EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000011288 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 12119 bases
Position: chrreftig_172:33993-46111
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000019220	SRP72	PF08492.12	3.4e-11	1	1
ENSCSAVP00000019222	SRP72	PF08492.12	6.3e-11	1	1
ENSCSAVP00000019221	SRP72	PF08492.12	7.2e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000019428	-	2199	-	ENSCSAVP00000019220	689 (aa)	-	H2ZNQ4
ENSCSAVT00000019429	-	2044	-	ENSCSAVP00000019221	679 (aa)	-	H2ZNQ5
ENSCSAVT00000019430	-	1850	-	ENSCSAVP00000019222	562 (aa)	-	H2ZNQ6

Gene Model

Click here to download ENSCSAVG00000011288's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000011288's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000011288	-	99	40.541	ENSG00000174780	SRP72	99	38.760	Homo_sapiens
ENSCSAVG00000011288	-	99	40.000	ENSAPOG00000019438	srp72	89	40.000	Acanthochromis_polyacanthus
ENSCSAVG00000011288	-	92	42.410	ENSAMEG00000008469	SRP72	93	41.935	Ailuropoda_melanoleuca
ENSCSAVG00000011288	-	97	42.222	ENSACIG00000000488	srp72	93	42.527	Amphilophus_citrinellus
ENSCSAVG00000011288	-	99	41.116	ENSAOCG00000011256	srp72	93	41.796	Amphiprion_ocellaris
ENSCSAVG00000011288	-	99	40.698	ENSAPEG00000001512	srp72	93	41.602	Amphiprion_percula
ENSCSAVG00000011288	-	99	38.929	ENSATEG00000006781	srp72	99	42.180	Anabas_testudineus
ENSCSAVG00000011288	-	92	41.745	ENSAPLG00000008751	SRP72	92	41.900	Anas_platyrhynchos
ENSCSAVG00000011288	-	92	42.812	ENSACAG00000002381	SRP72	92	42.284	Anolis_carolinensis
ENSCSAVG00000011288	-	99	39.820	ENSANAG00000020836	-	93	41.437	Aotus_nancymaae
ENSCSAVG00000011288	-	97	41.568	ENSACLG00000014617	srp72	93	41.602	Astatotilapia_calliptera
ENSCSAVG00000011288	-	95	42.057	ENSAMXG00000004011	srp72	97	41.203	Astyanax_mexicanus
ENSCSAVG00000011288	-	93	41.886	ENSBTAG00000010593	SRP72	94	41.896	Bos_taurus
ENSCSAVG00000011288	-	97	33.178	WBGene00017245	srpa-72	96	30.971	Caenorhabditis_elegans
ENSCSAVG00000011288	-	99	39.640	ENSCJAG00000017998	SRP72	94	41.284	Callithrix_jacchus
ENSCSAVG00000011288	-	93	42.081	ENSCAFG00000002244	SRP72	94	42.089	Canis_familiaris
ENSCSAVG00000011288	-	99	40.288	ENSCAFG00020027338	SRP72	92	42.089	Canis_lupus_dingo
ENSCSAVG00000011288	-	92	41.240	ENSCHIG00000021465	SRP72	94	40.791	Capra_hircus
ENSCSAVG00000011288	-	99	40.360	ENSTSYG00000010571	-	91	41.966	Carlito_syrichta
ENSCSAVG00000011288	-	79	37.220	ENSCAPG00000016668	SRP72	82	37.444	Cavia_aperea
ENSCSAVG00000011288	-	99	40.360	ENSCPOG00000000218	SRP72	94	41.437	Cavia_porcellus
ENSCSAVG00000011288	-	96	39.910	ENSCCAG00000030830	-	94	40.520	Cebus_capucinus
ENSCSAVG00000011288	-	93	41.796	ENSCCAG00000030683	-	93	41.564	Cebus_capucinus
ENSCSAVG00000011288	-	96	34.389	ENSCATG00000045359	-	88	34.839	Cercocebus_atys
