EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000011361 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 11710 bases
Position: chrreftig_48:3531130-3542839
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000019352	RimK	PF08443.11	2.6e-08	1	1
ENSCSAVP00000019354	RimK	PF08443.11	5.4e-07	1	1
ENSCSAVP00000019355	RimK	PF08443.11	5.9e-07	1	1
ENSCSAVP00000019356	RimK	PF08443.11	1.8e-06	1	1
ENSCSAVP00000019353	RimK	PF08443.11	2.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000019565	-	2019	-	ENSCSAVP00000019356	672 (aa)	-	H2ZP40
ENSCSAVT00000019564	-	2064	-	ENSCSAVP00000019355	687 (aa)	-	H2ZP39
ENSCSAVT00000019567	-	1350	-	ENSCSAVP00000019358	450 (aa)	-	H2ZP42
ENSCSAVT00000019566	-	1056	-	ENSCSAVP00000019357	351 (aa)	-	H2ZP41
ENSCSAVT00000019561	-	2578	-	ENSCSAVP00000019352	671 (aa)	-	H2ZP36
ENSCSAVT00000019563	-	1953	-	ENSCSAVP00000019354	650 (aa)	-	H2ZP38
ENSCSAVT00000019562	-	2186	-	ENSCSAVP00000019353	716 (aa)	-	H2ZP37

Gene Model

Click here to download ENSCSAVG00000011361's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000011361's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000011361	-	99	39.970	ENSCSAVG00000007062	-	99	38.385

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000011361	-	100	63.650	ENSG00000175198	PCCA	96	79.734	Homo_sapiens
ENSCSAVG00000011361	-	96	63.369	ENSAPOG00000002389	pcca	100	63.369	Acanthochromis_polyacanthus
ENSCSAVG00000011361	-	94	62.303	ENSAMEG00000016627	PCCA	99	62.303	Ailuropoda_melanoleuca
ENSCSAVG00000011361	-	89	67.222	ENSACIG00000015913	PCCA	98	69.524	Amphilophus_citrinellus
ENSCSAVG00000011361	-	100	64.042	ENSAOCG00000005451	pcca	94	64.042	Amphiprion_ocellaris
ENSCSAVG00000011361	-	100	64.339	ENSAPEG00000002955	pcca	94	64.339	Amphiprion_percula
ENSCSAVG00000011361	-	99	63.934	ENSATEG00000004273	pcca	98	65.233	Anabas_testudineus
ENSCSAVG00000011361	-	100	64.636	ENSAPLG00000002609	PCCA	97	64.636	Anas_platyrhynchos
ENSCSAVG00000011361	-	94	62.282	ENSANAG00000031162	PCCA	95	62.282	Aotus_nancymaae
ENSCSAVG00000011361	-	100	63.596	ENSACLG00000006725	pcca	93	63.596	Astatotilapia_calliptera
ENSCSAVG00000011361	-	100	62.009	ENSBTAG00000010672	PCCA	94	60.519	Bos_taurus
ENSCSAVG00000011361	-	100	62.704	ENSCJAG00000020998	PCCA	95	62.704	Callithrix_jacchus
ENSCSAVG00000011361	-	100	63.368	ENSCAFG00000005838	PCCA	92	63.368	Canis_familiaris
ENSCSAVG00000011361	-	100	63.368	ENSCAFG00020022683	PCCA	92	63.368	Canis_lupus_dingo
ENSCSAVG00000011361	-	100	62.370	ENSCHIG00000007335	PCCA	92	62.370	Capra_hircus
ENSCSAVG00000011361	-	100	62.853	ENSTSYG00000000053	PCCA	95	62.985	Carlito_syrichta
ENSCSAVG00000011361	-	99	63.690	ENSCPOG00000011274	PCCA	92	63.690	Cavia_porcellus
