EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000011266 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 6000 bases
Position: chrreftig_19:4662753-4668752
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000019188	ResIII	PF04851.15	2.7e-06	1	1
ENSCSAVP00000019187	ResIII	PF04851.15	3e-06	1	1
ENSCSAVP00000019188	DEAD	PF00270.29	4.9e-41	1	1
ENSCSAVP00000019187	DEAD	PF00270.29	1.1e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000019394	-	1781	-	ENSCSAVP00000019187	528 (aa)	-	H2ZNM1
ENSCSAVT00000019395	-	1482	-	ENSCSAVP00000019188	494 (aa)	-	H2ZNM2

Gene Model

Click here to download ENSCSAVG00000011266's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000011266's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000011266	-	73	50.000	ENSCSAVG00000003028	-	57	50.000
ENSCSAVG00000011266	-	77	30.491	ENSCSAVG00000008916	-	62	37.255

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000011266	-	99	54.455	ENSG00000136271	DDX56	100	54.427	Homo_sapiens
ENSCSAVG00000011266	-	99	61.122	ENSAPOG00000017113	ddx56	91	59.319	Acanthochromis_polyacanthus
ENSCSAVG00000011266	-	99	54.851	ENSAMEG00000017711	DDX56	91	54.851	Ailuropoda_melanoleuca
ENSCSAVG00000011266	-	99	52.988	ENSACIG00000013747	ddx56	99	59.563	Amphilophus_citrinellus
ENSCSAVG00000011266	-	99	60.922	ENSAOCG00000018059	ddx56	93	60.878	Amphiprion_ocellaris
ENSCSAVG00000011266	-	96	61.031	ENSAOCG00000015447	-	87	60.986	Amphiprion_ocellaris
ENSCSAVG00000011266	-	99	61.323	ENSAPEG00000007267	ddx56	89	60.321	Amphiprion_percula
ENSCSAVG00000011266	-	99	60.159	ENSATEG00000005279	ddx56	89	60.359	Anabas_testudineus
ENSCSAVG00000011266	-	99	59.719	ENSACLG00000020113	ddx56	89	59.400	Astatotilapia_calliptera
ENSCSAVG00000011266	-	99	59.363	ENSAMXG00000019357	ddx56	89	59.687	Astyanax_mexicanus
ENSCSAVG00000011266	-	99	54.851	ENSBTAG00000010602	DDX56	91	54.851	Bos_taurus
ENSCSAVG00000011266	-	95	40.900	WBGene00016073	C24H12.4	76	41.031	Caenorhabditis_elegans
ENSCSAVG00000011266	-	99	54.257	ENSCJAG00000012233	DDX56	91	54.257	Callithrix_jacchus
ENSCSAVG00000011266	-	81	53.086	ENSCAFG00000029295	DDX56	89	53.086	Canis_familiaris
ENSCSAVG00000011266	-	99	53.861	ENSCAFG00020019695	DDX56	93	53.861	Canis_lupus_dingo
ENSCSAVG00000011266	-	99	54.653	ENSCHIG00000014261	DDX56	91	54.653	Capra_hircus
ENSCSAVG00000011266	-	99	54.653	ENSTSYG00000008048	DDX56	91	54.653	Carlito_syrichta
ENSCSAVG00000011266	-	84	54.610	ENSCAPG00000006286	DDX56	88	54.610	Cavia_aperea
ENSCSAVG00000011266	-	99	55.248	ENSCPOG00000003359	DDX56	91	55.248	Cavia_porcellus
