EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000011217 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 11892 bases
Position: chrreftig_16:3267776-3279667
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000019104	XRN_N	PF03159.18	1.9e-99	1	1
ENSCSAVP00000019105	XRN_N	PF03159.18	6.5e-99	1	1
ENSCSAVP00000019106	XRN_N	PF03159.18	7.3e-99	1	1
ENSCSAVP00000019107	XRN_N	PF03159.18	1.3e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000019314	-	1734	-	ENSCSAVP00000019107	460 (aa)	-	H2ZNE1
ENSCSAVT00000019312	-	2622	-	ENSCSAVP00000019105	847 (aa)	-	H2ZND9
ENSCSAVT00000019313	-	2784	-	ENSCSAVP00000019106	903 (aa)	-	H2ZNE0
ENSCSAVT00000019311	-	1547	-	ENSCSAVP00000019104	497 (aa)	-	H2ZND8

Gene Model

Click here to download ENSCSAVG00000011217's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000011217's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000011217	-	100	61.407	ENSG00000088930	XRN2	87	58.831	Homo_sapiens
ENSCSAVG00000011217	-	100	60.788	ENSAPOG00000009818	xrn2	88	58.770	Acanthochromis_polyacanthus
ENSCSAVG00000011217	-	100	61.787	ENSAMEG00000012581	XRN2	87	59.308	Ailuropoda_melanoleuca
ENSCSAVG00000011217	-	95	66.827	ENSACIG00000015047	xrn2	96	58.824	Amphilophus_citrinellus
ENSCSAVG00000011217	-	100	61.351	ENSAOCG00000023632	xrn2	88	59.044	Amphiprion_ocellaris
ENSCSAVG00000011217	-	100	61.538	ENSAPEG00000014871	xrn2	88	58.931	Amphiprion_percula
ENSCSAVG00000011217	-	93	70.120	ENSATEG00000001273	xrn2	90	58.090	Anabas_testudineus
ENSCSAVG00000011217	-	95	61.355	ENSAPLG00000013869	XRN2	79	68.059	Anas_platyrhynchos
ENSCSAVG00000011217	-	100	59.357	ENSACAG00000005565	XRN2	86	57.041	Anolis_carolinensis
ENSCSAVG00000011217	-	100	61.407	ENSANAG00000020126	XRN2	87	58.950	Aotus_nancymaae
ENSCSAVG00000011217	-	93	67.470	ENSACLG00000010522	xrn2	96	68.067	Astatotilapia_calliptera
ENSCSAVG00000011217	-	96	70.602	ENSAMXG00000018301	xrn2	85	69.767	Astyanax_mexicanus
ENSCSAVG00000011217	-	100	62.357	ENSBTAG00000011304	XRN2	87	59.308	Bos_taurus
ENSCSAVG00000011217	-	95	62.295	WBGene00006964	xrn-2	85	62.295	Caenorhabditis_elegans
ENSCSAVG00000011217	-	100	61.407	ENSCJAG00000005611	XRN2	87	58.950	Callithrix_jacchus
ENSCSAVG00000011217	-	100	61.787	ENSCAFG00000005185	XRN2	87	59.308	Canis_familiaris
ENSCSAVG00000011217	-	100	61.787	ENSCAFG00020027479	XRN2	87	59.308	Canis_lupus_dingo
ENSCSAVG00000011217	-	100	61.597	ENSCHIG00000006921	XRN2	90	57.208	Capra_hircus
ENSCSAVG00000011217	-	100	61.524	ENSTSYG00000008315	XRN2	87	58.690	Carlito_syrichta
ENSCSAVG00000011217	-	100	48.255	ENSCAPG00000010773	XRN2	85	49.684	Cavia_aperea
