EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000011469 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 4164 bases
Position: chrreftig_16:4298650-4302813
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000019562	zf-CCCH	PF00642.24	5.1e-21	1	2
ENSCSAVP00000019562	zf-CCCH	PF00642.24	5.1e-21	2	2
ENSCSAVP00000019562	zf-CCHC	PF00098.23	6.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000019774	-	1321	-	ENSCSAVP00000019562	290 (aa)	-	H2ZPP6

Gene Model

Click here to download ENSCSAVG00000011469's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000011469's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000011469	-	97	53.546	ENSG00000160917	CPSF4	99	76.577	Homo_sapiens
ENSCSAVG00000011469	-	67	41.026	ENSAPOG00000004921	cpsf4	94	41.026	Acanthochromis_polyacanthus
ENSCSAVG00000011469	-	97	53.025	ENSAMEG00000006252	CPSF4	96	53.357	Ailuropoda_melanoleuca
ENSCSAVG00000011469	-	60	72.832	ENSACIG00000009248	cpsf4	96	53.737	Amphilophus_citrinellus
ENSCSAVG00000011469	-	97	54.417	ENSAOCG00000019616	cpsf4	96	54.417	Amphiprion_ocellaris
ENSCSAVG00000011469	-	97	54.417	ENSAPEG00000011679	cpsf4	96	54.417	Amphiprion_percula
ENSCSAVG00000011469	-	97	53.710	ENSATEG00000007010	cpsf4	96	53.710	Anabas_testudineus
ENSCSAVG00000011469	-	97	53.737	ENSACAG00000012941	CPSF4	86	54.417	Anolis_carolinensis
ENSCSAVG00000011469	-	97	53.546	ENSANAG00000021360	CPSF4	96	53.546	Aotus_nancymaae
ENSCSAVG00000011469	-	97	55.160	ENSACLG00000010374	cpsf4	96	62.212	Astatotilapia_calliptera
ENSCSAVG00000011469	-	97	53.710	ENSAMXG00000031647	cpsf4	97	53.137	Astyanax_mexicanus
ENSCSAVG00000011469	-	60	72.254	ENSBTAG00000002090	CPSF4	96	53.004	Bos_taurus
ENSCSAVG00000011469	-	97	53.546	ENSCJAG00000015826	CPSF4	96	53.546	Callithrix_jacchus
ENSCSAVG00000011469	-	97	53.025	ENSCAFG00000015036	CPSF4	99	67.857	Canis_familiaris
ENSCSAVG00000011469	-	97	50.178	ENSCAFG00020014462	CPSF4	96	50.530	Canis_lupus_dingo
ENSCSAVG00000011469	-	97	53.546	ENSCHIG00000014313	CPSF4	96	53.357	Capra_hircus
ENSCSAVG00000011469	-	97	42.349	ENSTSYG00000005712	-	96	52.650	Carlito_syrichta
ENSCSAVG00000011469	-	97	50.867	ENSTSYG00000014604	-	96	47.518	Carlito_syrichta
ENSCSAVG00000011469	-	50	66.667	ENSTSYG00000008195	-	94	46.947	Carlito_syrichta
ENSCSAVG00000011469	-	79	50.000	ENSCAPG00000013881	CPSF4	92	48.077	Cavia_aperea
ENSCSAVG00000011469	-	97	42.349	ENSCPOG00000001783	CPSF4	96	52.650	Cavia_porcellus
ENSCSAVG00000011469	-	97	53.546	ENSCCAG00000028291	CPSF4	96	53.546	Cebus_capucinus
ENSCSAVG00000011469	-	97	53.546	ENSCATG00000038440	CPSF4	96	53.546	Cercocebus_atys
ENSCSAVG00000011469	-	97	53.025	ENSCLAG00000007050	CPSF4	96	53.357	Chinchilla_lanigera
ENSCSAVG00000011469	-	97	53.546	ENSCSAG00000017795	CPSF4	96	53.546	Chlorocebus_sabaeus
