EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000011454 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 12892 bases
Position: chrreftig_1:4643252-4656143
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000019533	CPSF_A	PF03178.15	8.7e-97	1	1
ENSCSAVP00000019537	CPSF_A	PF03178.15	8.9e-97	1	1
ENSCSAVP00000019532	CPSF_A	PF03178.15	1.1e-95	1	1
ENSCSAVP00000019531	CPSF_A	PF03178.15	1e-94	1	1
ENSCSAVP00000019534	CPSF_A	PF03178.15	2.3e-92	1	1
ENSCSAVP00000019535	CPSF_A	PF03178.15	2.6e-56	1	2
ENSCSAVP00000019535	CPSF_A	PF03178.15	2.6e-56	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000019743	-	4005	-	ENSCSAVP00000019532	1216 (aa)	-	H2ZPL6
ENSCSAVT00000019742	-	3905	-	ENSCSAVP00000019531	1192 (aa)	-	H2ZPL5
ENSCSAVT00000019745	-	3886	-	ENSCSAVP00000019534	1196 (aa)	-	H2ZPL8
ENSCSAVT00000019744	-	4232	-	ENSCSAVP00000019533	1309 (aa)	-	H2ZPL7
ENSCSAVT00000019747	-	2245	-	ENSCSAVP00000019536	367 (aa)	-	H2ZPM0
ENSCSAVT00000019746	-	3441	-	ENSCSAVP00000019535	1147 (aa)	-	H2ZPL9
ENSCSAVT00000019748	-	1605	-	ENSCSAVP00000019537	381 (aa)	-	H2ZPM1

Gene Model

Click here to download ENSCSAVG00000011454's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000011454's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000011454	-	100	79.475	ENSG00000189091	SF3B3	100	84.211	Homo_sapiens
ENSCSAVG00000011454	-	100	75.109	ENSAPOG00000006172	sf3b3	98	78.261	Acanthochromis_polyacanthus
ENSCSAVG00000011454	-	100	79.197	ENSAMEG00000002187	SF3B3	99	79.197	Ailuropoda_melanoleuca
ENSCSAVG00000011454	-	92	76.964	ENSACIG00000016487	sf3b3	99	78.600	Amphilophus_citrinellus
ENSCSAVG00000011454	-	100	78.489	ENSAOCG00000007158	sf3b3	99	78.489	Amphiprion_ocellaris
ENSCSAVG00000011454	-	100	78.489	ENSAPEG00000022786	sf3b3	99	78.489	Amphiprion_percula
ENSCSAVG00000011454	-	100	78.571	ENSATEG00000013708	sf3b3	99	78.571	Anabas_testudineus
ENSCSAVG00000011454	-	86	79.817	ENSAPLG00000004996	SF3B3	99	79.817	Anas_platyrhynchos
ENSCSAVG00000011454	-	100	79.228	ENSACAG00000001817	SF3B3	99	79.298	Anolis_carolinensis
ENSCSAVG00000011454	-	100	79.475	ENSANAG00000028001	SF3B3	99	79.475	Aotus_nancymaae
ENSCSAVG00000011454	-	100	75.283	ENSACLG00000022555	sf3b3	99	78.732	Astatotilapia_calliptera
ENSCSAVG00000011454	-	100	78.407	ENSAMXG00000003410	sf3b3	99	78.407	Astyanax_mexicanus
ENSCSAVG00000011454	-	100	79.475	ENSBTAG00000010627	SF3B3	99	79.475	Bos_taurus
ENSCSAVG00000011454	-	100	59.398	WBGene00019323	teg-4	99	60.610	Caenorhabditis_elegans
ENSCSAVG00000011454	-	100	79.475	ENSCJAG00000014773	SF3B3	99	79.475	Callithrix_jacchus
ENSCSAVG00000011454	-	100	79.392	ENSCAFG00000020151	SF3B3	99	79.392	Canis_familiaris
ENSCSAVG00000011454	-	100	79.392	ENSCAFG00020020912	SF3B3	99	79.392	Canis_lupus_dingo
ENSCSAVG00000011454	-	100	79.392	ENSCHIG00000019822	SF3B3	99	79.392	Capra_hircus