ENSCSAVG00000011266	-	99	53.861	ENSCCAG00000025303	DDX56	91	53.861	Cebus_capucinus
ENSCSAVG00000011266	-	99	54.653	ENSCATG00000039389	DDX56	91	54.653	Cercocebus_atys
ENSCSAVG00000011266	-	99	55.050	ENSCLAG00000007666	DDX56	91	55.050	Chinchilla_lanigera
ENSCSAVG00000011266	-	99	54.653	ENSCSAG00000015636	DDX56	91	54.653	Chlorocebus_sabaeus
ENSCSAVG00000011266	-	98	58.350	ENSCPBG00000024556	DDX56	88	58.350	Chrysemys_picta_bellii
ENSCSAVG00000011266	-	99	80.039	ENSCING00000005185	-	98	80.431	Ciona_intestinalis
ENSCSAVG00000011266	-	99	54.653	ENSCANG00000028187	DDX56	91	54.653	Colobus_angolensis_palliatus
ENSCSAVG00000011266	-	99	54.851	ENSCGRG00001019019	Ddx56	91	54.851	Cricetulus_griseus_chok1gshd
ENSCSAVG00000011266	-	99	54.851	ENSCGRG00000011870	Ddx56	91	54.851	Cricetulus_griseus_crigri
ENSCSAVG00000011266	-	99	59.719	ENSCSEG00000008368	ddx56	88	59.000	Cynoglossus_semilaevis
ENSCSAVG00000011266	-	99	60.321	ENSCVAG00000006499	ddx56	89	59.519	Cyprinodon_variegatus
ENSCSAVG00000011266	-	99	58.084	ENSDARG00000020913	ddx56	89	58.084	Danio_rerio
ENSCSAVG00000011266	-	84	54.137	ENSDNOG00000036526	DDX56	87	54.137	Dasypus_novemcinctus
ENSCSAVG00000011266	-	99	47.741	FBgn0001565	Hlc	89	47.544	Drosophila_melanogaster
ENSCSAVG00000011266	-	93	37.367	ENSETEG00000019559	-	98	37.367	Echinops_telfairi
ENSCSAVG00000011266	-	71	69.118	ENSETEG00000002969	-	63	69.565	Echinops_telfairi
ENSCSAVG00000011266	-	99	57.791	ENSEBUG00000009986	ddx56	91	58.090	Eptatretus_burgeri
ENSCSAVG00000011266	-	99	54.257	ENSEASG00005017795	DDX56	91	54.257	Equus_asinus_asinus
ENSCSAVG00000011266	-	99	54.257	ENSECAG00000019897	DDX56	91	54.257	Equus_caballus
ENSCSAVG00000011266	-	84	54.374	ENSEEUG00000004849	DDX56	88	54.374	Erinaceus_europaeus
ENSCSAVG00000011266	-	99	59.127	ENSELUG00000004150	ddx56	89	59.800	Esox_lucius
ENSCSAVG00000011266	-	99	54.257	ENSFCAG00000010261	DDX56	91	54.257	Felis_catus
ENSCSAVG00000011266	-	99	54.851	ENSFDAG00000007128	DDX56	91	54.851	Fukomys_damarensis
ENSCSAVG00000011266	-	99	59.000	ENSFHEG00000018008	ddx56	95	59.000	Fundulus_heteroclitus
ENSCSAVG00000011266	-	99	58.600	ENSGAFG00000006906	ddx56	93	58.600	Gambusia_affinis
ENSCSAVG00000011266	-	98	58.350	ENSGAGG00000006789	DDX56	87	58.350	Gopherus_agassizii
ENSCSAVG00000011266	-	99	54.455	ENSGGOG00000012031	DDX56	91	54.455	Gorilla_gorilla
ENSCSAVG00000011266	-	99	56.313	ENSHBUG00000015246	ddx56	89	56.000	Haplochromis_burtoni
ENSCSAVG00000011266	-	99	55.644	ENSHGLG00000017271	DDX56	91	55.644	Heterocephalus_glaber_female