ENSCSAVG00000011361	-	100	63.299	ENSCCAG00000022253	PCCA	95	63.299	Cebus_capucinus
ENSCSAVG00000011361	-	100	63.150	ENSCATG00000034177	PCCA	95	63.150	Cercocebus_atys
ENSCSAVG00000011361	-	99	63.040	ENSCLAG00000003205	PCCA	92	63.040	Chinchilla_lanigera
ENSCSAVG00000011361	-	100	63.150	ENSCSAG00000017493	PCCA	92	63.150	Chlorocebus_sabaeus
ENSCSAVG00000011361	-	91	68.162	ENSCHOG00000000247	PCCA	83	68.590	Choloepus_hoffmanni
ENSCSAVG00000011361	-	100	63.817	ENSCPBG00000018046	PCCA	98	60.391	Chrysemys_picta_bellii
ENSCSAVG00000011361	-	99	77.151	ENSCING00000008081	-	99	74.825	Ciona_intestinalis
ENSCSAVG00000011361	-	100	63.150	ENSCANG00000013062	PCCA	95	63.150	Colobus_angolensis_palliatus
ENSCSAVG00000011361	-	99	63.338	ENSCGRG00001015819	Pcca	92	63.338	Cricetulus_griseus_chok1gshd
ENSCSAVG00000011361	-	99	63.338	ENSCGRG00000014796	Pcca	93	63.338	Cricetulus_griseus_crigri
ENSCSAVG00000011361	-	99	64.382	ENSCSEG00000016645	pcca	94	64.382	Cynoglossus_semilaevis
ENSCSAVG00000011361	-	93	63.477	ENSCVAG00000010430	pcca	95	75.058	Cyprinodon_variegatus
ENSCSAVG00000011361	-	100	63.150	ENSDNOG00000042384	PCCA	100	62.751	Dasypus_novemcinctus
ENSCSAVG00000011361	-	100	58.410	ENSDORG00000012949	Pcca	90	58.410	Dipodomys_ordii
ENSCSAVG00000011361	-	100	63.556	ENSEASG00005022166	PCCA	92	63.556	Equus_asinus_asinus
ENSCSAVG00000011361	-	100	63.905	ENSECAG00000018952	PCCA	92	63.905	Equus_caballus
ENSCSAVG00000011361	-	99	63.198	ENSELUG00000002383	pcca	100	63.198	Esox_lucius
ENSCSAVG00000011361	-	100	62.667	ENSFCAG00000012573	PCCA	95	62.667	Felis_catus
ENSCSAVG00000011361	-	100	62.704	ENSFDAG00000005817	PCCA	89	62.704	Fukomys_damarensis
ENSCSAVG00000011361	-	100	63.299	ENSFHEG00000011811	pcca	94	63.299	Fundulus_heteroclitus
ENSCSAVG00000011361	-	100	63.744	ENSGAFG00000011218	pcca	94	63.744	Gambusia_affinis
ENSCSAVG00000011361	-	97	63.859	ENSGACG00000002342	pcca	100	63.859	Gasterosteus_aculeatus
ENSCSAVG00000011361	-	94	63.622	ENSGAGG00000010472	PCCA	96	63.622	Gopherus_agassizii
ENSCSAVG00000011361	-	100	63.299	ENSGGOG00000012516	PCCA	95	63.299	Gorilla_gorilla
ENSCSAVG00000011361	-	100	63.001	ENSHGLG00000011057	PCCA	92	63.001	Heterocephalus_glaber_female
ENSCSAVG00000011361	-	100	63.001	ENSHGLG00100001468	PCCA	92	63.001	Heterocephalus_glaber_male
ENSCSAVG00000011361	-	100	63.299	ENSHCOG00000016098	pcca	100	62.751	Hippocampus_comes
ENSCSAVG00000011361	-	100	62.853	ENSSTOG00000021045	PCCA	97	62.853	Ictidomys_tridecemlineatus
ENSCSAVG00000011361	-	100	63.150	ENSJJAG00000011150	Pcca	93	63.150	Jaculus_jaculus
ENSCSAVG00000011361	-	100	63.650	ENSKMAG00000014632	pcca	100	60.165	Kryptolebias_marmoratus
ENSCSAVG00000011361	-	97	61.562	ENSLACG00000012828	PCCA	100	62.191	Latimeria_chalumnae
