EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000011416 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 4780 bases
Position: chrreftig_16:3727941-3732720
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000019474	U3_assoc_6	PF08640.11	3.4e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000019684	-	1514	-	ENSCSAVP00000019474	325 (aa)	-	H2ZPF8
ENSCSAVT00000019683	-	892	-	ENSCSAVP00000019473	254 (aa)	-	H2ZPF7

Gene Model

Click here to download ENSCSAVG00000011416's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000011416's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000011416	-	99	38.226	ENSAPOG00000000435	utp6	54	38.226	Acanthochromis_polyacanthus
ENSCSAVG00000011416	-	98	37.152	ENSAMEG00000005443	UTP6	53	37.152	Ailuropoda_melanoleuca
ENSCSAVG00000011416	-	99	33.945	ENSACIG00000004124	utp6	54	33.837	Amphilophus_citrinellus
ENSCSAVG00000011416	-	99	38.226	ENSAOCG00000016812	utp6	54	38.226	Amphiprion_ocellaris
ENSCSAVG00000011416	-	99	38.532	ENSAPEG00000023565	utp6	54	38.532	Amphiprion_percula
ENSCSAVG00000011416	-	99	37.003	ENSATEG00000003401	utp6	57	37.003	Anabas_testudineus
ENSCSAVG00000011416	-	95	36.741	ENSAPLG00000005821	UTP6	52	36.741	Anas_platyrhynchos
ENSCSAVG00000011416	-	99	40.367	ENSACAG00000009472	UTP6	54	40.367	Anolis_carolinensis
ENSCSAVG00000011416	-	85	41.091	ENSANAG00000034603	UTP6	54	41.091	Aotus_nancymaae
ENSCSAVG00000011416	-	99	37.615	ENSACLG00000006728	utp6	54	37.615	Astatotilapia_calliptera
ENSCSAVG00000011416	-	99	36.697	ENSAMXG00000009478	utp6	54	36.697	Astyanax_mexicanus
ENSCSAVG00000011416	-	100	37.910	ENSBTAG00000015612	UTP6	60	37.910	Bos_taurus
ENSCSAVG00000011416	-	98	37.152	ENSCAFG00000018507	UTP6	53	37.152	Canis_familiaris
ENSCSAVG00000011416	-	98	37.152	ENSCAFG00020014678	UTP6	53	37.152	Canis_lupus_dingo
ENSCSAVG00000011416	-	100	37.838	ENSCHIG00000009726	-	54	37.838	Capra_hircus
ENSCSAVG00000011416	-	100	37.838	ENSCHIG00000017954	-	54	37.838	Capra_hircus
ENSCSAVG00000011416	-	80	38.550	ENSCAPG00000017595	UTP6	50	38.550	Cavia_aperea
ENSCSAVG00000011416	-	98	37.771	ENSCATG00000034868	UTP6	54	37.771	Cercocebus_atys
ENSCSAVG00000011416	-	98	37.771	ENSCSAG00000006595	UTP6	53	37.771	Chlorocebus_sabaeus
ENSCSAVG00000011416	-	98	41.176	ENSCPBG00000004652	UTP6	53	41.176	Chrysemys_picta_bellii
ENSCSAVG00000011416	-	99	69.231	ENSCING00000022947	-	53	69.231	Ciona_intestinalis
ENSCSAVG00000011416	-	98	38.080	ENSCGRG00001000046	Utp6	53	38.080	Cricetulus_griseus_chok1gshd
ENSCSAVG00000011416	-	89	35.959	ENSCGRG00000011543	Utp6	51	35.959	Cricetulus_griseus_crigri
ENSCSAVG00000011416	-	82	40.672	ENSCSEG00000013422	utp6	73	53.521	Cynoglossus_semilaevis
ENSCSAVG00000011416	-	99	34.969	ENSDARG00000098433	utp6	100	43.646	Danio_rerio
ENSCSAVG00000011416	-	98	38.080	ENSDNOG00000037018	UTP6	53	38.080	Dasypus_novemcinctus
ENSCSAVG00000011416	-	100	37.082	ENSDORG00000003843	Utp6	59	37.082	Dipodomys_ordii
ENSCSAVG00000011416	-	99	38.906	ENSELUG00000006618	utp6	54	38.906	Esox_lucius
ENSCSAVG00000011416	-	99	39.077	ENSFALG00000002282	UTP6	54	39.077	Ficedula_albicollis
ENSCSAVG00000011416	-	97	38.854	ENSFDAG00000019506	UTP6	51	38.854	Fukomys_damarensis
