EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000011258 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 5123 bases
Position: chrreftig_64:379229-384351
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000019162	MMR_HSR1	PF01926.23	1.7e-23	1	1
ENSCSAVP00000019163	MMR_HSR1	PF01926.23	2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000019370	-	924	-	ENSCSAVP00000019163	307 (aa)	-	H2ZNJ7
ENSCSAVT00000019371	-	351	-	ENSCSAVP00000019164	117 (aa)	-	H2ZNJ8
ENSCSAVT00000019369	-	1191	-	ENSCSAVP00000019162	391 (aa)	-	H2ZNJ6

Gene Model

Click here to download ENSCSAVG00000011258's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000011258's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000011258	-	96	54.054	ENSG00000105793	GTPBP10	98	57.212	Homo_sapiens
ENSCSAVG00000011258	-	91	52.661	ENSAPOG00000024081	gtpbp10	93	53.090	Acanthochromis_polyacanthus
ENSCSAVG00000011258	-	98	51.671	ENSAMEG00000011273	GTPBP10	94	52.381	Ailuropoda_melanoleuca
ENSCSAVG00000011258	-	87	59.420	ENSACIG00000011274	gtpbp10	89	51.471	Amphilophus_citrinellus
ENSCSAVG00000011258	-	81	60.377	ENSAOCG00000013674	gtpbp10	91	50.000	Amphiprion_ocellaris
ENSCSAVG00000011258	-	91	52.528	ENSAPEG00000002756	gtpbp10	93	52.528	Amphiprion_percula
ENSCSAVG00000011258	-	87	56.338	ENSATEG00000000187	gtpbp10	93	50.562	Anabas_testudineus
ENSCSAVG00000011258	-	88	57.143	ENSAPLG00000006290	GTPBP10	93	53.541	Anas_platyrhynchos
ENSCSAVG00000011258	-	86	63.492	ENSACAG00000015854	GTPBP10	95	53.333	Anolis_carolinensis
ENSCSAVG00000011258	-	98	52.703	ENSANAG00000020267	GTPBP10	97	54.054	Aotus_nancymaae
ENSCSAVG00000011258	-	88	57.895	ENSACLG00000017490	gtpbp10	93	51.261	Astatotilapia_calliptera
ENSCSAVG00000011258	-	88	61.972	ENSAMXG00000001853	gtpbp10	83	51.603	Astyanax_mexicanus
ENSCSAVG00000011258	-	94	52.055	ENSBTAG00000032166	GTPBP10	95	50.529	Bos_taurus
ENSCSAVG00000011258	-	83	36.176	WBGene00016145	C26E6.12	84	36.176	Caenorhabditis_elegans
ENSCSAVG00000011258	-	98	52.703	ENSCJAG00000014212	GTPBP10	97	56.757	Callithrix_jacchus
ENSCSAVG00000011258	-	94	56.164	ENSCAFG00000001882	GTPBP10	89	54.108	Canis_familiaris
ENSCSAVG00000011258	-	94	56.164	ENSCAFG00020016274	GTPBP10	89	54.108	Canis_lupus_dingo
ENSCSAVG00000011258	-	94	53.425	ENSCHIG00000019551	GTPBP10	95	51.058	Capra_hircus
ENSCSAVG00000011258	-	94	54.795	ENSTSYG00000008399	GTPBP10	93	57.746	Carlito_syrichta
ENSCSAVG00000011258	-	92	50.954	ENSCAPG00000005690	GTPBP10	99	59.375	Cavia_aperea
ENSCSAVG00000011258	-	92	56.944	ENSCPOG00000003608	GTPBP10	98	57.534	Cavia_porcellus
ENSCSAVG00000011258	-	96	52.703	ENSCCAG00000025362	GTPBP10	96	55.405	Cebus_capucinus