ENSCSAVG00000011288	-	99	40.360	ENSCATG00000008072	SRP72	94	41.590	Cercocebus_atys
ENSCSAVG00000011288	-	99	40.108	ENSCLAG00000003571	SRP72	94	41.437	Chinchilla_lanigera
ENSCSAVG00000011288	-	96	40.480	ENSCSAG00000005079	SRP72	94	41.167	Chlorocebus_sabaeus
ENSCSAVG00000011288	-	84	40.741	ENSCHOG00000013240	SRP72	83	40.000	Choloepus_hoffmanni
ENSCSAVG00000011288	-	92	42.097	ENSCPBG00000015015	SRP72	93	41.821	Chrysemys_picta_bellii
ENSCSAVG00000011288	-	97	76.113	ENSCING00000002417	-	97	77.596	Ciona_intestinalis
ENSCSAVG00000011288	-	99	40.360	ENSCANG00000041709	SRP72	94	41.590	Colobus_angolensis_palliatus
ENSCSAVG00000011288	-	86	38.576	ENSCANG00000037920	-	86	41.250	Colobus_angolensis_palliatus
ENSCSAVG00000011288	-	99	41.074	ENSCGRG00001013548	Srp72	94	41.590	Cricetulus_griseus_chok1gshd
ENSCSAVG00000011288	-	94	41.743	ENSCGRG00000003013	Srp72	92	42.390	Cricetulus_griseus_crigri
ENSCSAVG00000011288	-	98	42.229	ENSCSEG00000003616	srp72	93	42.284	Cynoglossus_semilaevis
ENSCSAVG00000011288	-	89	43.204	ENSCVAG00000001520	srp72	98	42.995	Cyprinodon_variegatus
ENSCSAVG00000011288	-	91	45.324	ENSDARG00000014139	srp72	89	45.324	Danio_rerio
ENSCSAVG00000011288	-	97	39.853	ENSDNOG00000039012	SRP72	78	40.549	Dasypus_novemcinctus
ENSCSAVG00000011288	-	96	41.053	ENSDORG00000000171	Srp72	92	41.745	Dipodomys_ordii
ENSCSAVG00000011288	-	98	31.877	FBgn0038810	Srp72	95	37.188	Drosophila_melanogaster
ENSCSAVG00000011288	-	96	41.053	ENSETEG00000005191	SRP72	92	41.589	Echinops_telfairi
ENSCSAVG00000011288	-	86	30.986	ENSEBUG00000003696	srp72	93	44.355	Eptatretus_burgeri
ENSCSAVG00000011288	-	96	41.529	ENSEASG00005017747	SRP72	94	42.243	Equus_asinus_asinus
ENSCSAVG00000011288	-	96	41.529	ENSECAG00000006920	SRP72	94	42.243	Equus_caballus
ENSCSAVG00000011288	-	97	41.124	ENSELUG00000022415	srp72	95	40.752	Esox_lucius
ENSCSAVG00000011288	-	99	40.288	ENSFCAG00000027600	SRP72	92	42.212	Felis_catus
ENSCSAVG00000011288	-	96	42.042	ENSFALG00000006713	SRP72	93	42.638	Ficedula_albicollis
ENSCSAVG00000011288	-	97	41.298	ENSFDAG00000002014	-	94	41.896	Fukomys_damarensis
ENSCSAVG00000011288	-	91	30.156	ENSFDAG00000009793	-	84	30.233	Fukomys_damarensis
ENSCSAVG00000011288	-	97	41.220	ENSFHEG00000017652	srp72	85	42.072	Fundulus_heteroclitus
ENSCSAVG00000011288	-	96	41.353	ENSGMOG00000005986	srp72	96	41.265	Gadus_morhua
ENSCSAVG00000011288	-	92	42.679	ENSGALG00000011403	SRP72	93	42.769	Gallus_gallus
ENSCSAVG00000011288	-	98	41.543	ENSGAFG00000017762	srp72	92	42.700	Gambusia_affinis
ENSCSAVG00000011288	-	92	41.667	ENSGACG00000016749	srp72	93	41.176	Gasterosteus_aculeatus
ENSCSAVG00000011288	-	86	43.662	ENSGAGG00000024611	SRP72	91	42.732	Gopherus_agassizii
ENSCSAVG00000011288	-	99	40.360	ENSGGOG00000013234	-	94	41.590	Gorilla_gorilla
ENSCSAVG00000011288	-	97	41.568	ENSHBUG00000020723	srp72	93	41.602	Haplochromis_burtoni