ENSCSAVG00000011266	-	99	55.644	ENSHGLG00100015731	DDX56	91	55.644	Heterocephalus_glaber_male
ENSCSAVG00000011266	-	99	59.600	ENSHCOG00000001685	ddx56	89	58.918	Hippocampus_comes
ENSCSAVG00000011266	-	98	58.367	ENSIPUG00000006602	ddx56	90	57.170	Ictalurus_punctatus
ENSCSAVG00000011266	-	99	54.851	ENSSTOG00000000464	DDX56	91	54.851	Ictidomys_tridecemlineatus
ENSCSAVG00000011266	-	99	54.653	ENSJJAG00000014269	Ddx56	92	54.653	Jaculus_jaculus
ENSCSAVG00000011266	-	98	60.159	ENSKMAG00000016611	ddx56	95	60.359	Kryptolebias_marmoratus
ENSCSAVG00000011266	-	99	59.245	ENSLBEG00000026281	ddx56	90	59.588	Labrus_bergylta
ENSCSAVG00000011266	-	98	60.161	ENSLACG00000015551	DDX56	88	60.636	Latimeria_chalumnae
ENSCSAVG00000011266	-	99	59.921	ENSLOCG00000015185	ddx56	88	59.883	Lepisosteus_oculatus
ENSCSAVG00000011266	-	99	55.179	ENSLAFG00000018206	DDX56	91	54.951	Loxodonta_africana
ENSCSAVG00000011266	-	99	54.653	ENSMFAG00000041001	DDX56	91	54.653	Macaca_fascicularis
ENSCSAVG00000011266	-	99	54.653	ENSMMUG00000002645	DDX56	91	54.653	Macaca_mulatta
ENSCSAVG00000011266	-	99	54.653	ENSMNEG00000028492	DDX56	91	54.653	Macaca_nemestrina
ENSCSAVG00000011266	-	99	54.851	ENSMLEG00000043591	DDX56	91	54.851	Mandrillus_leucophaeus
ENSCSAVG00000011266	-	99	60.120	ENSMAMG00000007776	ddx56	88	60.120	Mastacembelus_armatus
ENSCSAVG00000011266	-	99	59.719	ENSMZEG00005009813	ddx56	89	59.400	Maylandia_zebra
ENSCSAVG00000011266	-	99	54.851	ENSMICG00000005550	DDX56	91	54.851	Microcebus_murinus
ENSCSAVG00000011266	-	99	54.059	ENSMOCG00000016782	Ddx56	91	54.059	Microtus_ochrogaster
ENSCSAVG00000011266	-	99	61.078	ENSMMOG00000009654	ddx56	95	61.277	Mola_mola
ENSCSAVG00000011266	-	99	51.102	ENSMODG00000016137	DDX56	89	51.102	Monodelphis_domestica
ENSCSAVG00000011266	-	74	56.992	ENSMALG00000016910	ddx56	99	56.728	Monopterus_albus
ENSCSAVG00000011266	-	99	54.059	MGP_CAROLIEiJ_G0016069	Ddx56	99	54.472	Mus_caroli
ENSCSAVG00000011266	-	99	54.348	ENSMUSG00000004393	Ddx56	99	54.878	Mus_musculus
ENSCSAVG00000011266	-	99	54.743	MGP_PahariEiJ_G0016822	Ddx56	100	55.285	Mus_pahari
ENSCSAVG00000011266	-	99	54.348	MGP_SPRETEiJ_G0016911	Ddx56	99	54.878	Mus_spretus
ENSCSAVG00000011266	-	99	54.257	ENSMPUG00000018196	DDX56	80	54.257	Mustela_putorius_furo
ENSCSAVG00000011266	-	99	53.663	ENSMLUG00000003509	DDX56	91	53.663	Myotis_lucifugus
ENSCSAVG00000011266	-	99	55.644	ENSNGAG00000018785	Ddx56	91	55.644	Nannospalax_galili
ENSCSAVG00000011266	-	99	56.112	ENSNBRG00000002656	ddx56	89	55.912	Neolamprologus_brichardi