ENSCSAVG00000011258	-	97	50.777	ENSCATG00000012178	GTPBP10	96	52.703	Cercocebus_atys
ENSCSAVG00000011258	-	95	50.532	ENSCLAG00000006695	GTPBP10	95	54.167	Chinchilla_lanigera
ENSCSAVG00000011258	-	97	50.518	ENSCSAG00000012493	GTPBP10	97	50.518	Chlorocebus_sabaeus
ENSCSAVG00000011258	-	91	51.541	ENSCHOG00000000392	GTPBP10	97	51.541	Choloepus_hoffmanni
ENSCSAVG00000011258	-	87	79.412	ENSCING00000012641	-	100	72.576	Ciona_intestinalis
ENSCSAVG00000011258	-	97	50.777	ENSCANG00000034809	GTPBP10	96	52.703	Colobus_angolensis_palliatus
ENSCSAVG00000011258	-	89	52.011	ENSCGRG00001000101	Gtpbp10	92	52.011	Cricetulus_griseus_chok1gshd
ENSCSAVG00000011258	-	89	52.011	ENSCGRG00000003724	Gtpbp10	91	52.011	Cricetulus_griseus_crigri
ENSCSAVG00000011258	-	88	61.765	ENSCSEG00000001830	gtpbp10	93	50.000	Cynoglossus_semilaevis
ENSCSAVG00000011258	-	93	51.499	ENSCVAG00000001795	gtpbp10	91	51.499	Cyprinodon_variegatus
ENSCSAVG00000011258	-	92	50.696	ENSDARG00000040300	gtpbp10	91	50.696	Danio_rerio
ENSCSAVG00000011258	-	95	56.164	ENSDNOG00000041099	GTPBP10	97	51.175	Dasypus_novemcinctus
ENSCSAVG00000011258	-	67	49.048	ENSDORG00000015471	Gtpbp10	90	61.000	Dipodomys_ordii
ENSCSAVG00000011258	-	87	47.353	FBgn0032818	CG10628	86	47.353	Drosophila_melanogaster
ENSCSAVG00000011258	-	94	53.425	ENSETEG00000010827	GTPBP10	96	48.158	Echinops_telfairi
ENSCSAVG00000011258	-	92	59.375	ENSEASG00005019630	GTPBP10	95	51.187	Equus_asinus_asinus
ENSCSAVG00000011258	-	92	59.375	ENSECAG00000017416	GTPBP10	95	51.187	Equus_caballus
ENSCSAVG00000011258	-	94	53.425	ENSEEUG00000002135	GTPBP10	95	49.206	Erinaceus_europaeus
ENSCSAVG00000011258	-	87	59.155	ENSELUG00000010662	gtpbp10	91	51.821	Esox_lucius
ENSCSAVG00000011258	-	92	59.375	ENSFCAG00000019336	GTPBP10	94	55.405	Felis_catus
ENSCSAVG00000011258	-	84	54.434	ENSFALG00000007709	GTPBP10	91	54.434	Ficedula_albicollis
ENSCSAVG00000011258	-	95	56.923	ENSFDAG00000011617	GTPBP10	94	52.406	Fukomys_damarensis
ENSCSAVG00000011258	-	92	52.368	ENSFHEG00000018435	gtpbp10	94	52.368	Fundulus_heteroclitus
ENSCSAVG00000011258	-	86	58.730	ENSGMOG00000008039	gtpbp10	95	51.453	Gadus_morhua
ENSCSAVG00000011258	-	85	65.079	ENSGALG00000009035	GTPBP10	89	53.429	Gallus_gallus
ENSCSAVG00000011258	-	91	51.404	ENSGAFG00000015123	gtpbp10	89	51.404	Gambusia_affinis
ENSCSAVG00000011258	-	91	53.737	ENSGACG00000012277	gtpbp10	97	58.750	Gasterosteus_aculeatus
ENSCSAVG00000011258	-	85	63.492	ENSGAGG00000021223	GTPBP10	95	53.463	Gopherus_agassizii
ENSCSAVG00000011258	-	96	52.703	ENSGGOG00000034985	GTPBP10	96	55.405	Gorilla_gorilla
ENSCSAVG00000011258	-	87	56.338	ENSHBUG00000004852	gtpbp10	93	51.261	Haplochromis_burtoni