ENSCSAVG00000011416	-	99	37.309	ENSFHEG00000010373	utp6	54	37.309	Fundulus_heteroclitus
ENSCSAVG00000011416	-	99	40.308	ENSGALG00000003260	UTP6	54	40.308	Gallus_gallus
ENSCSAVG00000011416	-	99	37.003	ENSGAFG00000008505	utp6	54	37.003	Gambusia_affinis
ENSCSAVG00000011416	-	99	36.196	ENSGACG00000019424	utp6	54	36.196	Gasterosteus_aculeatus
ENSCSAVG00000011416	-	98	41.667	ENSGAGG00000004820	UTP6	53	41.667	Gopherus_agassizii
ENSCSAVG00000011416	-	85	34.909	ENSGGOG00000026003	-	50	34.909	Gorilla_gorilla
ENSCSAVG00000011416	-	99	37.615	ENSHBUG00000018668	utp6	54	37.615	Haplochromis_burtoni
ENSCSAVG00000011416	-	99	37.195	ENSHCOG00000017277	utp6	54	37.195	Hippocampus_comes
ENSCSAVG00000011416	-	99	34.663	ENSIPUG00000022587	Utp6	54	34.663	Ictalurus_punctatus
ENSCSAVG00000011416	-	98	38.700	ENSSTOG00000015875	UTP6	53	38.700	Ictidomys_tridecemlineatus
ENSCSAVG00000011416	-	99	37.003	ENSKMAG00000021631	utp6	54	37.003	Kryptolebias_marmoratus
ENSCSAVG00000011416	-	99	41.538	ENSLACG00000017158	UTP6	54	41.538	Latimeria_chalumnae
ENSCSAVG00000011416	-	100	38.110	ENSLOCG00000013797	utp6	54	38.110	Lepisosteus_oculatus
ENSCSAVG00000011416	-	96	38.854	ENSLAFG00000013008	UTP6	51	38.854	Loxodonta_africana
ENSCSAVG00000011416	-	98	37.771	ENSMFAG00000038842	UTP6	53	37.771	Macaca_fascicularis
ENSCSAVG00000011416	-	98	37.771	ENSMMUG00000020403	UTP6	53	37.771	Macaca_mulatta
ENSCSAVG00000011416	-	98	37.771	ENSMNEG00000039480	UTP6	54	37.771	Macaca_nemestrina
ENSCSAVG00000011416	-	98	35.294	ENSMLEG00000032174	UTP6	58	35.294	Mandrillus_leucophaeus
ENSCSAVG00000011416	-	99	37.615	ENSMAMG00000002228	utp6	54	37.615	Mastacembelus_armatus
ENSCSAVG00000011416	-	99	37.615	ENSMZEG00005023895	utp6	54	37.615	Maylandia_zebra
ENSCSAVG00000011416	-	90	37.966	ENSMGAG00000008111	UTP6	51	37.966	Meleagris_gallopavo
ENSCSAVG00000011416	-	98	37.771	ENSMAUG00000021895	Utp6	54	37.771	Mesocricetus_auratus
ENSCSAVG00000011416	-	98	36.842	ENSMICG00000002632	UTP6	53	36.842	Microcebus_murinus
ENSCSAVG00000011416	-	98	38.080	ENSMOCG00000014163	Utp6	53	38.080	Microtus_ochrogaster
ENSCSAVG00000011416	-	98	36.420	ENSMMOG00000008653	utp6	63	50.847	Mola_mola
ENSCSAVG00000011416	-	99	37.309	ENSMALG00000021112	utp6	54	37.309	Monopterus_albus
ENSCSAVG00000011416	-	98	38.390	MGP_CAROLIEiJ_G0016828	Utp6	53	38.390	Mus_caroli
ENSCSAVG00000011416	-	98	38.390	ENSMUSG00000035575	Utp6	53	38.390	Mus_musculus
ENSCSAVG00000011416	-	98	38.700	MGP_PahariEiJ_G0017965	Utp6	59	38.700	Mus_pahari
ENSCSAVG00000011416	-	98	38.390	MGP_SPRETEiJ_G0017672	Utp6	53	38.390	Mus_spretus
ENSCSAVG00000011416	-	98	37.461	ENSMPUG00000014581	UTP6	53	37.461	Mustela_putorius_furo
ENSCSAVG00000011416	-	98	38.700	ENSMLUG00000016422	UTP6	53	38.700	Myotis_lucifugus
ENSCSAVG00000011416	-	94	39.088	ENSNGAG00000015482	Utp6	50	39.088	Nannospalax_galili
ENSCSAVG00000011416	-	99	37.615	ENSNBRG00000019714	utp6	54	37.615	Neolamprologus_brichardi
ENSCSAVG00000011416	-	71	41.739	ENSODEG00000011971	UTP6	57	41.739	Octodon_degus
ENSCSAVG00000011416	-	99	37.615	ENSONIG00000018090	utp6	54	37.615	Oreochromis_niloticus
ENSCSAVG00000011416	-	91	39.130	ENSOANG00000004279	UTP6	50	39.130	Ornithorhynchus_anatinus
ENSCSAVG00000011416	-	100	38.298	ENSOCUG00000016980	UTP6	54	38.298	Oryctolagus_cuniculus
