EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000011376 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 807 bases
Position: chrreftig_48:3543330-3544136
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000019399	RRM_1	PF00076.22	3.4e-30	1	2
ENSCSAVP00000019399	RRM_1	PF00076.22	3.4e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000019609	-	756	-	ENSCSAVP00000019399	252 (aa)	-	H2ZP83

Gene Model

Click here to download ENSCSAVG00000011376's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000011376's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000011376	-	78	63.500	ENSCSAVG00000002581	-	69	63.000
ENSCSAVG00000011376	-	73	37.234	ENSCSAVG00000006093	-	83	36.508

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000011376	-	78	56.633	ENSAPOG00000017395	srsf5a	82	46.875	Acanthochromis_polyacanthus
ENSCSAVG00000011376	-	78	57.653	ENSACIG00000011892	srsf5a	98	55.172	Amphilophus_citrinellus
ENSCSAVG00000011376	-	78	56.122	ENSAOCG00000014967	srsf5a	62	55.102	Amphiprion_ocellaris
ENSCSAVG00000011376	-	78	56.122	ENSAPEG00000009297	srsf5a	62	55.102	Amphiprion_percula
ENSCSAVG00000011376	-	78	56.784	ENSATEG00000000198	srsf5a	65	56.633	Anabas_testudineus
ENSCSAVG00000011376	-	78	55.051	ENSAPLG00000002469	-	70	53.535	Anas_platyrhynchos
ENSCSAVG00000011376	-	78	55.612	ENSACAG00000029015	-	68	54.592	Anolis_carolinensis
ENSCSAVG00000011376	-	78	58.163	ENSACLG00000027166	srsf5a	65	57.653	Astatotilapia_calliptera
ENSCSAVG00000011376	-	78	55.612	ENSAMXG00000030476	srsf5a	67	55.612	Astyanax_mexicanus
ENSCSAVG00000011376	-	78	55.838	ENSCPBG00000021518	-	70	55.051	Chrysemys_picta_bellii
ENSCSAVG00000011376	-	78	57.711	ENSCSEG00000008109	srsf5a	62	58.673	Cynoglossus_semilaevis
ENSCSAVG00000011376	-	77	57.513	ENSCVAG00000016982	srsf5a	97	60.145	Cyprinodon_variegatus
ENSCSAVG00000011376	-	78	56.633	ENSDARG00000029818	srsf5a	95	55.396	Danio_rerio
ENSCSAVG00000011376	-	78	57.653	ENSELUG00000020439	srsf5a	62	57.653	Esox_lucius
ENSCSAVG00000011376	-	78	54.082	ENSFALG00000005098	-	64	53.571	Ficedula_albicollis
ENSCSAVG00000011376	-	78	56.931	ENSFHEG00000003955	srsf5a	99	57.823	Fundulus_heteroclitus
ENSCSAVG00000011376	-	78	53.061	ENSGMOG00000000869	srsf5a	94	51.531	Gadus_morhua
ENSCSAVG00000011376	-	82	55.340	ENSGALG00000033259	SRSF5A	63	54.082	Gallus_gallus
ENSCSAVG00000011376	-	78	50.510	ENSGAFG00000018237	srsf5a	55	50.254	Gambusia_affinis
ENSCSAVG00000011376	-	78	54.082	ENSGACG00000011761	srsf5a	70	53.571	Gasterosteus_aculeatus
ENSCSAVG00000011376	-	78	55.330	ENSGAGG00000007312	-	70	54.545	Gopherus_agassizii
ENSCSAVG00000011376	-	78	58.163	ENSHBUG00000014048	srsf5a	64	56.633	Haplochromis_burtoni
ENSCSAVG00000011376	-	78	58.673	ENSHCOG00000017557	srsf5a	63	56.784	Hippocampus_comes
ENSCSAVG00000011376	-	78	57.286	ENSIPUG00000003439	srsf5a	69	55.612	Ictalurus_punctatus
ENSCSAVG00000011376	-	78	56.633	ENSKMAG00000014937	srsf5a	58	55.276	Kryptolebias_marmoratus