ENSCSAVG00000011258	-	88	56.923	ENSHGLG00000014579	GTPBP10	95	56.164	Heterocephalus_glaber_female
ENSCSAVG00000011258	-	88	56.923	ENSHGLG00100013616	GTPBP10	91	52.877	Heterocephalus_glaber_male
ENSCSAVG00000011258	-	83	60.317	ENSHCOG00000007155	gtpbp10	96	50.272	Hippocampus_comes
ENSCSAVG00000011258	-	86	58.571	ENSIPUG00000003080	gtpbp10	89	51.275	Ictalurus_punctatus
ENSCSAVG00000011258	-	98	53.425	ENSSTOG00000008220	GTPBP10	91	56.944	Ictidomys_tridecemlineatus
ENSCSAVG00000011258	-	92	51.923	ENSJJAG00000020189	Gtpbp10	95	55.556	Jaculus_jaculus
ENSCSAVG00000011258	-	91	51.685	ENSKMAG00000003426	gtpbp10	91	51.685	Kryptolebias_marmoratus
ENSCSAVG00000011258	-	98	54.667	ENSLBEG00000006127	gtpbp10	99	49.091	Labrus_bergylta
ENSCSAVG00000011258	-	89	57.143	ENSLACG00000015237	GTPBP10	98	50.400	Latimeria_chalumnae
ENSCSAVG00000011258	-	95	56.338	ENSLOCG00000010313	gtpbp10	99	51.823	Lepisosteus_oculatus
ENSCSAVG00000011258	-	90	54.802	ENSLAFG00000009945	GTPBP10	93	54.802	Loxodonta_africana
ENSCSAVG00000011258	-	97	50.777	ENSMFAG00000020045	GTPBP10	98	54.328	Macaca_fascicularis
ENSCSAVG00000011258	-	97	50.777	ENSMMUG00000023656	GTPBP10	96	52.703	Macaca_mulatta
ENSCSAVG00000011258	-	97	50.777	ENSMNEG00000044506	GTPBP10	96	52.703	Macaca_nemestrina
ENSCSAVG00000011258	-	97	50.518	ENSMLEG00000036303	GTPBP10	97	50.518	Mandrillus_leucophaeus
ENSCSAVG00000011258	-	86	60.317	ENSMAMG00000013099	gtpbp10	93	50.278	Mastacembelus_armatus
ENSCSAVG00000011258	-	85	61.905	ENSMZEG00005022457	gtpbp10	93	51.261	Maylandia_zebra
ENSCSAVG00000011258	-	81	47.581	ENSMGAG00000008512	GTPBP10	86	54.032	Meleagris_gallopavo
ENSCSAVG00000011258	-	85	54.688	ENSMAUG00000012555	Gtpbp10	95	52.047	Mesocricetus_auratus
ENSCSAVG00000011258	-	97	51.823	ENSMICG00000010172	GTPBP10	95	53.750	Microcebus_murinus
ENSCSAVG00000011258	-	85	57.812	ENSMOCG00000017168	Gtpbp10	90	59.829	Microtus_ochrogaster
ENSCSAVG00000011258	-	86	56.604	ENSMMOG00000003534	gtpbp10	98	49.858	Mola_mola
ENSCSAVG00000011258	-	91	51.966	ENSMODG00000010453	GTPBP10	94	50.811	Monodelphis_domestica
ENSCSAVG00000011258	-	91	50.843	ENSMALG00000002814	gtpbp10	84	50.843	Monopterus_albus
ENSCSAVG00000011258	-	96	56.923	MGP_CAROLIEiJ_G0026947	Gtpbp10	96	50.000	Mus_caroli
ENSCSAVG00000011258	-	85	57.812	ENSMUSG00000040464	Gtpbp10	91	58.333	Mus_musculus
ENSCSAVG00000011258	-	88	57.812	MGP_PahariEiJ_G0021720	Gtpbp10	96	51.639	Mus_pahari
ENSCSAVG00000011258	-	85	57.812	MGP_SPRETEiJ_G0027942	-	93	52.273	Mus_spretus
ENSCSAVG00000011258	-	80	54.872	ENSMPUG00000018321	GTPBP10	96	54.872	Mustela_putorius_furo
ENSCSAVG00000011258	-	94	56.164	ENSMLUG00000007418	-	95	52.116	Myotis_lucifugus