ENSCSAVG00000011416	-	99	37.309	ENSORLG00020010377	utp6	54	37.309	Oryzias_latipes_hni
ENSCSAVG00000011416	-	99	37.309	ENSORLG00015008893	utp6	54	37.309	Oryzias_latipes_hsok
ENSCSAVG00000011416	-	98	33.739	ENSOGAG00000004511	UTP6	61	33.739	Otolemur_garnettii
ENSCSAVG00000011416	-	100	37.838	ENSOARG00000013474	UTP6	54	37.838	Ovis_aries
ENSCSAVG00000011416	-	94	38.436	ENSPPRG00000001010	UTP6	50	38.436	Panthera_pardus
ENSCSAVG00000011416	-	83	36.029	ENSPTRG00000044798	-	50	36.029	Pan_troglodytes
ENSCSAVG00000011416	-	98	36.420	ENSPANG00000023113	UTP6	53	36.420	Papio_anubis
ENSCSAVG00000011416	-	99	37.082	ENSPKIG00000004653	utp6	54	37.082	Paramormyrops_kingsleyae
ENSCSAVG00000011416	-	99	41.615	ENSPSIG00000012435	UTP6	53	41.615	Pelodiscus_sinensis
ENSCSAVG00000011416	-	99	37.615	ENSPMGG00000009548	utp6	54	37.615	Periophthalmus_magnuspinnatus
ENSCSAVG00000011416	-	98	38.080	ENSPEMG00000014081	Utp6	53	38.080	Peromyscus_maniculatus_bairdii
ENSCSAVG00000011416	-	99	36.697	ENSPFOG00000013918	utp6	54	36.697	Poecilia_formosa
ENSCSAVG00000011416	-	99	37.309	ENSPLAG00000017825	utp6	54	37.309	Poecilia_latipinna
ENSCSAVG00000011416	-	99	37.003	ENSPMEG00000008133	utp6	54	37.003	Poecilia_mexicana
ENSCSAVG00000011416	-	99	37.082	ENSPREG00000013108	utp6	53	37.082	Poecilia_reticulata
ENSCSAVG00000011416	-	98	36.957	ENSPPYG00000008154	UTP6	51	36.957	Pongo_abelii
ENSCSAVG00000011416	-	98	37.152	ENSPCOG00000010224	UTP6	53	37.152	Propithecus_coquereli
ENSCSAVG00000011416	-	98	34.365	ENSPVAG00000015759	UTP6	53	34.365	Pteropus_vampyrus
ENSCSAVG00000011416	-	99	37.615	ENSPNYG00000002290	utp6	54	37.615	Pundamilia_nyererei
ENSCSAVG00000011416	-	98	37.461	ENSRNOG00000014209	Utp6	53	37.461	Rattus_norvegicus
ENSCSAVG00000011416	-	98	37.771	ENSRBIG00000020822	UTP6	53	37.771	Rhinopithecus_bieti
ENSCSAVG00000011416	-	98	37.771	ENSRROG00000036838	UTP6	55	37.771	Rhinopithecus_roxellana
ENSCSAVG00000011416	-	72	40.426	ENSSHAG00000018792	-	77	40.426	Sarcophilus_harrisii
ENSCSAVG00000011416	-	99	36.810	ENSSMAG00000014772	utp6	54	36.810	Scophthalmus_maximus
ENSCSAVG00000011416	-	99	37.309	ENSSDUG00000000329	utp6	54	37.309	Seriola_dumerili
ENSCSAVG00000011416	-	99	37.615	ENSSLDG00000016724	utp6	54	37.615	Seriola_lalandi_dorsalis
ENSCSAVG00000011416	-	96	38.854	ENSSARG00000010778	UTP6	51	38.854	Sorex_araneus
ENSCSAVG00000011416	-	99	36.697	ENSSPAG00000011871	utp6	59	36.697	Stegastes_partitus
ENSCSAVG00000011416	-	96	37.700	ENSSSCG00000017745	UTP6	57	37.700	Sus_scrofa
ENSCSAVG00000011416	-	99	39.077	ENSTGUG00000004999	UTP6	54	39.077	Taeniopygia_guttata
ENSCSAVG00000011416	-	99	36.086	ENSTNIG00000003235	utp6	54	36.086	Tetraodon_nigroviridis
ENSCSAVG00000011416	-	96	38.854	ENSTTRG00000009911	UTP6	51	38.854	Tursiops_truncatus
ENSCSAVG00000011416	-	98	37.461	ENSUMAG00000015139	UTP6	53	37.461	Ursus_maritimus
ENSCSAVG00000011416	-	100	37.386	ENSVPAG00000005782	UTP6	54	37.386	Vicugna_pacos
ENSCSAVG00000011416	-	98	37.152	ENSVVUG00000012238	UTP6	53	37.152	Vulpes_vulpes
ENSCSAVG00000011416	-	99	37.003	ENSXCOG00000013626	utp6	71	58.333	Xiphophorus_couchianus
ENSCSAVG00000011416	-	99	37.003	ENSXMAG00000017414	utp6	54	37.003	Xiphophorus_maculatus