ENSCSAVG00000011217	-	100	61.407	ENSCPOG00000009407	XRN2	98	53.171	Cavia_porcellus
ENSCSAVG00000011217	-	100	61.407	ENSCATG00000040350	XRN2	87	58.950	Cercocebus_atys
ENSCSAVG00000011217	-	100	61.597	ENSCLAG00000013419	XRN2	87	58.592	Chinchilla_lanigera
ENSCSAVG00000011217	-	100	61.407	ENSCSAG00000011094	XRN2	87	58.950	Chlorocebus_sabaeus
ENSCSAVG00000011217	-	64	75.936	ENSCHOG00000013404	XRN2	63	75.936	Choloepus_hoffmanni
ENSCSAVG00000011217	-	100	62.500	ENSCPBG00000023533	XRN2	89	57.998	Chrysemys_picta_bellii
ENSCSAVG00000011217	-	100	82.252	ENSCING00000022336	-	100	83.035	Ciona_intestinalis
ENSCSAVG00000011217	-	100	61.407	ENSCANG00000040240	XRN2	87	58.950	Colobus_angolensis_palliatus
ENSCSAVG00000011217	-	100	61.641	ENSCGRG00001010676	Xrn2	88	58.115	Cricetulus_griseus_chok1gshd
ENSCSAVG00000011217	-	95	68.796	ENSCGRG00000006378	Xrn2	98	51.957	Cricetulus_griseus_crigri
ENSCSAVG00000011217	-	97	59.259	ENSCSEG00000005628	xrn2	99	58.600	Cynoglossus_semilaevis
ENSCSAVG00000011217	-	91	70.120	ENSCVAG00000018999	xrn2	88	69.070	Cyprinodon_variegatus
ENSCSAVG00000011217	-	96	71.807	ENSDARG00000101900	xrn2	90	70.930	Danio_rerio
ENSCSAVG00000011217	-	100	61.407	ENSDNOG00000001895	XRN2	87	58.831	Dasypus_novemcinctus
ENSCSAVG00000011217	-	100	61.217	ENSDORG00000005434	Xrn2	98	52.632	Dipodomys_ordii
ENSCSAVG00000011217	-	100	59.881	FBgn0031868	Rat1	95	51.631	Drosophila_melanogaster
ENSCSAVG00000011217	-	87	66.990	ENSETEG00000001740	XRN2	79	66.990	Echinops_telfairi
ENSCSAVG00000011217	-	100	58.011	ENSEBUG00000016136	xrn2	100	56.731	Eptatretus_burgeri
ENSCSAVG00000011217	-	100	61.787	ENSEASG00005002484	XRN2	87	59.069	Equus_asinus_asinus
ENSCSAVG00000011217	-	100	61.787	ENSECAG00000018988	XRN2	78	69.053	Equus_caballus
ENSCSAVG00000011217	-	74	76.000	ENSEEUG00000009265	XRN2	57	55.714	Erinaceus_europaeus
ENSCSAVG00000011217	-	94	72.530	ENSELUG00000000552	xrn2	90	59.247	Esox_lucius
ENSCSAVG00000011217	-	100	61.787	ENSFCAG00000007970	XRN2	87	59.308	Felis_catus
ENSCSAVG00000011217	-	100	61.905	ENSFALG00000004508	XRN2	87	59.237	Ficedula_albicollis
ENSCSAVG00000011217	-	100	61.597	ENSFDAG00000016311	XRN2	87	58.831	Fukomys_damarensis
ENSCSAVG00000011217	-	96	57.950	ENSFHEG00000013039	xrn2	93	61.667	Fundulus_heteroclitus
ENSCSAVG00000011217	-	100	64.811	ENSGMOG00000013436	xrn2	100	59.108	Gadus_morhua
ENSCSAVG00000011217	-	100	62.167	ENSGALG00000008372	XRN2	87	59.259	Gallus_gallus
ENSCSAVG00000011217	-	91	71.325	ENSGAFG00000014284	xrn2	95	66.824	Gambusia_affinis
ENSCSAVG00000011217	-	100	64.752	ENSGACG00000011870	xrn2	99	59.509	Gasterosteus_aculeatus
