479	trmt1	82	51.316	Lepisosteus_oculatus
ENSCSAVG00000010927	-	99	45.269	ENSLAFG00000014072	TRMT1	84	45.109	Loxodonta_africana
ENSCSAVG00000010927	-	100	45.539	ENSMFAG00000033143	TRMT1	83	45.668	Macaca_fascicularis
ENSCSAVG00000010927	-	99	43.633	ENSMMUG00000001167	TRMT1	83	44.653	Macaca_mulatta
ENSCSAVG00000010927	-	100	45.353	ENSMNEG00000037867	TRMT1	83	45.487	Macaca_nemestrina
ENSCSAVG00000010927	-	100	45.539	ENSMLEG00000016142	TRMT1	83	45.668	Mandrillus_leucophaeus
ENSCSAVG00000010927	-	100	49.351	ENSMAMG00000004357	trmt1	81	50.369	Mastacembelus_armatus
ENSCSAVG00000010927	-	100	48.333	ENSMZEG00005014510	trmt1	81	49.815	Maylandia_zebra
ENSCSAVG00000010927	-	99	47.575	ENSMAUG00000011134	Trmt1	83	47.368	Mesocricetus_auratus
ENSCSAVG00000010927	-	99	46.283	ENSMICG00000000793	TRMT1	83	46.377	Microcebus_murinus
ENSCSAVG00000010927	-	99	45.073	ENSMOCG00000015895	Trmt1	83	45.668	Microtus_ochrogaster
ENSCSAVG00000010927	-	100	48.052	ENSMMOG00000011097	trmt1	88	49.814	Mola_mola
ENSCSAVG00000010927	-	100	47.810	ENSMODG00000011619	TRMT1	88	48.545	Monodelphis_domestica
ENSCSAVG00000010927	-	99	47.004	MGP_CAROLIEiJ_G0031304	Trmt1	90	48.498	Mus_caroli
ENSCSAVG00000010927	-	99	46.931	ENSMUSG00000001909	Trmt1	90	48.927	Mus_musculus
ENSCSAVG00000010927	-	99	46.931	MGP_SPRETEiJ_G0032422	Trmt1	90	48.927	Mus_spretus
ENSCSAVG00000010927	-	100	46.654	ENSMPUG00000004210	TRMT1	79	46.390	Mustela_putorius_furo
ENSCSAVG00000010927	-	100	46.026	ENSMLUG00000012809	TRMT1	82	46.209	Myotis_lucifugus
ENSCSAVG00000010927	-	99	46.097	ENSNGAG00000022486	Trmt1	83	46.014	Nannospalax_galili
ENSCSAVG00000010927	-	85	48.667	ENSNBRG00000024376	trmt1	80	48.387	Neolamprologus_brichardi
ENSCSAVG00000010927	-	74	49.458	ENSNLEG00000013019	-	77	50.000	Nomascus_leucogenys
ENSCSAVG00000010927	-	100	46.593	ENSMEUG00000013756	TRMT1	90	48.308	Notamacropus_eugenii
ENSCSAVG00000010927	-	81	63.265	ENSOPRG00000009471	-	67	63.265	Ochotona_princeps
ENSCSAVG00000010927	-	100	47.212	ENSODEG00000010323	TRMT1	83	46.751	Octodon_degus
ENSCSAVG00000010927	-	100	49.074	ENSONIG00000000400	trmt1	87	50.554	Oreochromis_niloticus
ENSCSAVG00000010927	-	88	47.679	ENSOCUG00000021934	TRMT1	89	48.312	Oryctolagus_cuniculus
ENSCSAVG00000010927	-	100	48.162	ENSORLG00000020074	trmt1	86	48.998	Oryzias_latipes
ENSCSAVG00000010927	-	100	49.632	ENSORLG00020007561	trmt1	85	50.551	Oryzias_latipes_hni
ENSCSAVG00000010927	-	100	49.449	ENSORLG00015006547	trmt1	82	50.645	Oryzias_latipes_hsok
ENSCSAVG00000010927	-	100	49.630	ENSOMEG00000019343	trmt1	81	51.220	Oryzias_melastigma
ENSCSAVG00000010927	-	100	45.741	ENSOGAG00000025576	TRMT1	86	46.043	Otolemur_garnettii
ENSCSAVG00000010927	-	100	39.444	ENSOARG00000009397	TRMT1	77	38.462	Ovis_aries
ENSCSAVG00000010927	-	100	40.370	ENSPPRG00000012117	TRMT1	83	40.901	Panthera_pardus
ENSCSAVG00000010927	-	72	48.921	ENSPTIG00000008833	TRMT1	76	49.818	Panthera_tigris_altaica
ENSCSAVG00000010927	-	98	35.240	ENSPTRG00000050421	-	82	35.240	Pan_troglodytes
ENSCSAVG00000010927	-	100	45.911	ENSPTRG00000010557	TRMT1	83	46.029	Pan_troglodytes
ENSCSAVG00000010927	-	83	39.686	ENSPANG00000034058	-	78	39.686	Papio_anubis
ENSCSAVG00000010927	-	100	45.539	ENSPANG00000009247	TRMT1	83	45.668	Papio_anubis
ENSCSAVG00000010927	-	100	48.148	ENSPKIG00000005309	trmt1	80	49.348	Paramormyrops_kingsleyae
ENSCSAVG00000010927	-	100	42.210	ENSPSIG00000008762	TRMT1	79	42.705	Pelodiscus_sinensis
