EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000010960 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 6295 bases
Position: chrreftig_9:2925836-2932130
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000018656	zf-C2H2	PF00096.26	1e-68	1	11
ENSCSAVP00000018656	zf-C2H2	PF00096.26	1e-68	2	11
ENSCSAVP00000018656	zf-C2H2	PF00096.26	1e-68	3	11
ENSCSAVP00000018656	zf-C2H2	PF00096.26	1e-68	4	11
ENSCSAVP00000018656	zf-C2H2	PF00096.26	1e-68	5	11
ENSCSAVP00000018656	zf-C2H2	PF00096.26	1e-68	6	11
ENSCSAVP00000018656	zf-C2H2	PF00096.26	1e-68	7	11
ENSCSAVP00000018656	zf-C2H2	PF00096.26	1e-68	8	11
ENSCSAVP00000018656	zf-C2H2	PF00096.26	1e-68	9	11
ENSCSAVP00000018656	zf-C2H2	PF00096.26	1e-68	10	11
ENSCSAVP00000018656	zf-C2H2	PF00096.26	1e-68	11	11
ENSCSAVP00000018655	zf-C2H2	PF00096.26	6e-68	1	10
ENSCSAVP00000018655	zf-C2H2	PF00096.26	6e-68	2	10
ENSCSAVP00000018655	zf-C2H2	PF00096.26	6e-68	3	10
ENSCSAVP00000018655	zf-C2H2	PF00096.26	6e-68	4	10
ENSCSAVP00000018655	zf-C2H2	PF00096.26	6e-68	5	10
ENSCSAVP00000018655	zf-C2H2	PF00096.26	6e-68	6	10
ENSCSAVP00000018655	zf-C2H2	PF00096.26	6e-68	7	10
ENSCSAVP00000018655	zf-C2H2	PF00096.26	6e-68	8	10
ENSCSAVP00000018655	zf-C2H2	PF00096.26	6e-68	9	10
ENSCSAVP00000018655	zf-C2H2	PF00096.26	6e-68	10	10
ENSCSAVP00000018656	zf-met	PF12874.7	5e-33	1	8
ENSCSAVP00000018656	zf-met	PF12874.7	5e-33	2	8
ENSCSAVP00000018656	zf-met	PF12874.7	5e-33	3	8
ENSCSAVP00000018656	zf-met	PF12874.7	5e-33	4	8
ENSCSAVP00000018656	zf-met	PF12874.7	5e-33	5	8
ENSCSAVP00000018656	zf-met	PF12874.7	5e-33	6	8
ENSCSAVP00000018656	zf-met	PF12874.7	5e-33	7	8
ENSCSAVP00000018656	zf-met	PF12874.7	5e-33	8	8
ENSCSAVP00000018655	zf-met	PF12874.7	2.3e-30	1	7
ENSCSAVP00000018655	zf-met	PF12874.7	2.3e-30	2	7
ENSCSAVP00000018655	zf-met	PF12874.7	2.3e-30	3	7
ENSCSAVP00000018655	zf-met	PF12874.7	2.3e-30	4	7
ENSCSAVP00000018655	zf-met	PF12874.7	2.3e-30	5	7
ENSCSAVP00000018655	zf-met	PF12874.7	2.3e-30	6	7
ENSCSAVP00000018655	zf-met	PF12874.7	2.3e-30	7	7

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000018858	-	1320	-	ENSCSAVP00000018655	440 (aa)	-	H2ZM39
ENSCSAVT00000018859	-	1401	-	ENSCSAVP00000018656	467 (aa)	-	H2ZM40

Gene Model

Click here to download ENSCSAVG00000010960's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000010960's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000010960	-	99	33.607	ENSCSAVG00000009217	-	99	34.808
ENSCSAVG00000010960	-	99	41.667	ENSCSAVG00000009819	-	76	41.667
ENSCSAVG00000010960	-	100	54.007	ENSCSAVG00000007918	-	100	56.359
ENSCSAVG00000010960	-	100	63.131	ENSCSAVG00000004499	-	100	63.131
ENSCSAVG00000010960	-	100	48.201	ENSCSAVG00000004678	-	100	48.201