ENSCSAVG00000011217	-	100	62.500	ENSGAGG00000004884	XRN2	89	58.343	Gopherus_agassizii
ENSCSAVG00000011217	-	100	61.407	ENSGGOG00000013738	XRN2	87	58.950	Gorilla_gorilla
ENSCSAVG00000011217	-	94	64.026	ENSHBUG00000005077	xrn2	96	68.067	Haplochromis_burtoni
ENSCSAVG00000011217	-	100	60.266	ENSHGLG00000014831	XRN2	98	53.185	Heterocephalus_glaber_female
ENSCSAVG00000011217	-	100	60.266	ENSHGLG00100013130	XRN2	98	53.185	Heterocephalus_glaber_male
ENSCSAVG00000011217	-	97	70.233	ENSHCOG00000011994	xrn2	95	56.887	Hippocampus_comes
ENSCSAVG00000011217	-	96	70.602	ENSIPUG00000006639	xrn2	82	70.023	Ictalurus_punctatus
ENSCSAVG00000011217	-	100	61.597	ENSSTOG00000000589	XRN2	91	57.175	Ictidomys_tridecemlineatus
ENSCSAVG00000011217	-	100	61.597	ENSJJAG00000022128	Xrn2	87	58.950	Jaculus_jaculus
ENSCSAVG00000011217	-	97	63.762	ENSLBEG00000010041	xrn2	100	63.762	Labrus_bergylta
ENSCSAVG00000011217	-	93	69.821	ENSLACG00000008307	XRN2	88	68.116	Latimeria_chalumnae
ENSCSAVG00000011217	-	100	63.378	ENSLOCG00000016874	xrn2	83	71.314	Lepisosteus_oculatus
ENSCSAVG00000011217	-	100	61.597	ENSLAFG00000014624	XRN2	87	58.950	Loxodonta_africana
ENSCSAVG00000011217	-	100	61.407	ENSMFAG00000038122	XRN2	87	58.950	Macaca_fascicularis
ENSCSAVG00000011217	-	100	61.407	ENSMMUG00000011405	XRN2	87	58.950	Macaca_mulatta
ENSCSAVG00000011217	-	100	61.407	ENSMNEG00000040626	XRN2	87	58.950	Macaca_nemestrina
ENSCSAVG00000011217	-	100	61.407	ENSMLEG00000041897	XRN2	87	58.950	Mandrillus_leucophaeus
ENSCSAVG00000011217	-	100	62.835	ENSMAMG00000008633	xrn2	80	70.233	Mastacembelus_armatus
ENSCSAVG00000011217	-	93	70.843	ENSMZEG00005022362	xrn2	88	69.767	Maylandia_zebra
ENSCSAVG00000011217	-	100	61.509	ENSMGAG00000003196	XRN2	87	59.096	Meleagris_gallopavo
ENSCSAVG00000011217	-	98	68.822	ENSMAUG00000021842	Xrn2	98	54.105	Mesocricetus_auratus
ENSCSAVG00000011217	-	100	61.217	ENSMICG00000008126	XRN2	87	58.473	Microcebus_murinus
ENSCSAVG00000011217	-	96	69.880	ENSMOCG00000012588	Xrn2	98	54.211	Microtus_ochrogaster
ENSCSAVG00000011217	-	91	70.843	ENSMMOG00000017576	xrn2	92	63.976	Mola_mola
ENSCSAVG00000011217	-	100	61.217	ENSMODG00000006163	XRN2	98	54.633	Monodelphis_domestica
ENSCSAVG00000011217	-	93	71.084	ENSMALG00000011355	xrn2	89	70.000	Monopterus_albus
ENSCSAVG00000011217	-	96	69.880	MGP_CAROLIEiJ_G0024400	Xrn2	98	53.943	Mus_caroli
ENSCSAVG00000011217	-	96	69.880	ENSMUSG00000027433	Xrn2	98	53.943	Mus_musculus
ENSCSAVG00000011217	-	96	69.880	MGP_PahariEiJ_G0025843	Xrn2	98	53.943	Mus_pahari
ENSCSAVG00000011217	-	96	69.880	MGP_SPRETEiJ_G0025318	Xrn2	94	65.517	Mus_spretus