ENSCSAVG00000011454	-	100	79.475	ENSTSYG00000007910	SF3B3	99	79.475	Carlito_syrichta
ENSCSAVG00000011454	-	100	64.829	ENSCAPG00000001484	SF3B3	92	81.313	Cavia_aperea
ENSCSAVG00000011454	-	100	78.489	ENSCPOG00000000586	SF3B3	99	78.489	Cavia_porcellus
ENSCSAVG00000011454	-	100	79.475	ENSCCAG00000017736	SF3B3	99	79.475	Cebus_capucinus
ENSCSAVG00000011454	-	100	79.475	ENSCATG00000036562	SF3B3	99	79.475	Cercocebus_atys
ENSCSAVG00000011454	-	100	79.475	ENSCLAG00000003921	SF3B3	99	79.475	Chinchilla_lanigera
ENSCSAVG00000011454	-	100	79.475	ENSCSAG00000004371	SF3B3	99	79.475	Chlorocebus_sabaeus
ENSCSAVG00000011454	-	90	79.128	ENSCHOG00000001878	SF3B3	90	79.128	Choloepus_hoffmanni
ENSCSAVG00000011454	-	100	79.475	ENSCPBG00000015853	SF3B3	99	79.475	Chrysemys_picta_bellii
ENSCSAVG00000011454	-	100	94.161	ENSCING00000001342	-	99	94.161	Ciona_intestinalis
ENSCSAVG00000011454	-	100	76.765	ENSCANG00000042920	SF3B3	99	79.298	Colobus_angolensis_palliatus
ENSCSAVG00000011454	-	100	79.392	ENSCGRG00001015908	Sf3b3	99	79.392	Cricetulus_griseus_chok1gshd
ENSCSAVG00000011454	-	100	79.392	ENSCGRG00000010180	Sf3b3	99	79.392	Cricetulus_griseus_crigri
ENSCSAVG00000011454	-	86	79.006	ENSCSEG00000014192	sf3b3	98	79.006	Cynoglossus_semilaevis
ENSCSAVG00000011454	-	100	78.489	ENSCVAG00000010459	sf3b3	99	78.489	Cyprinodon_variegatus
ENSCSAVG00000011454	-	100	78.325	ENSDARG00000103553	sf3b3	99	78.325	Danio_rerio
ENSCSAVG00000011454	-	100	70.079	ENSDNOG00000043626	SF3B3	99	78.709	Dasypus_novemcinctus
ENSCSAVG00000011454	-	100	79.475	ENSDORG00000014176	Sf3b3	99	79.475	Dipodomys_ordii
ENSCSAVG00000011454	-	100	71.417	FBgn0035162	Sf3b3	99	72.801	Drosophila_melanogaster
ENSCSAVG00000011454	-	84	88.649	ENSETEG00000002729	SF3B3	83	88.649	Echinops_telfairi
ENSCSAVG00000011454	-	100	76.273	ENSEBUG00000006117	sf3b3	99	76.273	Eptatretus_burgeri
ENSCSAVG00000011454	-	100	79.392	ENSEASG00005013376	SF3B3	99	79.392	Equus_asinus_asinus
ENSCSAVG00000011454	-	100	79.392	ENSECAG00000014053	SF3B3	99	79.392	Equus_caballus
ENSCSAVG00000011454	-	93	84.007	ENSEEUG00000015611	SF3B3	92	84.007	Erinaceus_europaeus
ENSCSAVG00000011454	-	100	76.904	ENSELUG00000015417	sf3b3	99	76.904	Esox_lucius
ENSCSAVG00000011454	-	100	79.392	ENSFCAG00000009487	SF3B3	99	79.392	Felis_catus
ENSCSAVG00000011454	-	100	79.228	ENSFALG00000007372	SF3B3	99	79.228	Ficedula_albicollis
ENSCSAVG00000011454	-	100	79.475	ENSFDAG00000002608	SF3B3	99	79.475	Fukomys_damarensis
ENSCSAVG00000011454	-	100	78.489	ENSFHEG00000017824	sf3b3	99	78.489	Fundulus_heteroclitus
ENSCSAVG00000011454	-	100	75.554	ENSGMOG00000008139	sf3b3	99	75.554	Gadus_morhua
ENSCSAVG00000011454	-	100	79.557	ENSGALG00000002531	SF3B3	99	79.557	Gallus_gallus
ENSCSAVG00000011454	-	100	78.407	ENSGAFG00000015206	sf3b3	98	79.412	Gambusia_affinis