ENSCSAVG00000010960	-	99	56.410	ENSCSAVG00000003690	-	100	56.410
ENSCSAVG00000010960	-	99	39.080	ENSCSAVG00000011749	-	81	39.535
ENSCSAVG00000010960	-	100	39.456	ENSCSAVG00000009739	-	62	39.456
ENSCSAVG00000010960	-	100	58.974	ENSCSAVG00000000655	-	99	58.974
ENSCSAVG00000010960	-	100	51.449	ENSCSAVG00000006608	-	100	51.064
ENSCSAVG00000010960	-	100	50.000	ENSCSAVG00000010156	-	99	50.000
ENSCSAVG00000010960	-	100	58.333	ENSCSAVG00000000673	-	100	58.333
ENSCSAVG00000010960	-	100	59.829	ENSCSAVG00000000690	-	98	59.829
ENSCSAVG00000010960	-	100	59.310	ENSCSAVG00000001808	-	100	54.913
ENSCSAVG00000010960	-	100	48.649	ENSCSAVG00000003895	-	100	48.649
ENSCSAVG00000010960	-	100	45.833	ENSCSAVG00000009574	-	99	45.833
ENSCSAVG00000010960	-	100	44.500	ENSCSAVG00000006650	-	99	44.500
ENSCSAVG00000010960	-	93	45.652	ENSCSAVG00000009421	-	55	45.652
ENSCSAVG00000010960	-	100	54.264	ENSCSAVG00000001989	-	100	56.642
ENSCSAVG00000010960	-	100	60.526	ENSCSAVG00000004703	-	100	60.526
ENSCSAVG00000010960	-	99	45.070	ENSCSAVG00000004543	-	99	37.463
ENSCSAVG00000010960	-	100	59.524	ENSCSAVG00000004762	-	100	59.524
ENSCSAVG00000010960	-	99	44.330	ENSCSAVG00000006028	-	63	44.330
ENSCSAVG00000010960	-	100	52.941	ENSCSAVG00000002179	-	100	52.941
ENSCSAVG00000010960	-	99	42.857	ENSCSAVG00000005904	-	100	42.857
ENSCSAVG00000010960	-	99	40.881	ENSCSAVG00000001949	-	99	40.881
ENSCSAVG00000010960	-	100	38.144	ENSCSAVG00000006745	-	99	36.170
ENSCSAVG00000010960	-	100	47.991	ENSCSAVG00000007589	-	100	47.406
ENSCSAVG00000010960	-	100	54.122	ENSCSAVG00000000649	-	99	54.762
ENSCSAVG00000010960	-	99	60.526	ENSCSAVG00000000642	-	100	60.526
ENSCSAVG00000010960	-	100	54.286	ENSCSAVG00000006141	-	100	54.286
ENSCSAVG00000010960	-	99	32.895	ENSCSAVG00000006729	-	71	33.648
ENSCSAVG00000010960	-	100	62.687	ENSCSAVG00000001830	-	99	62.222
ENSCSAVG00000010960	-	98	56.028	ENSCSAVG00000001834	-	100	57.416
ENSCSAVG00000010960	-	100	57.547	ENSCSAVG00000009953	-	100	60.197
ENSCSAVG00000010960	-	100	57.292	ENSCSAVG00000000293	-	100	56.701
ENSCSAVG00000010960	-	99	35.260	ENSCSAVG00000005896	-	72	31.421
ENSCSAVG00000010960	-	93	46.296	ENSCSAVG00000011146	-	88	46.296
ENSCSAVG00000010960	-	100	62.500	ENSCSAVG00000008862	-	100	62.500
ENSCSAVG00000010960	-	100	57.143	ENSCSAVG00000009583	-	99	60.153
ENSCSAVG00000010960	-	99	36.923	ENSCSAVG00000002773	-	73	36.923
ENSCSAVG00000010960	-	100	59.259	ENSCSAVG00000000520	-	100	59.259

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000010960	-	100	47.007	ENSACAG00000008664	-	68	50.239	Anolis_carolinensis
ENSCSAVG00000010960	-	100	40.244	ENSACAG00000024956	-	78	39.286	Anolis_carolinensis
ENSCSAVG00000010960	-	100	36.667	ENSACAG00000024898	-	99	37.003	Anolis_carolinensis
