EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000011293 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 8168 bases
Position: chrreftig_64:515160-523327
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000019231	MTS	PF05175.14	1.6e-06	1	1
ENSCSAVP00000019230	MTS	PF05175.14	1.8e-06	1	1
ENSCSAVP00000019230	Methyltransf_31	PF13847.6	1.2e-09	1	1
ENSCSAVP00000019231	Methyltransf_31	PF13847.6	1.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000019439	-	850	-	ENSCSAVP00000019231	221 (aa)	-	H2ZNR5
ENSCSAVT00000019438	-	705	-	ENSCSAVP00000019230	221 (aa)	-	H2ZNR4

Gene Model

Click here to download ENSCSAVG00000011293's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000011293's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000011293	-	74	30.409	ENSCSAVG00000006531	-	75	30.409
ENSCSAVG00000011293	-	96	60.094	ENSCSAVG00000004321	-	96	60.094
ENSCSAVG00000011293	-	95	75.238	ENSCSAVG00000005814	-	100	75.238
ENSCSAVG00000011293	-	77	64.706	ENSCSAVG00000007262	-	92	64.706
ENSCSAVG00000011293	-	100	74.324	ENSCSAVG00000011296	-	100	74.324
ENSCSAVG00000011293	-	100	94.118	ENSCSAVG00000011294	-	100	94.118

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000011293	-	99	52.727	ENSCING00000021159	-	99	52.727	Ciona_intestinalis
ENSCSAVG00000011293	-	66	30.137	ENSCING00000003740	-	72	30.137	Ciona_intestinalis