ENSCSAVG00000011266	-	99	54.653	ENSNLEG00000003816	DDX56	91	54.653	Nomascus_leucogenys
ENSCSAVG00000011266	-	99	50.495	ENSMEUG00000006788	DDX56	100	50.495	Notamacropus_eugenii
ENSCSAVG00000011266	-	99	53.069	ENSOPRG00000000292	-	91	52.673	Ochotona_princeps
ENSCSAVG00000011266	-	75	54.427	ENSODEG00000014807	DDX56	100	54.427	Octodon_degus
ENSCSAVG00000011266	-	99	58.918	ENSONIG00000011509	ddx56	90	58.918	Oreochromis_niloticus
ENSCSAVG00000011266	-	80	47.761	ENSOANG00000015987	-	95	46.301	Ornithorhynchus_anatinus
ENSCSAVG00000011266	-	56	55.036	ENSOANG00000010592	-	99	54.064	Ornithorhynchus_anatinus
ENSCSAVG00000011266	-	96	47.239	ENSOANG00000006320	-	70	61.279	Ornithorhynchus_anatinus
ENSCSAVG00000011266	-	99	54.059	ENSOCUG00000022918	DDX56	91	54.059	Oryctolagus_cuniculus
ENSCSAVG00000011266	-	99	60.120	ENSORLG00000001434	ddx56	89	59.519	Oryzias_latipes
ENSCSAVG00000011266	-	99	60.120	ENSORLG00020015718	ddx56	87	57.915	Oryzias_latipes_hni
ENSCSAVG00000011266	-	99	60.120	ENSORLG00015003004	ddx56	85	59.519	Oryzias_latipes_hsok
ENSCSAVG00000011266	-	99	60.321	ENSOMEG00000022072	ddx56	88	59.719	Oryzias_melastigma
ENSCSAVG00000011266	-	99	54.653	ENSOGAG00000009981	DDX56	91	54.653	Otolemur_garnettii
ENSCSAVG00000011266	-	99	54.851	ENSOARG00000015240	DDX56	91	54.851	Ovis_aries
ENSCSAVG00000011266	-	99	52.140	ENSPPAG00000029147	DDX56	91	52.140	Pan_paniscus
ENSCSAVG00000011266	-	93	45.877	ENSPPAG00000031263	-	85	45.455	Pan_paniscus
ENSCSAVG00000011266	-	99	54.257	ENSPPRG00000014594	DDX56	91	54.257	Panthera_pardus
ENSCSAVG00000011266	-	84	52.955	ENSPTIG00000019500	DDX56	89	46.869	Panthera_tigris_altaica
ENSCSAVG00000011266	-	93	45.378	ENSPTRG00000052765	-	90	44.969	Pan_troglodytes
ENSCSAVG00000011266	-	99	54.455	ENSPTRG00000019147	DDX56	91	54.455	Pan_troglodytes
ENSCSAVG00000011266	-	99	54.653	ENSPANG00000002446	DDX56	91	54.653	Papio_anubis
ENSCSAVG00000011266	-	99	59.519	ENSPKIG00000018998	ddx56	88	59.519	Paramormyrops_kingsleyae
ENSCSAVG00000011266	-	99	60.080	ENSPMGG00000017421	ddx56	92	59.570	Periophthalmus_magnuspinnatus
ENSCSAVG00000011266	-	99	56.832	ENSPCIG00000009336	DDX56	90	56.832	Phascolarctos_cinereus
ENSCSAVG00000011266	-	99	60.878	ENSPFOG00000018658	ddx56	89	60.600	Poecilia_formosa
ENSCSAVG00000011266	-	99	60.878	ENSPLAG00000019208	ddx56	93	60.321	Poecilia_latipinna
ENSCSAVG00000011266	-	99	60.878	ENSPMEG00000001775	ddx56	93	60.600	Poecilia_mexicana
ENSCSAVG00000011266	-	99	61.200	ENSPREG00000015142	ddx56	90	60.721	Poecilia_reticulata
ENSCSAVG00000011266	-	99	54.653	ENSPPYG00000017591	DDX56	91	54.653	Pongo_abelii