ENSCSAVG00000010960	-	100	48.444	ENSAMXG00000034344	-	81	48.444	Astyanax_mexicanus
ENSCSAVG00000010960	-	100	49.164	ENSAMXG00000038536	-	90	48.585	Astyanax_mexicanus
ENSCSAVG00000010960	-	100	47.482	ENSAMXG00000010805	-	97	51.429	Astyanax_mexicanus
ENSCSAVG00000010960	-	100	52.020	ENSAMXG00000032841	-	96	52.020	Astyanax_mexicanus
ENSCSAVG00000010960	-	100	47.841	ENSAMXG00000042746	-	90	48.113	Astyanax_mexicanus
ENSCSAVG00000010960	-	95	46.491	ENSAMXG00000042784	-	92	46.491	Astyanax_mexicanus
ENSCSAVG00000010960	-	100	45.370	ENSAMXG00000040198	-	50	45.370	Astyanax_mexicanus
ENSCSAVG00000010960	-	100	43.709	ENSAMXG00000035246	-	67	43.709	Astyanax_mexicanus
ENSCSAVG00000010960	-	100	57.219	ENSAMXG00000038636	-	97	57.219	Astyanax_mexicanus
ENSCSAVG00000010960	-	100	55.556	ENSAMXG00000036233	-	94	55.556	Astyanax_mexicanus
ENSCSAVG00000010960	-	100	48.990	ENSAMXG00000038325	-	92	48.990	Astyanax_mexicanus
ENSCSAVG00000010960	-	99	50.360	ENSAMXG00000034847	-	93	50.360	Astyanax_mexicanus
ENSCSAVG00000010960	-	100	54.545	ENSAMXG00000025452	-	99	50.418	Astyanax_mexicanus
ENSCSAVG00000010960	-	99	40.000	ENSBTAG00000038322	-	81	36.877	Bos_taurus
ENSCSAVG00000010960	-	99	39.450	ENSCPBG00000013652	-	69	39.450	Chrysemys_picta_bellii
ENSCSAVG00000010960	-	100	45.312	ENSCPBG00000001526	-	90	42.593	Chrysemys_picta_bellii
ENSCSAVG00000010960	-	100	37.417	ENSCPBG00000008580	-	84	37.838	Chrysemys_picta_bellii
ENSCSAVG00000010960	-	100	41.353	ENSDNOG00000047495	-	78	40.541	Dasypus_novemcinctus
ENSCSAVG00000010960	-	99	48.635	ENSEBUG00000005264	-	74	48.635	Eptatretus_burgeri
ENSCSAVG00000010960	-	100	46.053	ENSEBUG00000015837	-	80	46.053	Eptatretus_burgeri
ENSCSAVG00000010960	-	99	43.689	ENSEBUG00000013875	-	87	43.689	Eptatretus_burgeri
ENSCSAVG00000010960	-	99	51.724	ENSEBUG00000012919	-	74	51.724	Eptatretus_burgeri
ENSCSAVG00000010960	-	100	41.841	ENSEBUG00000011694	-	97	44.159	Eptatretus_burgeri
ENSCSAVG00000010960	-	95	49.261	ENSEBUG00000011435	-	84	48.358	Eptatretus_burgeri
ENSCSAVG00000010960	-	100	42.529	ENSEBUG00000014717	-	71	41.330	Eptatretus_burgeri
ENSCSAVG00000010960	-	100	45.168	ENSEBUG00000008306	-	80	47.668	Eptatretus_burgeri
ENSCSAVG00000010960	-	100	47.174	ENSEBUG00000002075	-	76	48.199	Eptatretus_burgeri
ENSCSAVG00000010960	-	99	39.459	ENSEASG00005004469	-	84	36.979	Equus_asinus_asinus
ENSCSAVG00000010960	-	100	41.877	ENSFHEG00000004382	-	50	42.667	Fundulus_heteroclitus
ENSCSAVG00000010960	-	100	50.000	ENSGMOG00000018506	-	100	50.000	Gadus_morhua
ENSCSAVG00000010960	-	100	48.505	ENSGALG00000044069	-	58	49.415	Gallus_gallus
ENSCSAVG00000010960	-	100	43.264	ENSGALG00000055127	-	73	43.041	Gallus_gallus