ENSCSAVG00000010927	-	100	49.815	ENSPMGG00000019764	trmt1	85	51.418	Periophthalmus_magnuspinnatus
ENSCSAVG00000010927	-	99	46.753	ENSPEMG00000016247	Trmt1	82	47.005	Peromyscus_maniculatus_bairdii
ENSCSAVG00000010927	-	100	46.629	ENSPMAG00000004329	trmt1	85	48.045	Petromyzon_marinus
ENSCSAVG00000010927	-	100	47.156	ENSPCIG00000019273	TRMT1	84	48.080	Phascolarctos_cinereus
ENSCSAVG00000010927	-	100	50.185	ENSPFOG00000008527	trmt1	84	51.111	Poecilia_formosa
ENSCSAVG00000010927	-	100	49.444	ENSPLAG00000018788	trmt1	88	51.544	Poecilia_latipinna
ENSCSAVG00000010927	-	100	50.185	ENSPMEG00000013120	trmt1	84	51.111	Poecilia_mexicana
ENSCSAVG00000010927	-	100	48.889	ENSPREG00000000211	trmt1	81	50.185	Poecilia_reticulata
ENSCSAVG00000010927	-	100	45.725	ENSPPYG00000009622	TRMT1	83	45.848	Pongo_abelii
ENSCSAVG00000010927	-	100	43.680	ENSPCAG00000003698	TRMT1	84	43.682	Procavia_capensis
ENSCSAVG00000010927	-	100	45.191	ENSPCOG00000008653	TRMT1	83	46.029	Propithecus_coquereli
ENSCSAVG00000010927	-	100	46.097	ENSPVAG00000015076	TRMT1	83	45.848	Pteropus_vampyrus
ENSCSAVG00000010927	-	100	44.815	ENSPNYG00000013960	trmt1	88	46.310	Pundamilia_nyererei
ENSCSAVG00000010927	-	97	47.556	ENSPNAG00000024859	trmt1	83	47.556	Pygocentrus_nattereri
ENSCSAVG00000010927	-	99	47.388	ENSRNOG00000002914	Trmt1	85	46.995	Rattus_norvegicus
ENSCSAVG00000010927	-	92	34.004	ENSRBIG00000037505	-	84	32.661	Rhinopithecus_bieti
ENSCSAVG00000010927	-	100	45.539	ENSRBIG00000038324	TRMT1	83	45.668	Rhinopithecus_bieti
ENSCSAVG00000010927	-	100	45.539	ENSRROG00000028599	TRMT1	83	45.668	Rhinopithecus_roxellana
ENSCSAVG00000010927	-	92	33.333	ENSRROG00000031847	-	83	32.051	Rhinopithecus_roxellana
ENSCSAVG00000010927	-	95	34.019	YDR120C	-	92	34.915	Saccharomyces_cerevisiae
ENSCSAVG00000010927	-	100	46.097	ENSSBOG00000028861	TRMT1	88	46.029	Saimiri_boliviensis_boliviensis
ENSCSAVG00000010927	-	100	47.610	ENSSHAG00000014381	TRMT1	89	48.263	Sarcophilus_harrisii
ENSCSAVG00000010927	-	100	48.885	ENSSFOG00015004139	trmt1	79	49.907	Scleropages_formosus
ENSCSAVG00000010927	-	100	48.440	ENSSMAG00000021136	trmt1	81	49.817	Scophthalmus_maximus
ENSCSAVG00000010927	-	100	49.908	ENSSDUG00000012740	trmt1	80	51.107	Seriola_dumerili
ENSCSAVG00000010927	-	100	48.987	ENSSLDG00000005971	trmt1	80	50.923	Seriola_lalandi_dorsalis
ENSCSAVG00000010927	-	95	46.538	ENSSARG00000005138	TRMT1	90	46.589	Sorex_araneus
ENSCSAVG00000010927	-	95	39.729	ENSSPUG00000001084	TRMT1	89	39.923	Sphenodon_punctatus
ENSCSAVG00000010927	-	100	48.704	ENSSPAG00000007153	trmt1	89	49.815	Stegastes_partitus
ENSCSAVG00000010927	-	100	46.168	ENSSSCG00000013744	TRMT1	86	45.917	Sus_scrofa
ENSCSAVG00000010927	-	100	46.250	ENSTRUG00000010700	trmt1	81	48.250	Takifugu_rubripes
ENSCSAVG00000010927	-	100	49.536	ENSTNIG00000018808	trmt1	91	51.243	Tetraodon_nigroviridis
ENSCSAVG00000010927	-	100	45.772	ENSTTRG00000006379	TRMT1	83	45.208	Tursiops_truncatus
ENSCSAVG00000010927	-	100	45.572	ENSUAMG00000022911	TRMT1	86	45.766	Ursus_americanus
ENSCSAVG00000010927	-	100	45.203	ENSUMAG00000006027	TRMT1	86	45.848	Ursus_maritimus
ENSCSAVG00000010927	-	100	45.841	ENSVVUG00000024177	TRMT1	83	45.848	Vulpes_vulpes
ENSCSAVG00000010927	-	86	47.854	ENSXETG00000033863	TRMT1	91	49.345	Xenopus_tropicalis
ENSCSAVG00000010927	-	100	49.358	ENSXCOG00000015733	trmt1	84	50.926	Xiphophorus_couchianus
ENSCSAVG00000010927	-	100	49.177	ENSXMAG00000013823	trmt1	93	51.111	Xiphophorus_maculatus