ENSCSAVG00000011376	-	78	59.694	ENSLBEG00000017153	srsf5a	74	59.694	Labrus_bergylta
ENSCSAVG00000011376	-	78	56.122	ENSLACG00000017874	-	72	57.143	Latimeria_chalumnae
ENSCSAVG00000011376	-	78	58.163	ENSLOCG00000014075	srsf5a	61	57.143	Lepisosteus_oculatus
ENSCSAVG00000011376	-	78	55.330	ENSMAMG00000000192	srsf5a	65	55.838	Mastacembelus_armatus
ENSCSAVG00000011376	-	78	58.163	ENSMZEG00005010485	srsf5a	64	56.633	Maylandia_zebra
ENSCSAVG00000011376	-	83	54.545	ENSMGAG00000011888	-	96	52.809	Meleagris_gallopavo
ENSCSAVG00000011376	-	78	55.102	ENSMMOG00000009793	srsf5a	81	45.490	Mola_mola
ENSCSAVG00000011376	-	78	54.082	ENSMALG00000021194	srsf5a	63	51.220	Monopterus_albus
ENSCSAVG00000011376	-	78	57.653	ENSNBRG00000000771	srsf5a	64	57.653	Neolamprologus_brichardi
ENSCSAVG00000011376	-	78	57.653	ENSONIG00000019583	srsf5a	64	57.653	Oreochromis_niloticus
ENSCSAVG00000011376	-	78	57.143	ENSORLG00000009268	srsf5a	67	55.612	Oryzias_latipes
ENSCSAVG00000011376	-	78	57.143	ENSORLG00020003281	srsf5	67	55.612	Oryzias_latipes_hni
ENSCSAVG00000011376	-	78	57.143	ENSORLG00015023075	srsf5	67	55.612	Oryzias_latipes_hsok
ENSCSAVG00000011376	-	78	56.122	ENSOMEG00000000628	srsf5a	66	56.633	Oryzias_melastigma
ENSCSAVG00000011376	-	79	53.140	ENSPKIG00000002054	srsf5a	68	55.102	Paramormyrops_kingsleyae
ENSCSAVG00000011376	-	78	56.345	ENSPSIG00000008238	-	69	55.051	Pelodiscus_sinensis
ENSCSAVG00000011376	-	78	56.633	ENSPMGG00000020125	srsf5a	55	53.000	Periophthalmus_magnuspinnatus
ENSCSAVG00000011376	-	78	58.586	ENSPFOG00000022993	srsf5a	60	58.673	Poecilia_formosa
ENSCSAVG00000011376	-	78	57.789	ENSPLAG00000005508	srsf5a	60	57.868	Poecilia_latipinna
ENSCSAVG00000011376	-	78	58.586	ENSPMEG00000016339	srsf5a	60	58.163	Poecilia_mexicana
ENSCSAVG00000011376	-	78	59.694	ENSPREG00000018091	srsf5a	61	59.694	Poecilia_reticulata
ENSCSAVG00000011376	-	78	58.163	ENSPNYG00000021245	srsf5a	64	56.633	Pundamilia_nyererei
ENSCSAVG00000011376	-	78	56.436	ENSPNAG00000021333	srsf5a	66	52.683	Pygocentrus_nattereri
ENSCSAVG00000011376	-	78	56.853	ENSSFOG00015008377	srsf5	66	55.102	Scleropages_formosus
ENSCSAVG00000011376	-	78	58.500	ENSSMAG00000010899	srsf5a	66	57.500	Scophthalmus_maximus
ENSCSAVG00000011376	-	78	56.122	ENSSDUG00000006103	srsf5a	63	54.082	Seriola_dumerili
ENSCSAVG00000011376	-	78	56.122	ENSSLDG00000004146	srsf5a	63	54.082	Seriola_lalandi_dorsalis
ENSCSAVG00000011376	-	78	57.143	ENSSPUG00000002052	-	68	56.633	Sphenodon_punctatus
ENSCSAVG00000011376	-	78	55.102	ENSSPAG00000002821	srsf5a	63	54.082	Stegastes_partitus
ENSCSAVG00000011376	-	78	55.102	ENSTGUG00000011492	-	68	53.571	Taeniopygia_guttata
ENSCSAVG00000011376	-	78	58.163	ENSTRUG00000022908	srsf5a	65	58.163	Takifugu_rubripes
ENSCSAVG00000011376	-	83	55.769	ENSXETG00000017937	srsf5a	72	57.653	Xenopus_tropicalis
ENSCSAVG00000011376	-	78	55.446	ENSXCOG00000015338	srsf5a	61	56.633	Xiphophorus_couchianus
ENSCSAVG00000011376	-	78	59.184	ENSXMAG00000012823	srsf5a	61	59.184	Xiphophorus_maculatus