ENSCSAVG00000010960	-	100	43.784	ENSGALG00000049609	-	92	43.713	Gallus_gallus
ENSCSAVG00000010960	-	99	47.143	ENSGALG00000054325	-	97	47.143	Gallus_gallus
ENSCSAVG00000010960	-	100	53.125	ENSGALG00000053507	-	84	43.137	Gallus_gallus
ENSCSAVG00000010960	-	95	48.980	ENSGALG00000046336	-	99	48.980	Gallus_gallus
ENSCSAVG00000010960	-	100	40.708	ENSGACG00000006283	-	94	38.182	Gasterosteus_aculeatus
ENSCSAVG00000010960	-	100	48.214	ENSGAGG00000011399	-	90	47.929	Gopherus_agassizii
ENSCSAVG00000010960	-	95	47.115	ENSGAGG00000018885	-	74	39.205	Gopherus_agassizii
ENSCSAVG00000010960	-	100	44.554	ENSGAGG00000011366	-	92	44.419	Gopherus_agassizii
ENSCSAVG00000010960	-	100	38.647	ENSHCOG00000018201	-	86	38.647	Hippocampus_comes
ENSCSAVG00000010960	-	98	52.252	ENSIPUG00000015468	-	92	45.477	Ictalurus_punctatus
ENSCSAVG00000010960	-	99	40.594	ENSIPUG00000012109	ZN12	54	38.182	Ictalurus_punctatus
ENSCSAVG00000010960	-	99	47.630	ENSIPUG00000021515	-	85	47.980	Ictalurus_punctatus
ENSCSAVG00000010960	-	99	37.337	ENSJJAG00000023633	Zfp672	90	39.506	Jaculus_jaculus
ENSCSAVG00000010960	-	99	38.406	ENSLACG00000009005	-	100	37.931	Latimeria_chalumnae
ENSCSAVG00000010960	-	100	54.478	ENSLACG00000022211	-	76	54.478	Latimeria_chalumnae
ENSCSAVG00000010960	-	99	36.795	ENSLACG00000005264	-	97	36.795	Latimeria_chalumnae
ENSCSAVG00000010960	-	99	40.000	ENSLOCG00000017864	-	100	40.000	Lepisosteus_oculatus
ENSCSAVG00000010960	-	100	53.125	ENSMGAG00000013362	-	100	53.125	Meleagris_gallopavo
ENSCSAVG00000010960	-	100	36.867	ENSMAUG00000009945	Zfp672	88	38.372	Mesocricetus_auratus
ENSCSAVG00000010960	-	93	48.000	ENSMMOG00000003923	-	98	48.000	Mola_mola
ENSCSAVG00000010960	-	100	37.054	ENSMODG00000010532	-	85	39.801	Monodelphis_domestica
ENSCSAVG00000010960	-	99	38.991	ENSMODG00000014052	-	99	38.991	Monodelphis_domestica
ENSCSAVG00000010960	-	100	37.251	ENSMODG00000001880	-	80	40.995	Monodelphis_domestica
ENSCSAVG00000010960	-	100	43.636	MGP_CAROLIEiJ_G0030502	-	68	39.720	Mus_caroli
ENSCSAVG00000010960	-	99	42.038	MGP_CAROLIEiJ_G0016391	Zfp672	93	41.667	Mus_caroli
ENSCSAVG00000010960	-	99	42.038	ENSMUSG00000049755	Zfp672	90	41.667	Mus_musculus
ENSCSAVG00000010960	-	100	38.211	ENSMUSG00000030823	9130019O22Rik	73	39.058	Mus_musculus
ENSCSAVG00000010960	-	99	42.038	MGP_SPRETEiJ_G0017233	Zfp672	90	40.000	Mus_spretus
ENSCSAVG00000010960	-	100	37.681	MGP_SPRETEiJ_G0031613	-	88	38.361	Mus_spretus
ENSCSAVG00000010960	-	100	51.111	ENSNGAG00000015777	Zim1	59	51.111	Nannospalax_galili
ENSCSAVG00000010960	-	100	45.178	ENSNBRG00000000708	-	92	43.151	Neolamprologus_brichardi
ENSCSAVG00000010960	-	99	49.580	ENSNBRG00000007276	-	65	48.387	Neolamprologus_brichardi