ENSCSAVG00000011217	-	100	61.787	ENSMPUG00000001198	XRN2	81	58.129	Mustela_putorius_furo
ENSCSAVG00000011217	-	100	61.714	ENSMLUG00000001536	XRN2	87	58.740	Myotis_lucifugus
ENSCSAVG00000011217	-	100	61.597	ENSNGAG00000018138	Xrn2	87	58.353	Nannospalax_galili
ENSCSAVG00000011217	-	93	71.084	ENSNBRG00000008062	xrn2	96	68.067	Neolamprologus_brichardi
ENSCSAVG00000011217	-	100	61.407	ENSNLEG00000009991	XRN2	87	58.831	Nomascus_leucogenys
ENSCSAVG00000011217	-	73	52.877	ENSMEUG00000008622	-	53	66.667	Notamacropus_eugenii
ENSCSAVG00000011217	-	97	55.750	ENSODEG00000000860	-	93	52.045	Octodon_degus
ENSCSAVG00000011217	-	100	61.597	ENSODEG00000010745	-	87	58.711	Octodon_degus
ENSCSAVG00000011217	-	93	70.602	ENSONIG00000018720	xrn2	89	57.542	Oreochromis_niloticus
ENSCSAVG00000011217	-	100	61.407	ENSOANG00000015673	XRN2	91	57.740	Ornithorhynchus_anatinus
ENSCSAVG00000011217	-	100	61.597	ENSOCUG00000013468	XRN2	87	59.189	Oryctolagus_cuniculus
ENSCSAVG00000011217	-	96	70.602	ENSORLG00000017213	xrn2	91	69.767	Oryzias_latipes
ENSCSAVG00000011217	-	96	70.602	ENSORLG00020001824	xrn2	84	69.767	Oryzias_latipes_hni
ENSCSAVG00000011217	-	96	70.361	ENSORLG00015019747	xrn2	84	69.535	Oryzias_latipes_hsok
ENSCSAVG00000011217	-	93	70.602	ENSOMEG00000019820	xrn2	80	69.767	Oryzias_melastigma
ENSCSAVG00000011217	-	100	61.290	ENSOGAG00000001068	XRN2	88	57.858	Otolemur_garnettii
ENSCSAVG00000011217	-	95	61.000	ENSOARG00000004443	XRN2	90	54.642	Ovis_aries
ENSCSAVG00000011217	-	100	61.407	ENSPPAG00000033549	XRN2	87	58.950	Pan_paniscus
ENSCSAVG00000011217	-	100	61.787	ENSPPRG00000008732	XRN2	87	59.308	Panthera_pardus
ENSCSAVG00000011217	-	92	64.744	ENSPTIG00000015683	XRN2	84	58.867	Panthera_tigris_altaica
ENSCSAVG00000011217	-	100	61.407	ENSPTRG00000013308	XRN2	87	58.950	Pan_troglodytes
ENSCSAVG00000011217	-	100	61.407	ENSPANG00000018088	XRN2	87	58.950	Papio_anubis
ENSCSAVG00000011217	-	95	70.602	ENSPKIG00000016889	xrn2	90	57.111	Paramormyrops_kingsleyae
ENSCSAVG00000011217	-	92	66.026	ENSPSIG00000014666	XRN2	99	58.665	Pelodiscus_sinensis
ENSCSAVG00000011217	-	98	69.053	ENSPEMG00000000111	Xrn2	98	52.482	Peromyscus_maniculatus_bairdii
ENSCSAVG00000011217	-	67	61.290	ENSPMAG00000002576	xrn2	100	61.584	Petromyzon_marinus
ENSCSAVG00000011217	-	91	71.084	ENSPFOG00000004182	xrn2	80	70.000	Poecilia_formosa
ENSCSAVG00000011217	-	93	71.084	ENSPLAG00000007351	xrn2	88	70.000	Poecilia_latipinna
ENSCSAVG00000011217	-	85	70.637	ENSPMEG00000011798	xrn2	79	69.415	Poecilia_mexicana
ENSCSAVG00000011217	-	91	71.325	ENSPREG00000012452	xrn2	87	70.233	Poecilia_reticulata