ENSCSAVG00000011288	-	97	41.003	ENSHGLG00000009791	SRP72	94	41.590	Heterocephalus_glaber_female
ENSCSAVG00000011288	-	53	31.229	ENSHGLG00000003496	-	94	30.114	Heterocephalus_glaber_female
ENSCSAVG00000011288	-	93	34.783	ENSHGLG00000018597	-	89	34.790	Heterocephalus_glaber_female
ENSCSAVG00000011288	-	98	32.914	ENSHGLG00000010633	-	92	30.062	Heterocephalus_glaber_female
ENSCSAVG00000011288	-	96	39.367	ENSHGLG00000005029	-	92	39.906	Heterocephalus_glaber_female
ENSCSAVG00000011288	-	99	33.692	ENSHGLG00000003950	-	90	39.171	Heterocephalus_glaber_female
ENSCSAVG00000011288	-	97	41.003	ENSHGLG00100009021	SRP72	94	41.590	Heterocephalus_glaber_male
ENSCSAVG00000011288	-	99	33.513	ENSHGLG00100017133	-	90	38.710	Heterocephalus_glaber_male
ENSCSAVG00000011288	-	99	34.526	ENSHGLG00100009346	-	90	34.168	Heterocephalus_glaber_male
ENSCSAVG00000011288	-	96	39.367	ENSHGLG00100011236	-	92	39.906	Heterocephalus_glaber_male
ENSCSAVG00000011288	-	98	41.826	ENSHCOG00000013760	srp72	97	41.829	Hippocampus_comes
ENSCSAVG00000011288	-	96	40.923	ENSIPUG00000000210	srp72	97	40.448	Ictalurus_punctatus
ENSCSAVG00000011288	-	99	40.360	ENSSTOG00000007305	SRP72	94	41.590	Ictidomys_tridecemlineatus
ENSCSAVG00000011288	-	98	41.123	ENSJJAG00000018324	Srp72	92	42.016	Jaculus_jaculus
ENSCSAVG00000011288	-	99	41.884	ENSKMAG00000003776	srp72	93	42.415	Kryptolebias_marmoratus
ENSCSAVG00000011288	-	98	40.708	ENSLOCG00000002628	srp72	93	40.958	Lepisosteus_oculatus
ENSCSAVG00000011288	-	96	41.229	ENSLAFG00000018307	SRP72	94	41.935	Loxodonta_africana
ENSCSAVG00000011288	-	99	40.248	ENSMFAG00000031065	SRP72	94	41.590	Macaca_fascicularis
ENSCSAVG00000011288	-	96	34.441	ENSMFAG00000037164	-	96	34.251	Macaca_fascicularis
ENSCSAVG00000011288	-	99	40.248	ENSMMUG00000016368	SRP72	93	41.590	Macaca_mulatta
ENSCSAVG00000011288	-	87	32.348	ENSMMUG00000021262	-	90	32.668	Macaca_mulatta
ENSCSAVG00000011288	-	99	40.248	ENSMNEG00000038065	-	94	41.590	Macaca_nemestrina
ENSCSAVG00000011288	-	93	40.741	ENSMLEG00000030140	-	93	40.520	Mandrillus_leucophaeus
ENSCSAVG00000011288	-	97	43.155	ENSMAMG00000014989	srp72	83	42.724	Mastacembelus_armatus
ENSCSAVG00000011288	-	97	41.568	ENSMZEG00005003325	srp72	93	41.602	Maylandia_zebra
ENSCSAVG00000011288	-	92	37.529	ENSMGAG00000008567	SRP72	93	41.080	Meleagris_gallopavo
ENSCSAVG00000011288	-	98	41.520	ENSMAUG00000001237	Srp72	92	42.056	Mesocricetus_auratus
ENSCSAVG00000011288	-	93	41.667	ENSMICG00000008507	-	93	41.437	Microcebus_murinus
ENSCSAVG00000011288	-	99	40.929	ENSMOCG00000020309	Srp72	94	41.437	Microtus_ochrogaster
ENSCSAVG00000011288	-	92	41.406	ENSMMOG00000002627	srp72	93	41.022	Mola_mola
ENSCSAVG00000011288	-	92	42.567	ENSMODG00000020697	SRP72	92	41.900	Monodelphis_domestica
ENSCSAVG00000011288	-	99	41.410	ENSMALG00000003747	srp72	93	41.331	Monopterus_albus
ENSCSAVG00000011288	-	99	40.929	MGP_CAROLIEiJ_G0027323	Srp72	94	41.437	Mus_caroli