ENSCSAVG00000010960	-	93	51.163	ENSORLG00020001922	-	80	48.000	Oryzias_latipes_hni
ENSCSAVG00000010960	-	100	52.273	ENSOMEG00000001598	-	69	52.273	Oryzias_melastigma
ENSCSAVG00000010960	-	99	38.109	ENSPSIG00000006586	-	99	38.109	Pelodiscus_sinensis
ENSCSAVG00000010960	-	97	44.304	ENSPSIG00000012650	-	81	43.622	Pelodiscus_sinensis
ENSCSAVG00000010960	-	100	40.741	ENSPSIG00000005603	-	68	40.957	Pelodiscus_sinensis
ENSCSAVG00000010960	-	99	44.872	ENSPSIG00000000672	-	94	43.600	Pelodiscus_sinensis
ENSCSAVG00000010960	-	99	46.111	ENSPSIG00000013021	-	75	45.626	Pelodiscus_sinensis
ENSCSAVG00000010960	-	99	45.989	ENSPSIG00000015459	-	70	45.989	Pelodiscus_sinensis
ENSCSAVG00000010960	-	99	46.584	ENSPSIG00000003152	-	81	46.875	Pelodiscus_sinensis
ENSCSAVG00000010960	-	100	49.143	ENSPSIG00000004502	-	54	49.143	Pelodiscus_sinensis
ENSCSAVG00000010960	-	99	47.532	ENSPSIG00000016380	-	74	47.532	Pelodiscus_sinensis
ENSCSAVG00000010960	-	99	46.903	ENSPSIG00000005672	-	70	45.192	Pelodiscus_sinensis
ENSCSAVG00000010960	-	100	48.739	ENSPSIG00000006790	-	93	48.739	Pelodiscus_sinensis
ENSCSAVG00000010960	-	100	46.237	ENSPSIG00000010328	-	66	46.237	Pelodiscus_sinensis
ENSCSAVG00000010960	-	100	42.893	ENSPSIG00000010248	-	66	46.591	Pelodiscus_sinensis
ENSCSAVG00000010960	-	99	43.023	ENSPREG00000002642	-	98	40.000	Poecilia_reticulata
ENSCSAVG00000010960	-	93	51.087	ENSPNYG00000015486	-	59	51.087	Pundamilia_nyererei
ENSCSAVG00000010960	-	100	46.970	ENSPNAG00000018395	-	98	46.970	Pygocentrus_nattereri
ENSCSAVG00000010960	-	100	51.852	ENSPNAG00000000088	-	87	51.852	Pygocentrus_nattereri
ENSCSAVG00000010960	-	99	42.038	ENSRNOG00000002713	Zfp672	89	39.506	Rattus_norvegicus
ENSCSAVG00000010960	-	100	35.625	ENSSHAG00000018106	-	75	36.335	Sarcophilus_harrisii
ENSCSAVG00000010960	-	99	50.957	ENSSFOG00015019818	-	94	50.000	Scleropages_formosus
ENSCSAVG00000010960	-	100	36.066	ENSSMAG00000004252	-	83	39.355	Scophthalmus_maximus
ENSCSAVG00000010960	-	100	46.853	ENSSPUG00000010016	-	91	47.895	Sphenodon_punctatus
ENSCSAVG00000010960	-	100	52.000	ENSSPUG00000004366	-	58	48.828	Sphenodon_punctatus
ENSCSAVG00000010960	-	100	46.364	ENSSPAG00000021653	-	78	50.633	Stegastes_partitus
ENSCSAVG00000010960	-	100	46.667	ENSTGUG00000018351	-	99	46.789	Taeniopygia_guttata
ENSCSAVG00000010960	-	100	48.077	ENSTGUG00000015210	-	100	47.025	Taeniopygia_guttata
ENSCSAVG00000010960	-	100	45.455	ENSTRUG00000022066	-	98	45.455	Takifugu_rubripes
ENSCSAVG00000010960	-	100	41.646	ENSXETG00000031192	-	100	43.882	Xenopus_tropicalis
ENSCSAVG00000010960	-	100	46.429	ENSXCOG00000006553	-	88	46.429	Xiphophorus_couchianus
ENSCSAVG00000010960	-	95	47.000	ENSXMAG00000026680	-	94	47.000	Xiphophorus_maculatus