ENSCSAVG00000011469	-	57	65.663	ENSCPBG00000010269	-	100	65.663	Chrysemys_picta_bellii
ENSCSAVG00000011469	-	78	51.101	ENSCPBG00000020869	CPSF4	95	51.965	Chrysemys_picta_bellii
ENSCSAVG00000011469	-	100	81.724	ENSCING00000021080	-	100	81.724	Ciona_intestinalis
ENSCSAVG00000011469	-	97	53.546	ENSCANG00000019384	CPSF4	96	53.546	Colobus_angolensis_palliatus
ENSCSAVG00000011469	-	97	42.349	ENSCGRG00001024184	Cpsf4	96	52.650	Cricetulus_griseus_chok1gshd
ENSCSAVG00000011469	-	97	53.025	ENSCGRG00000013892	Cpsf4	96	53.357	Cricetulus_griseus_crigri
ENSCSAVG00000011469	-	97	53.546	ENSCSEG00000019055	cpsf4	96	53.546	Cynoglossus_semilaevis
ENSCSAVG00000011469	-	97	55.160	ENSCVAG00000016528	cpsf4	96	55.160	Cyprinodon_variegatus
ENSCSAVG00000011469	-	97	52.297	ENSDARG00000020217	cpsf4	96	53.004	Danio_rerio
ENSCSAVG00000011469	-	97	53.546	ENSDNOG00000006344	CPSF4	96	53.357	Dasypus_novemcinctus
ENSCSAVG00000011469	-	78	50.220	ENSDORG00000000742	Cpsf4	94	50.655	Dipodomys_ordii
ENSCSAVG00000011469	-	97	48.136	FBgn0015621	Clp	95	47.315	Drosophila_melanogaster
ENSCSAVG00000011469	-	57	72.121	ENSETEG00000002608	CPSF4	61	72.121	Echinops_telfairi
ENSCSAVG00000011469	-	97	52.857	ENSEBUG00000012552	cpsf4	95	52.857	Eptatretus_burgeri
ENSCSAVG00000011469	-	60	72.254	ENSEASG00005002487	CPSF4	96	52.650	Equus_asinus_asinus
ENSCSAVG00000011469	-	97	53.025	ENSECAG00000007525	CPSF4	96	53.357	Equus_caballus
ENSCSAVG00000011469	-	97	52.650	ENSELUG00000011481	cpsf4	96	53.004	Esox_lucius
ENSCSAVG00000011469	-	97	53.025	ENSFCAG00000015070	CPSF4	96	53.357	Felis_catus
ENSCSAVG00000011469	-	57	50.867	ENSFALG00000012906	-	100	50.867	Ficedula_albicollis
ENSCSAVG00000011469	-	97	52.650	ENSFALG00000013799	CPSF4	96	52.650	Ficedula_albicollis
ENSCSAVG00000011469	-	88	50.588	ENSFDAG00000014092	CPSF4	96	50.973	Fukomys_damarensis
ENSCSAVG00000011469	-	97	54.577	ENSFHEG00000010880	cpsf4	96	54.577	Fundulus_heteroclitus
ENSCSAVG00000011469	-	97	50.699	ENSGMOG00000002330	cpsf4	96	50.699	Gadus_morhua
ENSCSAVG00000011469	-	97	53.004	ENSGALG00000004714	CPSF4	96	53.004	Gallus_gallus
ENSCSAVG00000011469	-	97	30.000	ENSGALG00000004441	-	95	30.000	Gallus_gallus
ENSCSAVG00000011469	-	97	54.255	ENSGAFG00000010580	cpsf4	96	54.255	Gambusia_affinis
ENSCSAVG00000011469	-	97	52.982	ENSGACG00000007792	cpsf4	96	52.982	Gasterosteus_aculeatus
ENSCSAVG00000011469	-	57	66.061	ENSGAGG00000020579	-	92	66.061	Gopherus_agassizii
ENSCSAVG00000011469	-	97	53.737	ENSGAGG00000021835	CPSF4	96	54.417	Gopherus_agassizii
ENSCSAVG00000011469	-	97	53.546	ENSGGOG00000015131	CPSF4	96	53.546	Gorilla_gorilla
ENSCSAVG00000011469	-	97	55.160	ENSHBUG00000013699	cpsf4	96	55.160	Haplochromis_burtoni
ENSCSAVG00000011469	-	97	57.803	ENSHGLG00000017150	CPSF4	96	54.225	Heterocephalus_glaber_female