ENSCSAVG00000011454	-	100	78.261	ENSGACG00000002646	sf3b3	99	78.261	Gasterosteus_aculeatus
ENSCSAVG00000011454	-	100	76.501	ENSGAGG00000006746	SF3B3	97	79.454	Gopherus_agassizii
ENSCSAVG00000011454	-	100	79.475	ENSGGOG00000003246	SF3B3	99	79.475	Gorilla_gorilla
ENSCSAVG00000011454	-	92	72.679	ENSHBUG00000005960	sf3b3	99	74.834	Haplochromis_burtoni
ENSCSAVG00000011454	-	100	79.475	ENSHGLG00000010135	SF3B3	99	79.475	Heterocephalus_glaber_female
ENSCSAVG00000011454	-	100	77.634	ENSHGLG00100011148	SF3B3	99	77.634	Heterocephalus_glaber_male
ENSCSAVG00000011454	-	100	78.161	ENSHCOG00000011981	sf3b3	99	78.161	Hippocampus_comes
ENSCSAVG00000011454	-	100	78.325	ENSIPUG00000020435	sf3b3	99	78.325	Ictalurus_punctatus
ENSCSAVG00000011454	-	100	79.475	ENSSTOG00000007065	SF3B3	99	79.475	Ictidomys_tridecemlineatus
ENSCSAVG00000011454	-	100	79.475	ENSJJAG00000003948	Sf3b3	99	79.475	Jaculus_jaculus
ENSCSAVG00000011454	-	100	76.108	ENSKMAG00000004066	sf3b3	99	77.835	Kryptolebias_marmoratus
ENSCSAVG00000011454	-	100	78.243	ENSLBEG00000018302	sf3b3	99	78.243	Labrus_bergylta
ENSCSAVG00000011454	-	98	76.100	ENSLACG00000012501	SF3B3	99	76.100	Latimeria_chalumnae
ENSCSAVG00000011454	-	100	78.753	ENSLOCG00000007566	sf3b3	99	78.753	Lepisosteus_oculatus
ENSCSAVG00000011454	-	100	79.392	ENSLAFG00000012219	SF3B3	99	82.516	Loxodonta_africana
ENSCSAVG00000011454	-	100	79.475	ENSMFAG00000045487	SF3B3	99	79.475	Macaca_fascicularis
ENSCSAVG00000011454	-	100	79.475	ENSMMUG00000017812	SF3B3	99	79.475	Macaca_mulatta
ENSCSAVG00000011454	-	100	79.475	ENSMNEG00000033385	SF3B3	99	79.475	Macaca_nemestrina
ENSCSAVG00000011454	-	100	76.683	ENSMLEG00000043891	SF3B3	99	76.683	Mandrillus_leucophaeus
ENSCSAVG00000011454	-	100	78.489	ENSMAMG00000016837	sf3b3	99	78.489	Mastacembelus_armatus
ENSCSAVG00000011454	-	100	78.654	ENSMZEG00005010836	sf3b3	99	78.732	Maylandia_zebra
ENSCSAVG00000011454	-	89	76.340	ENSMZEG00005026015	sf3b3	99	77.886	Maylandia_zebra
ENSCSAVG00000011454	-	100	79.557	ENSMGAG00000001597	SF3B3	99	79.557	Meleagris_gallopavo
ENSCSAVG00000011454	-	82	67.045	ENSMAUG00000013618	Sf3b3	95	67.166	Mesocricetus_auratus
ENSCSAVG00000011454	-	100	78.689	ENSMICG00000001363	SF3B3	99	78.689	Microcebus_murinus
ENSCSAVG00000011454	-	100	79.392	ENSMOCG00000006108	Sf3b3	99	79.392	Microtus_ochrogaster
ENSCSAVG00000011454	-	89	75.970	ENSMMOG00000002598	sf3b3	97	77.608	Mola_mola
ENSCSAVG00000011454	-	100	75.718	ENSMODG00000014363	SF3B3	99	75.718	Monodelphis_domestica
ENSCSAVG00000011454	-	100	78.571	ENSMALG00000008014	sf3b3	99	78.571	Monopterus_albus
ENSCSAVG00000011454	-	100	79.392	MGP_CAROLIEiJ_G0031563	Sf3b3	99	79.392	Mus_caroli
ENSCSAVG00000011454	-	100	79.392	ENSMUSG00000033732	Sf3b3	99	79.392	Mus_musculus
ENSCSAVG00000011454	-	100	79.392	MGP_SPRETEiJ_G0032681	Sf3b3	99	79.392	Mus_spretus
ENSCSAVG00000011454	-	100	79.392	ENSMPUG00000010277	SF3B3	99	79.392	Mustela_putorius_furo