ENSCSAVG00000011258	-	89	54.598	ENSNGAG00000013941	Gtpbp10	90	56.944	Nannospalax_galili
ENSCSAVG00000011258	-	87	56.522	ENSNBRG00000006085	gtpbp10	93	51.397	Neolamprologus_brichardi
ENSCSAVG00000011258	-	94	55.385	ENSNLEG00000015162	GTPBP10	96	54.795	Nomascus_leucogenys
ENSCSAVG00000011258	-	96	53.846	ENSMEUG00000005934	GTPBP10	93	47.934	Notamacropus_eugenii
ENSCSAVG00000011258	-	98	45.063	ENSOPRG00000012366	GTPBP10	98	45.063	Ochotona_princeps
ENSCSAVG00000011258	-	86	53.731	ENSODEG00000000522	GTPBP10	98	54.545	Octodon_degus
ENSCSAVG00000011258	-	87	56.338	ENSONIG00000006196	gtpbp10	94	51.541	Oreochromis_niloticus
ENSCSAVG00000011258	-	57	48.571	ENSOANG00000014455	-	77	48.571	Ornithorhynchus_anatinus
ENSCSAVG00000011258	-	92	52.186	ENSOCUG00000014847	GTPBP10	90	52.186	Oryctolagus_cuniculus
ENSCSAVG00000011258	-	92	50.833	ENSORLG00000009408	gtpbp10	80	50.833	Oryzias_latipes
ENSCSAVG00000011258	-	92	50.833	ENSORLG00020011083	gtpbp10	89	50.833	Oryzias_latipes_hni
ENSCSAVG00000011258	-	92	51.111	ENSORLG00015000477	gtpbp10	95	50.975	Oryzias_latipes_hsok
ENSCSAVG00000011258	-	92	51.397	ENSOMEG00000005980	gtpbp10	94	51.685	Oryzias_melastigma
ENSCSAVG00000011258	-	77	57.000	ENSOGAG00000010568	GTPBP10	83	57.000	Otolemur_garnettii
ENSCSAVG00000011258	-	95	50.923	ENSOARG00000012311	-	95	50.923	Ovis_aries
ENSCSAVG00000011258	-	96	54.054	ENSPPAG00000027408	GTPBP10	96	56.757	Pan_paniscus
ENSCSAVG00000011258	-	92	59.375	ENSPPRG00000005403	-	94	55.405	Panthera_pardus
ENSCSAVG00000011258	-	92	59.375	ENSPTIG00000003183	-	94	55.405	Panthera_tigris_altaica
ENSCSAVG00000011258	-	96	54.054	ENSPTRG00000019384	GTPBP10	96	56.757	Pan_troglodytes
ENSCSAVG00000011258	-	94	50.532	ENSPTRG00000048897	-	97	50.532	Pan_troglodytes
ENSCSAVG00000011258	-	97	50.777	ENSPANG00000005830	GTPBP10	96	52.703	Papio_anubis
ENSCSAVG00000011258	-	92	50.276	ENSPKIG00000000352	gtpbp10	92	50.276	Paramormyrops_kingsleyae
ENSCSAVG00000011258	-	87	53.372	ENSPSIG00000014996	GTPBP10	95	52.436	Pelodiscus_sinensis
ENSCSAVG00000011258	-	84	65.517	ENSPMGG00000021473	gtpbp10	88	51.906	Periophthalmus_magnuspinnatus
ENSCSAVG00000011258	-	89	53.582	ENSPEMG00000009263	Gtpbp10	90	56.338	Peromyscus_maniculatus_bairdii
ENSCSAVG00000011258	-	86	55.738	ENSPMAG00000004034	gtpbp10	88	49.148	Petromyzon_marinus
ENSCSAVG00000011258	-	54	50.568	ENSPCIG00000015146	-	83	50.568	Phascolarctos_cinereus
ENSCSAVG00000011258	-	91	51.261	ENSPFOG00000016036	gtpbp10	88	51.261	Poecilia_formosa
ENSCSAVG00000011258	-	87	56.522	ENSPLAG00000011156	gtpbp10	88	51.685	Poecilia_latipinna
ENSCSAVG00000011258	-	91	51.404	ENSPMEG00000011148	gtpbp10	88	51.404	Poecilia_mexicana