ENSCSAVG00000011469	-	60	51.445	ENSHGLG00100017302	-	82	51.685	Heterocephalus_glaber_male
ENSCSAVG00000011469	-	85	52.174	ENSHGLG00100009215	-	96	50.602	Heterocephalus_glaber_male
ENSCSAVG00000011469	-	97	52.669	ENSHCOG00000004397	cpsf4	96	52.669	Hippocampus_comes
ENSCSAVG00000011469	-	97	54.255	ENSIPUG00000017147	cpsf4	96	54.448	Ictalurus_punctatus
ENSCSAVG00000011469	-	97	53.025	ENSSTOG00000001688	CPSF4	96	53.357	Ictidomys_tridecemlineatus
ENSCSAVG00000011469	-	97	53.025	ENSJJAG00000019426	Cpsf4	96	53.357	Jaculus_jaculus
ENSCSAVG00000011469	-	97	53.901	ENSKMAG00000015642	cpsf4	96	53.901	Kryptolebias_marmoratus
ENSCSAVG00000011469	-	97	53.333	ENSLACG00000010938	CPSF4	96	53.333	Latimeria_chalumnae
ENSCSAVG00000011469	-	97	49.822	ENSLACG00000018470	-	96	49.822	Latimeria_chalumnae
ENSCSAVG00000011469	-	97	53.381	ENSLOCG00000004814	cpsf4	96	53.025	Lepisosteus_oculatus
ENSCSAVG00000011469	-	97	53.025	ENSLAFG00000000159	CPSF4	96	53.357	Loxodonta_africana
ENSCSAVG00000011469	-	97	53.546	ENSMFAG00000001462	CPSF4	96	53.546	Macaca_fascicularis
ENSCSAVG00000011469	-	97	53.546	ENSMMUG00000019191	CPSF4	96	53.546	Macaca_mulatta
ENSCSAVG00000011469	-	97	53.546	ENSMNEG00000032306	CPSF4	96	53.546	Macaca_nemestrina
ENSCSAVG00000011469	-	97	53.546	ENSMLEG00000034721	CPSF4	96	53.546	Mandrillus_leucophaeus
ENSCSAVG00000011469	-	97	53.737	ENSMAMG00000006244	cpsf4	96	53.737	Mastacembelus_armatus
ENSCSAVG00000011469	-	97	55.160	ENSMZEG00005007515	cpsf4	96	55.160	Maylandia_zebra
ENSCSAVG00000011469	-	85	49.799	ENSMGAG00000004235	CPSF4	95	49.799	Meleagris_gallopavo
ENSCSAVG00000011469	-	97	53.025	ENSMAUG00000021253	Cpsf4	96	53.357	Mesocricetus_auratus
ENSCSAVG00000011469	-	97	53.381	ENSMICG00000017429	CPSF4	96	54.417	Microcebus_murinus
ENSCSAVG00000011469	-	97	53.025	ENSMOCG00000014901	Cpsf4	96	53.357	Microtus_ochrogaster
ENSCSAVG00000011469	-	97	54.064	ENSMMOG00000001813	cpsf4	95	67.879	Mola_mola
ENSCSAVG00000011469	-	97	53.737	ENSMODG00000001367	CPSF4	96	54.417	Monodelphis_domestica
ENSCSAVG00000011469	-	97	54.417	ENSMALG00000012611	cpsf4	96	54.417	Monopterus_albus
ENSCSAVG00000011469	-	97	53.025	MGP_CAROLIEiJ_G0028012	Cpsf4	96	53.357	Mus_caroli
ENSCSAVG00000011469	-	97	53.025	ENSMUSG00000029625	Cpsf4	96	53.357	Mus_musculus
ENSCSAVG00000011469	-	97	53.025	MGP_PahariEiJ_G0024581	Cpsf4	96	53.357	Mus_pahari
ENSCSAVG00000011469	-	97	53.025	MGP_SPRETEiJ_G0029013	Cpsf4	96	54.064	Mus_spretus
ENSCSAVG00000011469	-	97	53.025	ENSMPUG00000016508	CPSF4	96	53.357	Mustela_putorius_furo
ENSCSAVG00000011469	-	85	48.583	ENSMLUG00000010980	CPSF4	95	49.402	Myotis_lucifugus
ENSCSAVG00000011469	-	97	53.381	ENSNGAG00000001567	Cpsf4	96	53.710	Nannospalax_galili
ENSCSAVG00000011469	-	89	53.307	ENSNBRG00000003943	cpsf4	94	53.307	Neolamprologus_brichardi