ENSCSAVG00000011454	-	100	79.557	ENSMLUG00000014607	SF3B3	99	79.557	Myotis_lucifugus
ENSCSAVG00000011454	-	100	79.475	ENSNGAG00000021903	Sf3b3	99	79.475	Nannospalax_galili
ENSCSAVG00000011454	-	84	91.429	ENSNBRG00000007197	sf3b3	99	91.429	Neolamprologus_brichardi
ENSCSAVG00000011454	-	100	78.343	ENSNLEG00000016127	SF3B3	99	78.343	Nomascus_leucogenys
ENSCSAVG00000011454	-	92	77.614	ENSMEUG00000004479	SF3B3	94	77.614	Notamacropus_eugenii
ENSCSAVG00000011454	-	93	84.977	ENSOPRG00000009847	SF3B3	96	84.977	Ochotona_princeps
ENSCSAVG00000011454	-	100	79.475	ENSODEG00000014154	SF3B3	99	79.475	Octodon_degus
ENSCSAVG00000011454	-	100	78.818	ENSONIG00000011198	sf3b3	99	78.818	Oreochromis_niloticus
ENSCSAVG00000011454	-	100	79.310	ENSOANG00000001161	-	99	79.310	Ornithorhynchus_anatinus
ENSCSAVG00000011454	-	100	77.750	ENSOCUG00000004139	SF3B3	99	77.750	Oryctolagus_cuniculus
ENSCSAVG00000011454	-	100	78.079	ENSORLG00000013472	sf3b3	99	78.079	Oryzias_latipes
ENSCSAVG00000011454	-	100	78.079	ENSORLG00020017473	sf3b3	99	78.079	Oryzias_latipes_hni
ENSCSAVG00000011454	-	100	78.243	ENSORLG00015007710	sf3b3	99	78.243	Oryzias_latipes_hsok
ENSCSAVG00000011454	-	100	78.079	ENSOMEG00000014483	sf3b3	99	78.079	Oryzias_melastigma
ENSCSAVG00000011454	-	100	79.279	ENSOGAG00000016051	SF3B3	99	79.279	Otolemur_garnettii
ENSCSAVG00000011454	-	100	79.197	ENSOARG00000004816	SF3B3	99	79.298	Ovis_aries
ENSCSAVG00000011454	-	100	79.475	ENSPPAG00000026807	SF3B3	99	79.475	Pan_paniscus
ENSCSAVG00000011454	-	100	79.392	ENSPPRG00000001686	SF3B3	99	79.392	Panthera_pardus
ENSCSAVG00000011454	-	89	77.114	ENSPTIG00000020382	SF3B3	99	78.759	Panthera_tigris_altaica
ENSCSAVG00000011454	-	100	79.475	ENSPTRG00000008308	SF3B3	99	79.475	Pan_troglodytes
ENSCSAVG00000011454	-	100	79.475	ENSPANG00000024075	SF3B3	99	79.475	Papio_anubis
ENSCSAVG00000011454	-	100	78.325	ENSPKIG00000002712	sf3b3	99	78.325	Paramormyrops_kingsleyae
ENSCSAVG00000011454	-	100	69.816	ENSPSIG00000002232	SF3B3	99	78.952	Pelodiscus_sinensis
ENSCSAVG00000011454	-	100	69.554	ENSPMGG00000016960	sf3b3	99	75.701	Periophthalmus_magnuspinnatus
ENSCSAVG00000011454	-	100	79.392	ENSPEMG00000008603	Sf3b3	99	79.392	Peromyscus_maniculatus_bairdii
ENSCSAVG00000011454	-	100	78.407	ENSPMAG00000001793	sf3b3	99	79.181	Petromyzon_marinus
ENSCSAVG00000011454	-	100	79.310	ENSPCIG00000014927	SF3B3	99	79.310	Phascolarctos_cinereus
ENSCSAVG00000011454	-	100	78.325	ENSPFOG00000015516	sf3b3	99	78.325	Poecilia_formosa
ENSCSAVG00000011454	-	100	78.325	ENSPLAG00000014330	sf3b3	99	78.325	Poecilia_latipinna
ENSCSAVG00000011454	-	100	78.407	ENSPMEG00000019856	sf3b3	99	78.407	Poecilia_mexicana
ENSCSAVG00000011454	-	86	78.974	ENSPREG00000019669	sf3b3	98	78.974	Poecilia_reticulata
ENSCSAVG00000011454	-	95	82.090	ENSPPYG00000007539	SF3B3	99	82.090	Pongo_abelii