ENSCSAVG00000011361	-	99	63.095	ENSLAFG00000014958	PCCA	100	63.095	Loxodonta_africana
ENSCSAVG00000011361	-	100	63.150	ENSMFAG00000020427	PCCA	95	63.150	Macaca_fascicularis
ENSCSAVG00000011361	-	100	63.150	ENSMMUG00000004493	PCCA	95	63.150	Macaca_mulatta
ENSCSAVG00000011361	-	100	63.150	ENSMNEG00000045261	PCCA	95	63.150	Macaca_nemestrina
ENSCSAVG00000011361	-	100	63.001	ENSMLEG00000033842	PCCA	95	63.001	Mandrillus_leucophaeus
ENSCSAVG00000011361	-	99	63.338	ENSMAMG00000009304	pcca	97	60.976	Mastacembelus_armatus
ENSCSAVG00000011361	-	100	63.596	ENSMZEG00005018487	pcca	93	63.596	Maylandia_zebra
ENSCSAVG00000011361	-	65	71.395	ENSMGAG00000014892	PCCA	100	71.395	Meleagris_gallopavo
ENSCSAVG00000011361	-	94	61.792	ENSMAUG00000000626	Pcca	94	61.792	Mesocricetus_auratus
ENSCSAVG00000011361	-	100	62.704	ENSMICG00000010685	-	95	62.704	Microcebus_murinus
ENSCSAVG00000011361	-	70	69.316	ENSMICG00000038258	-	85	69.011	Microcebus_murinus
ENSCSAVG00000011361	-	99	63.338	ENSMOCG00000015156	Pcca	96	61.103	Microtus_ochrogaster
ENSCSAVG00000011361	-	99	63.636	ENSMALG00000009947	pcca	100	63.110	Monopterus_albus
ENSCSAVG00000011361	-	99	63.338	MGP_CAROLIEiJ_G0019618	Pcca	93	62.555	Mus_caroli
ENSCSAVG00000011361	-	99	63.338	ENSMUSG00000041650	Pcca	93	62.555	Mus_musculus
ENSCSAVG00000011361	-	99	63.338	MGP_PahariEiJ_G0030634	Pcca	93	62.555	Mus_pahari
ENSCSAVG00000011361	-	99	63.338	MGP_SPRETEiJ_G0020515	Pcca	93	62.555	Mus_spretus
ENSCSAVG00000011361	-	100	63.111	ENSMPUG00000011333	PCCA	98	63.111	Mustela_putorius_furo
ENSCSAVG00000011361	-	78	68.702	ENSMLUG00000005729	PCCA	89	68.702	Myotis_lucifugus
ENSCSAVG00000011361	-	99	58.544	ENSNGAG00000016528	Pcca	92	58.544	Nannospalax_galili
ENSCSAVG00000011361	-	79	65.455	ENSNBRG00000019075	pcca	91	65.897	Neolamprologus_brichardi
ENSCSAVG00000011361	-	100	62.556	ENSODEG00000010667	PCCA	91	60.606	Octodon_degus
ENSCSAVG00000011361	-	99	64.083	ENSONIG00000013151	pcca	96	61.135	Oreochromis_niloticus
ENSCSAVG00000011361	-	90	62.871	ENSOCUG00000017230	PCCA	89	62.871	Oryctolagus_cuniculus
ENSCSAVG00000011361	-	99	62.891	ENSORLG00000000361	pcca	94	62.891	Oryzias_latipes
ENSCSAVG00000011361	-	99	63.040	ENSORLG00020005749	pcca	94	63.040	Oryzias_latipes_hni
ENSCSAVG00000011361	-	99	63.189	ENSORLG00015012738	pcca	93	63.189	Oryzias_latipes_hsok
ENSCSAVG00000011361	-	99	63.189	ENSOMEG00000001912	pcca	99	59.663	Oryzias_melastigma
ENSCSAVG00000011361	-	100	63.596	ENSOGAG00000017088	PCCA	92	63.596	Otolemur_garnettii
ENSCSAVG00000011361	-	96	62.096	ENSOARG00000004442	PCCA	100	62.096	Ovis_aries
ENSCSAVG00000011361	-	100	63.447	ENSPPAG00000036841	PCCA	95	63.447	Pan_paniscus
ENSCSAVG00000011361	-	100	62.667	ENSPPRG00000006626	PCCA	95	62.667	Panthera_pardus