ENSCSAVG00000011469	-	97	53.737	ENSNLEG00000011074	CPSF4	96	54.417	Nomascus_leucogenys
ENSCSAVG00000011469	-	97	53.737	ENSMEUG00000006955	CPSF4	96	54.417	Notamacropus_eugenii
ENSCSAVG00000011469	-	97	52.669	ENSOPRG00000013663	CPSF4	96	53.004	Ochotona_princeps
ENSCSAVG00000011469	-	97	41.463	ENSODEG00000009779	-	96	41.463	Octodon_degus
ENSCSAVG00000011469	-	97	53.025	ENSODEG00000011181	-	96	53.357	Octodon_degus
ENSCSAVG00000011469	-	97	45.196	ENSODEG00000018283	-	88	45.936	Octodon_degus
ENSCSAVG00000011469	-	97	55.160	ENSONIG00000008495	cpsf4	96	55.160	Oreochromis_niloticus
ENSCSAVG00000011469	-	98	44.828	ENSOANG00000009568	-	97	44.828	Ornithorhynchus_anatinus
ENSCSAVG00000011469	-	85	50.607	ENSOANG00000007729	CPSF4	96	50.607	Ornithorhynchus_anatinus
ENSCSAVG00000011469	-	97	53.546	ENSOCUG00000002437	CPSF4	67	53.546	Oryctolagus_cuniculus
ENSCSAVG00000011469	-	97	54.417	ENSORLG00000022798	cpsf4	96	54.417	Oryzias_latipes
ENSCSAVG00000011469	-	97	54.417	ENSORLG00020008548	cpsf4	96	54.417	Oryzias_latipes_hni
ENSCSAVG00000011469	-	97	54.417	ENSORLG00015019575	cpsf4	96	54.417	Oryzias_latipes_hsok
ENSCSAVG00000011469	-	97	53.710	ENSOMEG00000005176	cpsf4	96	53.710	Oryzias_melastigma
ENSCSAVG00000011469	-	97	53.025	ENSOGAG00000010884	CPSF4	96	54.064	Otolemur_garnettii
ENSCSAVG00000011469	-	97	48.936	ENSOARG00000018668	CPSF4	96	48.936	Ovis_aries
ENSCSAVG00000011469	-	97	53.546	ENSPPAG00000043355	CPSF4	96	53.546	Pan_paniscus
ENSCSAVG00000011469	-	97	53.025	ENSPPRG00000003134	CPSF4	96	53.357	Panthera_pardus
ENSCSAVG00000011469	-	88	51.181	ENSPTIG00000005604	CPSF4	86	51.562	Panthera_tigris_altaica
ENSCSAVG00000011469	-	97	53.546	ENSPTRG00000019453	CPSF4	96	53.546	Pan_troglodytes
ENSCSAVG00000011469	-	97	53.546	ENSPANG00000023123	CPSF4	96	53.546	Papio_anubis
ENSCSAVG00000011469	-	97	52.650	ENSPKIG00000014278	cpsf4	96	52.650	Paramormyrops_kingsleyae
ENSCSAVG00000011469	-	79	46.288	ENSPSIG00000018198	-	94	46.288	Pelodiscus_sinensis
ENSCSAVG00000011469	-	78	51.101	ENSPSIG00000011229	CPSF4	95	51.965	Pelodiscus_sinensis
ENSCSAVG00000011469	-	97	49.822	ENSPMGG00000017735	cpsf4	96	49.822	Periophthalmus_magnuspinnatus
ENSCSAVG00000011469	-	97	53.025	ENSPEMG00000004508	Cpsf4	96	53.357	Peromyscus_maniculatus_bairdii
ENSCSAVG00000011469	-	97	53.737	ENSPCIG00000024776	CPSF4	96	54.417	Phascolarctos_cinereus
ENSCSAVG00000011469	-	97	54.255	ENSPFOG00000014912	cpsf4	96	54.255	Poecilia_formosa
ENSCSAVG00000011469	-	97	52.482	ENSPLAG00000009599	cpsf4	96	52.482	Poecilia_latipinna
ENSCSAVG00000011469	-	97	54.255	ENSPMEG00000009790	cpsf4	96	54.255	Poecilia_mexicana
ENSCSAVG00000011469	-	97	54.610	ENSPREG00000018166	cpsf4	96	54.610	Poecilia_reticulata