ENSCSAVG00000011454	-	90	83.122	ENSPCAG00000002623	SF3B3	88	83.122	Procavia_capensis
ENSCSAVG00000011454	-	84	87.850	ENSPCOG00000026582	SF3B3	99	87.850	Propithecus_coquereli
ENSCSAVG00000011454	-	100	79.310	ENSPVAG00000000684	SF3B3	99	79.310	Pteropus_vampyrus
ENSCSAVG00000011454	-	100	78.736	ENSPNYG00000003528	sf3b3	99	78.736	Pundamilia_nyererei
ENSCSAVG00000011454	-	100	78.325	ENSPNAG00000015419	sf3b3	99	78.325	Pygocentrus_nattereri
ENSCSAVG00000011454	-	100	79.392	ENSRNOG00000017724	Sf3b3	99	79.392	Rattus_norvegicus
ENSCSAVG00000011454	-	100	79.475	ENSRBIG00000021904	SF3B3	99	79.475	Rhinopithecus_bieti
ENSCSAVG00000011454	-	100	79.475	ENSRROG00000045703	SF3B3	99	79.475	Rhinopithecus_roxellana
ENSCSAVG00000011454	-	95	46.154	YML049C	-	85	46.154	Saccharomyces_cerevisiae
ENSCSAVG00000011454	-	100	79.475	ENSSBOG00000029156	SF3B3	99	79.475	Saimiri_boliviensis_boliviensis
ENSCSAVG00000011454	-	100	79.310	ENSSHAG00000000372	SF3B3	99	79.310	Sarcophilus_harrisii
ENSCSAVG00000011454	-	100	78.818	ENSSFOG00015012877	sf3b3	99	78.818	Scleropages_formosus
ENSCSAVG00000011454	-	100	78.654	ENSSMAG00000014386	sf3b3	99	78.654	Scophthalmus_maximus
ENSCSAVG00000011454	-	100	78.571	ENSSDUG00000021201	sf3b3	99	78.571	Seriola_dumerili
ENSCSAVG00000011454	-	100	78.489	ENSSLDG00000017532	sf3b3	99	78.489	Seriola_lalandi_dorsalis
ENSCSAVG00000011454	-	93	82.222	ENSSARG00000006917	SF3B3	93	82.222	Sorex_araneus
ENSCSAVG00000011454	-	100	79.228	ENSSPUG00000006253	SF3B3	99	79.228	Sphenodon_punctatus
ENSCSAVG00000011454	-	100	72.451	ENSSPAG00000003125	sf3b3	99	72.451	Stegastes_partitus
ENSCSAVG00000011454	-	100	79.392	ENSSSCG00000025323	SF3B3	99	79.392	Sus_scrofa
ENSCSAVG00000011454	-	100	79.409	ENSTGUG00000006082	SF3B3	99	79.409	Taeniopygia_guttata
ENSCSAVG00000011454	-	55	64.992	ENSTRUG00000015623	sf3b3	90	79.452	Takifugu_rubripes
ENSCSAVG00000011454	-	70	51.887	ENSTRUG00000016719	-	91	75.701	Takifugu_rubripes
ENSCSAVG00000011454	-	98	75.155	ENSTNIG00000004857	sf3b3	100	78.480	Tetraodon_nigroviridis
ENSCSAVG00000011454	-	82	85.246	ENSTBEG00000002946	SF3B3	94	82.576	Tupaia_belangeri
ENSCSAVG00000011454	-	100	78.900	ENSTTRG00000005855	SF3B3	99	78.900	Tursiops_truncatus
ENSCSAVG00000011454	-	100	79.392	ENSUAMG00000006780	SF3B3	99	79.392	Ursus_americanus
ENSCSAVG00000011454	-	100	79.392	ENSUMAG00000017757	SF3B3	99	79.392	Ursus_maritimus
ENSCSAVG00000011454	-	90	82.576	ENSVPAG00000003202	SF3B3	89	82.576	Vicugna_pacos
ENSCSAVG00000011454	-	100	79.392	ENSVVUG00000017922	SF3B3	99	79.392	Vulpes_vulpes
ENSCSAVG00000011454	-	100	78.736	ENSXETG00000032869	SF3B3	99	78.736	Xenopus_tropicalis
ENSCSAVG00000011454	-	82	79.639	ENSXCOG00000013628	sf3b3	97	79.639	Xiphophorus_couchianus
ENSCSAVG00000011454	-	100	78.489	ENSXMAG00000006334	sf3b3	99	79.513	Xiphophorus_maculatus