ENSCSAVG00000011361	-	94	61.611	ENSPTIG00000009732	PCCA	100	61.611	Panthera_tigris_altaica
ENSCSAVG00000011361	-	100	63.447	ENSPTRG00000006001	PCCA	95	63.447	Pan_troglodytes
ENSCSAVG00000011361	-	100	64.095	ENSPKIG00000004765	pcca	98	60.948	Paramormyrops_kingsleyae
ENSCSAVG00000011361	-	96	62.442	ENSPSIG00000009154	PCCA	100	62.442	Pelodiscus_sinensis
ENSCSAVG00000011361	-	99	62.146	ENSPEMG00000009083	Pcca	95	60.057	Peromyscus_maniculatus_bairdii
ENSCSAVG00000011361	-	100	62.519	ENSPCIG00000027261	PCCA	84	73.474	Phascolarctos_cinereus
ENSCSAVG00000011361	-	100	63.893	ENSPFOG00000014855	pcca	94	63.893	Poecilia_formosa
ENSCSAVG00000011361	-	100	63.893	ENSPLAG00000016583	pcca	94	63.893	Poecilia_latipinna
ENSCSAVG00000011361	-	100	63.744	ENSPMEG00000011613	pcca	94	63.744	Poecilia_mexicana
ENSCSAVG00000011361	-	98	62.840	ENSPREG00000007537	pcca	100	62.840	Poecilia_reticulata
ENSCSAVG00000011361	-	100	63.650	ENSPPYG00000005473	PCCA	92	63.650	Pongo_abelii
ENSCSAVG00000011361	-	100	63.001	ENSPCOG00000015321	PCCA	95	64.336	Propithecus_coquereli
ENSCSAVG00000011361	-	99	62.613	ENSPNYG00000008226	pcca	100	62.613	Pundamilia_nyererei
ENSCSAVG00000011361	-	100	64.339	ENSPNAG00000011078	pcca	94	64.339	Pygocentrus_nattereri
ENSCSAVG00000011361	-	100	63.001	ENSRROG00000030936	PCCA	95	63.001	Rhinopithecus_roxellana
ENSCSAVG00000011361	-	100	62.853	ENSSBOG00000020005	PCCA	95	62.853	Saimiri_boliviensis_boliviensis
ENSCSAVG00000011361	-	54	77.077	ENSSHAG00000014732	-	100	77.364	Sarcophilus_harrisii
ENSCSAVG00000011361	-	100	62.748	ENSSFOG00015021986	pcca	98	60.752	Scleropages_formosus
ENSCSAVG00000011361	-	96	63.679	ENSSMAG00000018126	pcca	100	63.679	Scophthalmus_maximus
ENSCSAVG00000011361	-	99	63.636	ENSSDUG00000021326	pcca	94	63.636	Seriola_dumerili
ENSCSAVG00000011361	-	99	63.487	ENSSLDG00000016568	pcca	98	65.785	Seriola_lalandi_dorsalis
ENSCSAVG00000011361	-	94	60.443	ENSSPUG00000006036	PCCA	96	60.443	Sphenodon_punctatus
ENSCSAVG00000011361	-	97	62.021	ENSSPAG00000022191	pcca	89	62.021	Stegastes_partitus
ENSCSAVG00000011361	-	100	62.815	ENSSSCG00000009522	PCCA	92	62.815	Sus_scrofa
ENSCSAVG00000011361	-	100	62.407	ENSTGUG00000010915	PCCA	97	62.407	Taeniopygia_guttata
ENSCSAVG00000011361	-	99	63.934	ENSTRUG00000004990	pcca	96	65.961	Takifugu_rubripes
ENSCSAVG00000011361	-	99	63.095	ENSTTRG00000002569	PCCA	92	63.095	Tursiops_truncatus
ENSCSAVG00000011361	-	100	61.630	ENSUMAG00000023453	PCCA	100	62.712	Ursus_maritimus
ENSCSAVG00000011361	-	100	63.220	ENSVVUG00000013550	PCCA	98	63.220	Vulpes_vulpes
ENSCSAVG00000011361	-	98	63.182	ENSXCOG00000014159	pcca	100	63.182	Xiphophorus_couchianus
ENSCSAVG00000011361	-	100	63.893	ENSXMAG00000014869	pcca	94	63.893	Xiphophorus_maculatus