ENSCSAVG00000011266	-	95	55.670	ENSPCAG00000011499	DDX56	90	55.670	Procavia_capensis
ENSCSAVG00000011266	-	99	54.653	ENSPCOG00000024864	DDX56	91	54.653	Propithecus_coquereli
ENSCSAVG00000011266	-	87	54.419	ENSPVAG00000000791	DDX56	79	56.872	Pteropus_vampyrus
ENSCSAVG00000011266	-	99	59.519	ENSPNYG00000019212	ddx56	89	59.200	Pundamilia_nyererei
ENSCSAVG00000011266	-	99	60.721	ENSPNAG00000025446	ddx56	93	60.721	Pygocentrus_nattereri
ENSCSAVG00000011266	-	99	54.150	ENSRNOG00000004670	Ddx56	91	53.861	Rattus_norvegicus
ENSCSAVG00000011266	-	99	54.851	ENSRBIG00000030140	DDX56	91	54.851	Rhinopithecus_bieti
ENSCSAVG00000011266	-	99	54.653	ENSRROG00000044428	DDX56	91	54.653	Rhinopithecus_roxellana
ENSCSAVG00000011266	-	99	44.403	YLR276C	-	90	44.403	Saccharomyces_cerevisiae
ENSCSAVG00000011266	-	99	54.653	ENSSBOG00000034339	DDX56	91	54.653	Saimiri_boliviensis_boliviensis
ENSCSAVG00000011266	-	84	56.028	ENSSHAG00000016615	DDX56	88	55.149	Sarcophilus_harrisii
ENSCSAVG00000011266	-	99	59.319	ENSSFOG00015012795	ddx56	88	58.918	Scleropages_formosus
ENSCSAVG00000011266	-	99	60.400	ENSSMAG00000011280	ddx56	92	60.317	Scophthalmus_maximus
ENSCSAVG00000011266	-	99	60.714	ENSSDUG00000023597	ddx56	92	58.032	Seriola_dumerili
ENSCSAVG00000011266	-	99	60.516	ENSSLDG00000018369	ddx56	89	60.516	Seriola_lalandi_dorsalis
ENSCSAVG00000011266	-	77	68.852	ENSSARG00000014363	DDX56	69	68.182	Sorex_araneus
ENSCSAVG00000011266	-	99	60.878	ENSSPUG00000000784	DDX56	86	60.878	Sphenodon_punctatus
ENSCSAVG00000011266	-	99	60.721	ENSSPAG00000009392	ddx56	92	60.521	Stegastes_partitus
ENSCSAVG00000011266	-	99	53.861	ENSSSCG00000016745	DDX56	91	54.257	Sus_scrofa
ENSCSAVG00000011266	-	99	59.281	ENSTRUG00000018623	ddx56	90	58.918	Takifugu_rubripes
ENSCSAVG00000011266	-	99	58.847	ENSTNIG00000013593	ddx56	89	58.847	Tetraodon_nigroviridis
ENSCSAVG00000011266	-	99	54.257	ENSTBEG00000007119	DDX56	91	54.257	Tupaia_belangeri
ENSCSAVG00000011266	-	84	54.374	ENSTTRG00000010552	DDX56	88	54.374	Tursiops_truncatus
ENSCSAVG00000011266	-	99	54.851	ENSUAMG00000014194	DDX56	91	54.851	Ursus_americanus
ENSCSAVG00000011266	-	99	54.851	ENSUMAG00000009666	DDX56	91	54.851	Ursus_maritimus
ENSCSAVG00000011266	-	99	53.465	ENSVVUG00000011905	DDX56	91	53.465	Vulpes_vulpes
ENSCSAVG00000011266	-	98	57.200	ENSXETG00000019000	ddx56	89	57.200	Xenopus_tropicalis
ENSCSAVG00000011266	-	99	60.321	ENSXCOG00000017413	ddx56	92	60.120	Xiphophorus_couchianus
ENSCSAVG00000011266	-	99	60.000	ENSXMAG00000018749	ddx56	92	60.200	Xiphophorus_maculatus