ENSCSAVG00000011288	-	99	40.929	ENSMUSG00000036323	Srp72	94	41.437	Mus_musculus
ENSCSAVG00000011288	-	99	41.074	MGP_PahariEiJ_G0017103	Srp72	92	41.900	Mus_pahari
ENSCSAVG00000011288	-	99	40.929	MGP_SPRETEiJ_G0028317	Srp72	94	41.437	Mus_spretus
ENSCSAVG00000011288	-	92	42.410	ENSMPUG00000004828	SRP72	94	42.243	Mustela_putorius_furo
ENSCSAVG00000011288	-	92	42.031	ENSMLUG00000007344	SRP72	92	41.835	Myotis_lucifugus
ENSCSAVG00000011288	-	100	41.320	ENSNGAG00000012595	Srp72	94	41.896	Nannospalax_galili
ENSCSAVG00000011288	-	97	41.037	ENSNBRG00000014492	srp72	93	40.062	Neolamprologus_brichardi
ENSCSAVG00000011288	-	99	36.577	ENSNLEG00000008806	-	93	39.062	Nomascus_leucogenys
ENSCSAVG00000011288	-	85	45.652	ENSMEUG00000005164	SRP72	82	52.941	Notamacropus_eugenii
ENSCSAVG00000011288	-	96	41.843	ENSOPRG00000012521	SRP72	92	41.950	Ochotona_princeps
ENSCSAVG00000011288	-	92	41.369	ENSODEG00000012214	SRP72	94	41.069	Octodon_degus
ENSCSAVG00000011288	-	97	41.420	ENSONIG00000001446	srp72	93	41.448	Oreochromis_niloticus
ENSCSAVG00000011288	-	81	50.667	ENSOANG00000008562	SRP72	80	53.731	Ornithorhynchus_anatinus
ENSCSAVG00000011288	-	93	41.731	ENSOCUG00000012226	SRP72	94	41.743	Oryctolagus_cuniculus
ENSCSAVG00000011288	-	99	39.716	ENSORLG00000020418	srp72	94	41.512	Oryzias_latipes
ENSCSAVG00000011288	-	98	40.413	ENSORLG00020009138	srp72	91	41.358	Oryzias_latipes_hni
ENSCSAVG00000011288	-	98	40.265	ENSORLG00015018251	srp72	94	41.204	Oryzias_latipes_hsok
ENSCSAVG00000011288	-	94	41.731	ENSOMEG00000022008	srp72	94	41.667	Oryzias_melastigma
ENSCSAVG00000011288	-	94	41.832	ENSOGAG00000003578	SRP72	94	41.896	Otolemur_garnettii
ENSCSAVG00000011288	-	93	42.081	ENSOARG00000004329	SRP72	94	42.089	Ovis_aries
ENSCSAVG00000011288	-	88	33.058	ENSPPAG00000032490	-	91	32.799	Pan_paniscus
ENSCSAVG00000011288	-	96	41.353	ENSPPAG00000042265	SRP72	94	41.743	Pan_paniscus
ENSCSAVG00000011288	-	97	31.953	ENSPPAG00000011428	-	86	36.464	Pan_paniscus
ENSCSAVG00000011288	-	98	40.580	ENSPPRG00000015991	SRP72	94	42.089	Panthera_pardus
ENSCSAVG00000011288	-	98	40.580	ENSPTIG00000018786	SRP72	94	42.089	Panthera_tigris_altaica
ENSCSAVG00000011288	-	88	33.223	ENSPTRG00000043609	-	91	32.860	Pan_troglodytes
ENSCSAVG00000011288	-	99	40.541	ENSPTRG00000048466	-	94	41.743	Pan_troglodytes
ENSCSAVG00000011288	-	97	33.135	ENSPTRG00000048100	-	86	38.674	Pan_troglodytes
ENSCSAVG00000011288	-	99	40.360	ENSPANG00000005495	SRP72	94	41.590	Papio_anubis
ENSCSAVG00000011288	-	95	33.232	ENSPANG00000030230	-	98	33.282	Papio_anubis
ENSCSAVG00000011288	-	89	42.811	ENSPSIG00000003003	SRP72	91	43.092	Pelodiscus_sinensis
ENSCSAVG00000011288	-	98	41.374	ENSPEMG00000012828	-	92	41.705	Peromyscus_maniculatus_bairdii
ENSCSAVG00000011288	-	93	42.302	ENSPCIG00000000732	SRP72	92	42.368	Phascolarctos_cinereus