ENSCSAVG00000011469	-	85	50.202	ENSPPYG00000017378	CPSF4	96	50.806	Pongo_abelii
ENSCSAVG00000011469	-	97	53.025	ENSPCAG00000001892	CPSF4	96	53.357	Procavia_capensis
ENSCSAVG00000011469	-	97	53.381	ENSPCOG00000012771	CPSF4	96	53.710	Propithecus_coquereli
ENSCSAVG00000011469	-	97	49.466	ENSPVAG00000007531	CPSF4	96	49.823	Pteropus_vampyrus
ENSCSAVG00000011469	-	97	55.160	ENSPNYG00000018559	cpsf4	96	55.160	Pundamilia_nyererei
ENSCSAVG00000011469	-	97	53.357	ENSPNAG00000003736	cpsf4	96	54.035	Pygocentrus_nattereri
ENSCSAVG00000011469	-	97	51.246	ENSRNOG00000000985	Cpsf4	96	52.632	Rattus_norvegicus
ENSCSAVG00000011469	-	85	50.607	ENSRBIG00000033886	CPSF4	96	51.210	Rhinopithecus_bieti
ENSCSAVG00000011469	-	97	50.890	ENSRROG00000040431	CPSF4	96	53.025	Rhinopithecus_roxellana
ENSCSAVG00000011469	-	97	53.546	ENSSBOG00000020493	CPSF4	96	53.546	Saimiri_boliviensis_boliviensis
ENSCSAVG00000011469	-	97	53.737	ENSSHAG00000011533	CPSF4	96	54.417	Sarcophilus_harrisii
ENSCSAVG00000011469	-	97	54.064	ENSSFOG00015007883	cpsf4	96	53.004	Scleropages_formosus
ENSCSAVG00000011469	-	97	53.004	ENSSMAG00000006374	cpsf4	96	53.004	Scophthalmus_maximus
ENSCSAVG00000011469	-	97	52.313	ENSSDUG00000018887	cpsf4	96	52.313	Seriola_dumerili
ENSCSAVG00000011469	-	97	52.313	ENSSLDG00000019078	cpsf4	96	52.313	Seriola_lalandi_dorsalis
ENSCSAVG00000011469	-	85	50.000	ENSSARG00000012416	CPSF4	96	51.210	Sorex_araneus
ENSCSAVG00000011469	-	68	57.727	ENSSPUG00000014803	-	98	57.727	Sphenodon_punctatus
ENSCSAVG00000011469	-	97	53.381	ENSSPUG00000003549	CPSF4	96	53.381	Sphenodon_punctatus
ENSCSAVG00000011469	-	97	51.957	ENSSPAG00000006174	cpsf4	96	51.957	Stegastes_partitus
ENSCSAVG00000011469	-	97	50.890	ENSSSCG00000026896	CPSF4	96	52.669	Sus_scrofa
ENSCSAVG00000011469	-	97	52.281	ENSTGUG00000007552	CPSF4	96	52.281	Taeniopygia_guttata
ENSCSAVG00000011469	-	97	54.804	ENSTRUG00000024220	cpsf4	96	54.804	Takifugu_rubripes
ENSCSAVG00000011469	-	97	52.669	ENSTNIG00000006265	cpsf4	96	54.064	Tetraodon_nigroviridis
ENSCSAVG00000011469	-	85	46.341	ENSTBEG00000011406	CPSF4	96	46.748	Tupaia_belangeri
ENSCSAVG00000011469	-	60	72.254	ENSTTRG00000003007	CPSF4	66	71.910	Tursiops_truncatus
ENSCSAVG00000011469	-	60	72.254	ENSUAMG00000008051	CPSF4	69	71.910	Ursus_americanus
ENSCSAVG00000011469	-	97	51.246	ENSUMAG00000009474	CPSF4	96	52.632	Ursus_maritimus
ENSCSAVG00000011469	-	97	51.957	ENSVVUG00000008824	CPSF4	96	53.004	Vulpes_vulpes
ENSCSAVG00000011469	-	97	49.650	ENSXETG00000004641	cpsf4l	96	49.650	Xenopus_tropicalis
ENSCSAVG00000011469	-	97	51.890	ENSXETG00000009892	cpsf4	96	53.242	Xenopus_tropicalis
ENSCSAVG00000011469	-	97	54.255	ENSXCOG00000016040	cpsf4	96	54.255	Xiphophorus_couchianus
ENSCSAVG00000011469	-	97	54.255	ENSXMAG00000024670	cpsf4	96	54.255	Xiphophorus_maculatus