ENSCSAVG00000011217	-	100	61.407	ENSPPYG00000010755	XRN2	86	58.944	Pongo_abelii
ENSCSAVG00000011217	-	100	61.787	ENSPCAG00000011191	XRN2	88	54.419	Procavia_capensis
ENSCSAVG00000011217	-	100	54.373	ENSPCOG00000016468	XRN2	86	53.580	Propithecus_coquereli
ENSCSAVG00000011217	-	65	87.879	ENSPVAG00000004596	XRN2	79	52.973	Pteropus_vampyrus
ENSCSAVG00000011217	-	93	67.470	ENSPNYG00000001765	xrn2	98	56.648	Pundamilia_nyererei
ENSCSAVG00000011217	-	92	69.880	ENSPNAG00000010956	xrn2	80	69.070	Pygocentrus_nattereri
ENSCSAVG00000011217	-	100	61.407	ENSRNOG00000011785	Xrn2	87	58.473	Rattus_norvegicus
ENSCSAVG00000011217	-	100	61.407	ENSRBIG00000036193	XRN2	100	58.993	Rhinopithecus_bieti
ENSCSAVG00000011217	-	100	61.407	ENSRROG00000044400	XRN2	78	58.950	Rhinopithecus_roxellana
ENSCSAVG00000011217	-	96	45.208	YOR048C	RAT1	85	45.073	Saccharomyces_cerevisiae
ENSCSAVG00000011217	-	100	61.597	ENSSBOG00000021014	XRN2	98	53.003	Saimiri_boliviensis_boliviensis
ENSCSAVG00000011217	-	100	63.301	ENSSFOG00015001091	xrn2	94	54.861	Scleropages_formosus
ENSCSAVG00000011217	-	93	70.361	ENSSMAG00000007834	xrn2	84	68.981	Scophthalmus_maximus
ENSCSAVG00000011217	-	93	70.024	ENSSDUG00000012802	xrn2	90	68.981	Seriola_dumerili
ENSCSAVG00000011217	-	93	71.084	ENSSLDG00000021273	xrn2	88	70.000	Seriola_lalandi_dorsalis
ENSCSAVG00000011217	-	60	64.744	ENSSARG00000005859	-	55	71.429	Sorex_araneus
ENSCSAVG00000011217	-	100	62.500	ENSSPUG00000005485	XRN2	85	57.109	Sphenodon_punctatus
ENSCSAVG00000011217	-	93	70.602	ENSSPAG00000016027	xrn2	89	58.474	Stegastes_partitus
ENSCSAVG00000011217	-	100	61.977	ENSSSCG00000007109	XRN2	86	57.757	Sus_scrofa
ENSCSAVG00000011217	-	100	59.546	ENSTGUG00000007535	XRN2	87	57.551	Taeniopygia_guttata
ENSCSAVG00000011217	-	100	63.218	ENSTRUG00000015489	xrn2	82	69.767	Takifugu_rubripes
ENSCSAVG00000011217	-	100	63.550	ENSTNIG00000010712	xrn2	89	58.382	Tetraodon_nigroviridis
ENSCSAVG00000011217	-	100	61.977	ENSTBEG00000004119	XRN2	87	58.837	Tupaia_belangeri
ENSCSAVG00000011217	-	77	84.848	ENSTTRG00000009087	XRN2	80	62.500	Tursiops_truncatus
ENSCSAVG00000011217	-	100	62.023	ENSUAMG00000024634	XRN2	94	60.948	Ursus_americanus
ENSCSAVG00000011217	-	95	61.000	ENSUMAG00000004012	XRN2	82	58.744	Ursus_maritimus
ENSCSAVG00000011217	-	92	64.744	ENSVPAG00000010694	XRN2	70	66.770	Vicugna_pacos
ENSCSAVG00000011217	-	100	61.787	ENSVVUG00000012178	XRN2	87	59.308	Vulpes_vulpes
ENSCSAVG00000011217	-	100	62.209	ENSXETG00000023501	xrn2	89	57.986	Xenopus_tropicalis
ENSCSAVG00000011217	-	91	71.325	ENSXMAG00000000242	xrn2	95	67.294	Xiphophorus_maculatus