ENSCSAVG00000011258	-	91	50.980	ENSPREG00000016393	gtpbp10	88	51.124	Poecilia_reticulata
ENSCSAVG00000011258	-	96	52.055	ENSPPYG00000017830	GTPBP10	97	51.036	Pongo_abelii
ENSCSAVG00000011258	-	57	59.459	ENSPCAG00000015928	GTPBP10	58	59.459	Procavia_capensis
ENSCSAVG00000011258	-	95	51.979	ENSPCOG00000017700	GTPBP10	94	54.054	Propithecus_coquereli
ENSCSAVG00000011258	-	94	54.795	ENSPVAG00000015211	GTPBP10	95	46.825	Pteropus_vampyrus
ENSCSAVG00000011258	-	85	61.905	ENSPNYG00000006017	gtpbp10	93	51.541	Pundamilia_nyererei
ENSCSAVG00000011258	-	92	50.418	ENSPNAG00000004156	gtpbp10	90	50.418	Pygocentrus_nattereri
ENSCSAVG00000011258	-	88	57.812	ENSRNOG00000007098	Gtpbp10	96	52.473	Rattus_norvegicus
ENSCSAVG00000011258	-	97	51.295	ENSRBIG00000020878	GTPBP10	96	54.054	Rhinopithecus_bieti
ENSCSAVG00000011258	-	97	51.295	ENSRROG00000045602	GTPBP10	96	54.054	Rhinopithecus_roxellana
ENSCSAVG00000011258	-	98	52.703	ENSSBOG00000034053	GTPBP10	97	55.405	Saimiri_boliviensis_boliviensis
ENSCSAVG00000011258	-	91	51.389	ENSSHAG00000017517	GTPBP10	90	49.582	Sarcophilus_harrisii
ENSCSAVG00000011258	-	85	52.568	ENSSFOG00015011125	gtpbp10	77	55.691	Scleropages_formosus
ENSCSAVG00000011258	-	90	54.930	ENSSMAG00000017843	gtpbp10	96	51.226	Scophthalmus_maximus
ENSCSAVG00000011258	-	85	60.938	ENSSDUG00000002032	gtpbp10	93	51.397	Seriola_dumerili
ENSCSAVG00000011258	-	87	55.714	ENSSLDG00000015773	gtpbp10	93	51.117	Seriola_lalandi_dorsalis
ENSCSAVG00000011258	-	85	61.905	ENSSPUG00000014574	GTPBP10	92	52.210	Sphenodon_punctatus
ENSCSAVG00000011258	-	85	63.492	ENSSPAG00000003435	gtpbp10	93	52.809	Stegastes_partitus
ENSCSAVG00000011258	-	95	52.646	ENSSSCG00000015305	-	95	52.646	Sus_scrofa
ENSCSAVG00000011258	-	87	55.882	ENSTGUG00000001430	GTPBP10	93	52.691	Taeniopygia_guttata
ENSCSAVG00000011258	-	93	51.381	ENSTRUG00000021373	gtpbp10	95	50.820	Takifugu_rubripes
ENSCSAVG00000011258	-	89	52.632	ENSTNIG00000018351	gtpbp10	92	44.729	Tetraodon_nigroviridis
ENSCSAVG00000011258	-	96	57.812	ENSTBEG00000011567	GTPBP10	98	42.368	Tupaia_belangeri
ENSCSAVG00000011258	-	94	54.795	ENSUAMG00000006921	GTPBP10	96	52.116	Ursus_americanus
ENSCSAVG00000011258	-	94	54.795	ENSUMAG00000018594	GTPBP10	96	52.116	Ursus_maritimus
ENSCSAVG00000011258	-	92	59.375	ENSVPAG00000004945	GTPBP10	95	51.316	Vicugna_pacos
ENSCSAVG00000011258	-	77	50.654	ENSVVUG00000013675	-	92	50.654	Vulpes_vulpes
ENSCSAVG00000011258	-	98	50.667	ENSXETG00000007436	gtpbp10	91	52.078	Xenopus_tropicalis
ENSCSAVG00000011258	-	91	51.261	ENSXCOG00000019599	gtpbp10	89	51.404	Xiphophorus_couchianus
ENSCSAVG00000011258	-	91	50.980	ENSXMAG00000006881	gtpbp10	89	51.124	Xiphophorus_maculatus