ENSCSAVG00000011288	-	96	42.176	ENSPFOG00000003480	srp72	92	42.857	Poecilia_formosa
ENSCSAVG00000011288	-	98	41.840	ENSPLAG00000020122	srp72	92	42.857	Poecilia_latipinna
ENSCSAVG00000011288	-	96	42.176	ENSPMEG00000019988	srp72	92	42.857	Poecilia_mexicana
ENSCSAVG00000011288	-	98	41.691	ENSPREG00000006218	srp72	92	42.700	Poecilia_reticulata
ENSCSAVG00000011288	-	60	35.549	ENSPPYG00000009152	-	88	34.043	Pongo_abelii
ENSCSAVG00000011288	-	96	40.896	ENSPPYG00000014752	-	73	41.590	Pongo_abelii
ENSCSAVG00000011288	-	93	41.304	ENSPVAG00000005590	SRP72	94	40.735	Pteropus_vampyrus
ENSCSAVG00000011288	-	97	41.568	ENSPNYG00000001916	srp72	93	41.602	Pundamilia_nyererei
ENSCSAVG00000011288	-	97	41.815	ENSPNAG00000022424	srp72	97	41.053	Pygocentrus_nattereri
ENSCSAVG00000011288	-	98	40.936	ENSRNOG00000002100	LOC108348180	94	40.979	Rattus_norvegicus
ENSCSAVG00000011288	-	96	33.133	ENSRBIG00000029328	-	96	31.973	Rhinopithecus_bieti
ENSCSAVG00000011288	-	99	37.726	ENSRBIG00000042069	SRP72	93	39.417	Rhinopithecus_bieti
ENSCSAVG00000011288	-	99	40.360	ENSRROG00000035704	SRP72	94	41.590	Rhinopithecus_roxellana
ENSCSAVG00000011288	-	93	42.162	ENSSHAG00000000614	SRP72	87	43.421	Sarcophilus_harrisii
ENSCSAVG00000011288	-	95	42.727	ENSSFOG00015002026	srp72	96	42.576	Scleropages_formosus
ENSCSAVG00000011288	-	92	41.824	ENSSMAG00000007639	srp72	93	41.486	Scophthalmus_maximus
ENSCSAVG00000011288	-	92	42.138	ENSSDUG00000007345	srp72	91	42.072	Seriola_dumerili
ENSCSAVG00000011288	-	92	42.296	ENSSLDG00000021819	srp72	92	41.444	Seriola_lalandi_dorsalis
ENSCSAVG00000011288	-	60	39.589	ENSSARG00000005804	SRP72	53	37.931	Sorex_araneus
ENSCSAVG00000011288	-	92	42.188	ENSSPUG00000009740	SRP72	93	41.667	Sphenodon_punctatus
ENSCSAVG00000011288	-	92	42.453	ENSSPAG00000011565	srp72	93	42.105	Stegastes_partitus
ENSCSAVG00000011288	-	99	40.348	ENSSSCG00000008900	SRP72	92	40.465	Sus_scrofa
ENSCSAVG00000011288	-	96	42.129	ENSTGUG00000004767	SRP72	92	43.079	Taeniopygia_guttata
ENSCSAVG00000011288	-	96	40.573	ENSTRUG00000009831	srp72	92	41.130	Takifugu_rubripes
ENSCSAVG00000011288	-	97	41.518	ENSTNIG00000013073	srp72	91	41.601	Tetraodon_nigroviridis
ENSCSAVG00000011288	-	59	53.623	ENSTBEG00000007394	SRP72	58	57.143	Tupaia_belangeri
ENSCSAVG00000011288	-	93	38.919	ENSTTRG00000010945	SRP72	93	42.928	Tursiops_truncatus
ENSCSAVG00000011288	-	60	41.935	ENSUAMG00000001701	SRP72	89	40.800	Ursus_americanus
ENSCSAVG00000011288	-	92	42.567	ENSUMAG00000008151	SRP72	94	42.089	Ursus_maritimus
ENSCSAVG00000011288	-	99	37.097	ENSVPAG00000000458	SRP72	94	41.321	Vicugna_pacos
ENSCSAVG00000011288	-	93	42.081	ENSVVUG00000006020	SRP72	94	42.089	Vulpes_vulpes
ENSCSAVG00000011288	-	93	40.373	ENSXETG00000010205	srp72	92	41.503	Xenopus_tropicalis
ENSCSAVG00000011288	-	98	41.395	ENSXMAG00000018000	srp72	92	42.700	Xiphophorus_maculatus